genome.fa.s14.2.7.7.80.10.50.1000.205.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  205  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60464019--60464076	22	2.6	22	81	7	64	41	17	5	36	1.72
60464055--60464167	19	5.9	19	89	0	181	38	13	8	39	1.76
60464048--60464176	57	2.3	56	86	5	181	37	13	9	39	1.76
60464491--60465385	132	6.8	132	92	0	1434	29	23	18	29	1.97
60466698--60466732	18	2.0	17	94	5	61	0	14	0	85	0.59
60470132--60470211	40	2.0	40	95	0	142	20	37	22	20	1.94
60474431--60474560	19	6.8	19	86	0	188	37	13	8	40	1.74
60474431--60474560	38	3.4	38	95	0	233	37	13	8	40	1.74
60475587--60475623	19	1.9	19	94	0	65	43	21	0	35	1.53
60475833--60475898	33	2.0	33	96	0	123	40	18	3	37	1.66
60477721--60477824	49	2.1	49	90	0	163	31	6	8	52	1.58
60479165--60479194	15	1.9	16	93	6	53	43	0	6	50	1.28
60479135--60479325	61	3.2	61	72	11	221	42	1	4	51	1.29
60479186--60479220	18	2.0	17	94	5	61	42	0	0	57	0.99
60479191--60479239	18	2.9	18	82	14	52	46	0	0	53	1.00
60479098--60479360	120	2.2	120	98	0	508	42	0	4	52	1.26
60479285--60479314	15	1.9	16	93	6	53	43	0	6	50	1.28
60479687--60479726	20	2.0	20	95	0	71	47	5	20	27	1.70
60479720--60479760	20	2.0	20	85	0	55	58	9	7	24	1.55
60479872--60479925	26	2.1	26	82	6	65	38	3	22	35	1.72
60480117--60480189	30	2.6	28	80	6	85	32	2	5	58	1.35
60480124--60480186	18	3.3	19	80	12	67	30	3	4	61	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60483919--60483969	22	2.3	23	80	12	63	25	5	1	66	1.24
60488434--60488472	20	2.0	20	84	0	51	51	30	0	17	1.46
60488730--60488803	29	2.5	29	86	4	94	21	13	16	48	1.80
60488755--60488828	29	2.5	29	84	4	94	27	14	12	45	1.80
60489385--60489454	29	2.3	29	83	9	79	48	14	12	24	1.78
60491177--60491231	3	18.3	3	96	0	101	34	1	0	63	1.05
60491249--60491284	18	2.0	18	88	0	54	33	2	19	44	1.65
60502794--60502850	29	1.9	30	89	3	89	45	8	5	40	1.58
60512757--60512796	17	2.3	18	86	4	55	65	0	0	35	0.93
60514108--60514221	51	2.3	51	80	4	117	53	8	4	33	1.52
60514653--60514694	17	2.5	17	100	0	84	61	11	4	21	1.48
60517273--60517383	51	2.2	51	95	0	195	53	2	1	42	1.25
60517409--60517441	16	2.1	16	88	5	50	51	9	3	36	1.49
60535246--60535279	16	2.1	16	88	0	50	64	0	0	35	0.94
60538808--60538850	22	1.9	23	90	4	70	51	18	16	13	1.77
60549549--60549693	57	2.5	57	84	1	191	22	19	17	40	1.91
60557036--60557071	17	2.1	18	89	5	56	50	5	0	44	1.25
60557041--60557081	18	2.2	19	83	12	50	43	4	2	48	1.37
60560778--60560827	3	17.3	3	79	8	59	30	0	4	66	1.10
60560781--60560822	18	2.4	18	92	4	68	28	0	4	66	1.12
60563569--60563683	25	4.6	25	84	1	133	20	23	19	36	1.95
60566491--60566558	3	22.7	3	100	0	136	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60570184--60570223	13	2.9	14	88	7	55	70	0	15	15	1.18
60570185--60570232	7	6.7	7	79	11	53	68	0	16	14	1.21
60570185--60570232	15	3.3	15	80	11	55	68	0	16	14	1.21
60570314--60570394	42	1.9	42	89	0	126	33	16	24	25	1.96
60571484--60571658	88	2.0	88	85	2	235	26	20	26	25	1.99
60571858--60572120	101	2.6	100	85	4	350	30	20	23	25	1.98
60571858--60572156	100	3.0	100	80	10	349	30	20	23	25	1.99
60572182--60572363	44	4.2	41	72	13	127	31	18	22	27	1.97
60573312--60573365	3	17.0	3	77	11	54	29	1	7	61	1.34
60573498--60573531	18	1.9	18	88	5	52	29	8	5	55	1.54
60576139--60576170	13	2.5	13	94	0	55	46	0	0	53	1.00
60578258--60578314	24	2.4	24	88	5	80	45	14	7	33	1.71
60578270--60578321	24	2.2	24	92	0	86	48	9	5	36	1.60
60579732--60579815	42	2.0	42	92	0	141	39	20	23	16	1.92
60582549--60582600	24	2.2	24	89	0	77	50	9	3	36	1.54
60585626--60585792	85	2.0	85	87	0	244	26	23	20	28	1.99
60588612--60588645	16	2.1	16	88	0	50	50	14	17	17	1.79
60589329--60589369	21	2.0	21	95	0	73	19	26	21	31	1.97
60591910--60591943	16	2.1	16	88	0	50	50	14	17	17	1.79
60592602--60592647	19	2.5	17	80	19	56	26	2	4	67	1.21
60597590--60597630	21	2.0	21	85	0	55	31	4	7	56	1.48
60603913--60603984	36	2.0	36	88	0	108	25	0	43	31	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60608675--60608708	15	2.3	15	84	0	50	8	20	50	20	1.75
60610435--60610465	16	1.9	16	93	0	53	16	6	3	74	1.16
60611216--60611246	2	15.5	2	93	0	53	45	0	3	51	1.17
60614012--60614051	15	2.7	15	88	3	55	35	0	0	65	0.93
60615433--60615477	21	2.1	21	95	0	81	40	31	8	20	1.83
60616314--60616378	32	2.1	32	97	2	123	47	12	9	30	1.72
60621730--60621768	12	3.3	12	89	7	62	2	15	12	69	1.30
60621729--60621768	11	3.5	11	90	6	62	2	17	12	67	1.33
60621764--60621797	14	2.4	14	90	0	50	0	14	2	82	0.79
60622350--60622414	32	2.1	32	94	2	114	46	12	10	30	1.76
60630745--60630777	13	2.4	14	85	5	50	30	30	15	24	1.95
60630856--60630909	15	3.7	15	75	5	56	16	1	40	40	1.59
60630862--60630930	29	2.4	29	80	4	86	18	5	40	34	1.75
60635613--60635641	14	2.1	14	100	0	58	62	0	13	24	1.32
60635980--60636522	271	2.0	271	94	1	946	33	16	14	34	1.90
60650496--60650530	16	2.3	15	90	5	52	22	14	8	54	1.67
60650968--60651030	23	2.7	24	78	9	67	41	1	0	57	1.08
60650986--60651018	15	2.1	16	88	5	50	48	3	0	48	1.17
60656171--60656214	19	2.2	20	84	4	54	43	4	4	47	1.44
60656674--60656702	5	5.8	5	100	0	58	41	0	17	41	1.49
60657083--60657122	19	2.1	19	85	0	53	47	0	2	50	1.14
60663455--60663532	39	2.0	39	97	0	147	28	10	34	26	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60666174--60666239	32	2.1	32	97	0	123	46	24	7	21	1.76
60668312--60668481	85	1.9	88	85	7	238	32	20	8	38	1.83
60668309--60668515	85	2.3	88	78	9	222	36	20	7	35	1.81
60668580--60668661	26	3.1	25	74	11	74	69	0	1	29	0.96
60668589--60668684	9	11.0	9	77	18	64	71	0	3	25	1.00
60668589--60668684	17	5.5	18	71	22	64	71	0	3	25	1.00
60668595--60668681	36	2.5	35	80	14	99	71	0	3	25	1.02
60668592--60668684	8	10.8	8	75	18	64	72	0	3	24	1.00
60668534--60668684	72	2.1	71	79	10	157	67	1	3	27	1.14
60668945--60669007	19	3.3	19	84	2	72	33	3	0	63	1.10
60669010--60669188	87	2.1	88	87	8	260	34	5	20	40	1.76
60677211--60677358	77	1.9	76	81	6	174	28	12	16	42	1.84
60680586--60680620	18	1.9	18	88	0	52	40	17	20	22	1.92
60681889--60681931	3	14.3	3	90	9	70	2	0	65	32	1.06
60700672--60700709	17	2.2	19	86	13	55	21	0	0	78	0.74
60704759--60704809	27	2.0	24	85	11	66	47	7	1	43	1.43
60709017--60709085	30	2.3	30	92	0	111	34	27	1	36	1.66
60710841--60710882	18	2.3	18	87	0	57	23	26	7	42	1.80
60714219--60714738	126	4.1	126	89	3	787	29	17	17	35	1.93
60714219--60714738	251	2.1	252	90	2	805	29	17	17	35	1.93
60714800--60714911	34	3.4	33	80	6	127	45	14	0	39	1.51
60715017--60715055	15	2.6	15	87	0	51	56	33	0	10	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60719504--60719549	2	23.5	2	95	4	85	50	0	0	50	1.00
60719989--60720037	21	2.3	21	85	0	71	36	6	0	57	1.24
60721931--60721969	20	1.9	21	84	5	53	53	7	2	35	1.43
60727459--60727522	31	2.1	29	88	5	92	29	3	9	57	1.45
60727460--60727530	30	2.4	30	81	11	85	30	2	8	57	1.43
60738021--60738063	16	2.8	16	92	3	70	41	0	16	41	1.48
60738062--60738096	18	2.0	17	88	5	52	45	0	0	54	0.99
60738182--60738216	18	2.0	17	88	5	52	45	0	0	54	0.99
60738172--60738444	147	1.8	149	95	1	496	46	2	3	46	1.33
60738329--60738363	18	2.0	17	88	5	52	45	0	0	54	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211