genome.fa.s14.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  17  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4638262--4638299	3	12.7	3	100	0	76	31	34	0	34	1.58
4640232--4640274	22	2.0	22	95	0	77	9	20	27	41	1.83
4640370--4640575	85	2.4	86	81	2	209	23	26	26	23	2.00
4640367--4640765	43	9.3	43	75	7	215	27	29	21	21	1.98
4641118--4641209	21	4.4	21	88	0	121	4	44	18	32	1.69
4646666--4648024	27	49.3	25	77	13	135	36	1	13	49	1.50
4646723--4646985	9	29.7	9	70	17	133	39	1	14	44	1.55
4646652--4646771	16	7.9	16	66	19	69	35	3	16	44	1.65
4646825--4646857	16	2.1	16	100	0	66	30	0	24	45	1.53
4646841--4647944	27	38.7	31	80	14	851	36	0	12	50	1.47
4646972--4647029	22	2.6	23	83	5	75	36	1	10	51	1.46
4647025--4647075	22	2.4	22	83	3	68	45	0	7	47	1.32
4646843--4647620	171	4.6	171	90	5	1097	37	1	11	49	1.48
4646907--4648024	9	121.3	9	73	15	501	36	0	12	50	1.47
4646756--4647976	171	7.3	172	84	9	949	36	1	12	49	1.48
4647533--4648021	27	18.5	27	90	4	737	33	0	14	52	1.43
4650289--4650367	40	2.0	40	84	0	104	34	18	16	30	1.94
4650225--4650540	114	2.8	114	92	1	544	37	18	15	27	1.91
4650405--4650482	40	2.0	39	82	7	95	34	19	16	29	1.94
4650444--4650615	75	2.3	74	95	2	308	39	18	13	27	1.89
4650329--4650707	189	2.0	189	90	1	589	39	19	14	26	1.90
4650704--4650988	114	2.5	115	81	2	315	31	22	17	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4651566--4651616	21	2.4	21	86	0	75	37	43	5	13	1.69
4652070--4652207	73	1.9	72	88	4	206	30	20	21	27	1.98
4652107--4652433	113	2.9	114	84	2	408	30	23	21	25	1.99
4652443--4652539	40	2.4	41	81	3	108	20	15	22	41	1.90
4652401--4652553	39	3.8	40	80	3	141	22	19	20	37	1.95
4652819--4652857	19	2.1	19	100	0	78	28	15	10	46	1.78
4659557--4659589	13	2.4	14	90	5	50	33	0	3	63	1.10
4668720--4668746	3	9.0	3	100	0	54	0	33	0	66	0.92
4670426--4670928	253	2.0	254	88	0	756	28	16	16	37	1.91
4670988--4671039	26	1.9	27	92	7	88	65	11	1	21	1.34
4675059--4675144	44	2.0	44	83	0	109	38	2	4	54	1.34
4681931--4682392	231	2.0	231	96	0	863	24	15	22	37	1.93
4703249--4703314	30	2.2	31	83	2	80	39	1	7	51	1.40
4703742--4703798	30	1.9	30	88	0	87	29	19	5	45	1.72
4709328--4709388	32	1.9	32	86	6	88	31	19	13	36	1.90
4710628--4710661	17	2.0	17	94	0	59	44	50	0	5	1.26
4715267--4715300	17	2.0	17	94	0	59	44	50	0	5	1.26
4715640--4715666	10	2.7	10	100	0	54	44	40	7	7	1.60
4718709--4718801	18	5.2	18	89	0	123	34	16	21	27	1.95
4718709--4718801	36	2.6	36	91	0	141	34	16	21	27	1.95
4722356--4722420	12	5.9	10	73	23	51	64	3	3	29	1.23
4722370--4722404	3	11.7	3	93	0	61	65	0	2	31	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4723184--4723257	33	2.2	33	92	0	121	29	13	17	39	1.88
4724027--4724448	44	9.6	44	70	10	220	28	22	19	29	1.98
4724066--4724461	88	4.5	87	70	11	306	27	22	19	29	1.98
4723976--4724461	175	2.8	175	93	0	846	28	22	18	30	1.98
4737139--4737200	12	5.9	10	74	22	56	64	3	3	29	1.25
4737153--4737184	3	10.7	3	93	0	55	65	0	3	31	1.08
4740583--4740623	21	1.9	21	90	5	64	46	0	2	51	1.14
4752763--4753348	46	13.7	44	72	13	256	29	21	23	26	1.99
4752766--4753353	80	6.9	85	74	12	365	29	21	23	26	1.99
4755096--4755135	21	1.9	21	94	0	71	47	0	2	50	1.14
4762056--4762096	21	2.0	21	90	0	64	29	21	29	19	1.98
4763624--4763664	20	2.0	20	100	0	82	29	9	17	43	1.80
4766419--4766461	11	4.0	11	84	3	61	30	2	46	20	1.63
4766419--4766461	21	2.0	21	90	4	68	30	2	46	20	1.63
4770502--4770590	18	4.9	18	83	0	115	34	12	22	30	1.91
4770501--4770590	36	2.5	36	90	0	144	34	12	22	31	1.91
4771066--4771108	11	4.0	11	78	3	52	30	2	44	23	1.66
4791554--4791600	21	2.2	22	92	3	78	21	19	38	21	1.94
4802831--4802897	35	1.9	35	87	3	100	32	10	13	43	1.78
4807803--4808072	134	2.0	133	98	0	522	39	7	2	50	1.47
4807812--4808115	134	2.3	132	89	4	409	38	8	3	49	1.50
4808169--4808228	22	2.7	23	75	14	63	35	11	0	53	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4808169--4808235	23	3.0	23	72	14	59	37	11	0	50	1.39
4808260--4808304	24	2.0	22	82	8	54	33	8	4	53	1.52
4808292--4808350	26	2.2	26	82	8	66	32	8	1	57	1.39
4808637--4808955	108	3.0	106	86	6	446	31	19	17	31	1.95
4817736--4817802	26	2.5	26	86	9	91	40	4	1	53	1.30
4817879--4817931	27	2.0	27	92	7	90	26	30	26	16	1.97
4817971--4818089	4	29.0	4	74	18	86	68	0	30	0	0.95
4817970--4818089	22	5.6	21	73	17	95	68	0	30	0	0.96
4817976--4818095	21	6.1	19	71	17	75	69	0	30	0	0.95
4817974--4818111	63	2.2	62	89	5	208	68	0	30	0	0.94
4817975--4818096	18	6.3	18	70	25	72	68	0	31	0	0.96
4818046--4818120	39	2.0	37	87	10	107	70	0	29	0	0.87
4818050--4818122	18	3.9	18	75	15	67	69	0	30	0	0.88
4823614--4823658	18	2.5	18	81	0	54	20	44	6	28	1.76
4824216--4824252	12	3.1	12	92	0	56	62	16	0	21	1.33
4824438--4824469	3	10.7	3	100	0	64	68	31	0	0	0.90
4824533--4824571	20	2.0	21	85	10	55	66	10	0	23	1.22
4824595--4824623	10	2.7	11	89	10	51	0	27	0	72	0.85
4824706--4824806	27	3.7	27	82	5	116	17	29	26	25	1.98
4824871--4824939	26	2.6	27	84	9	88	46	1	10	42	1.46
4825351--4825425	27	2.8	27	81	0	87	26	21	28	24	1.99
4826212--4826276	27	2.4	27	92	0	103	18	30	21	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4830741--4830780	9	4.4	9	93	6	64	90	0	10	0	0.47
4832017--4832089	38	1.9	38	94	0	128	42	8	21	27	1.81
4832485--4832516	16	1.9	17	93	6	57	56	0	0	43	0.99
4839935--4839993	30	2.0	30	83	6	75	49	0	0	50	1.00
4840369--4840405	9	4.1	9	89	0	56	45	10	10	32	1.74
4840900--4840980	17	4.6	17	72	20	69	38	3	2	55	1.31
4842416--4842449	15	2.3	15	89	0	50	67	0	0	32	0.91
4845256--4845296	19	2.0	21	86	9	59	63	19	4	12	1.46
4851683--4851733	23	2.2	23	96	0	93	45	7	7	39	1.62
4851738--4851774	18	2.0	19	85	15	51	59	10	0	29	1.31
4853405--4853431	5	5.4	5	100	0	54	59	0	0	40	0.98
4853410--4853455	22	2.2	20	84	7	56	56	0	0	43	0.99
4853405--4853439	15	2.2	17	90	10	56	57	0	0	42	0.99
4853404--4853455	27	1.9	27	84	7	70	55	0	0	44	0.99
4861893--4861933	21	2.0	21	90	0	64	29	21	29	19	1.98
4870970--4871035	29	2.2	29	83	5	78	50	10	15	24	1.75
4874586--4874625	20	2.0	20	90	0	62	47	2	0	50	1.14
4877453--4877482	15	2.0	15	93	0	51	40	20	16	23	1.91
4877687--4877728	21	2.0	21	95	0	75	45	4	30	19	1.71
4885174--4885252	39	2.0	39	100	0	158	43	15	27	13	1.85
4897431--4897478	16	2.9	17	75	12	55	64	4	0	31	1.12
4897621--4897676	29	1.9	29	82	7	69	62	5	1	30	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4897846--4897884	21	2.0	20	85	10	53	28	2	0	69	1.02
4897845--4897915	28	2.4	30	81	15	85	28	2	0	69	1.03
4897863--4897917	26	2.0	28	86	10	78	30	1	0	67	1.01
4898071--4898169	49	2.0	49	100	0	198	28	12	22	37	1.90
4901515--4901562	23	2.1	23	92	0	78	14	2	6	77	1.06
4908402--4908471	34	2.1	34	100	0	140	45	8	20	25	1.79
4910619--4910668	17	2.7	20	78	18	70	10	0	44	46	1.37
4915247--4915296	17	2.7	20	78	18	70	10	0	44	46	1.37
4916672--4916805	71	1.9	71	100	0	268	45	11	17	24	1.83
4937457--4937495	18	2.1	19	85	4	53	56	2	0	41	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211