genome.fa.s14.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  129  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37705972--37706044	6	11.8	6	75	16	69	47	15	19	17	1.82
37705972--37706044	31	2.4	31	92	0	119	47	15	19	17	1.82
37706183--37706240	27	2.1	28	84	9	75	36	24	20	18	1.95
37706832--37707160	27	12.2	26	86	5	381	25	17	18	38	1.93
37706832--37707153	81	4.0	81	87	0	448	25	18	18	37	1.93
37707210--37707512	27	11.2	27	84	4	290	31	8	20	39	1.82
37707199--37707512	81	3.9	81	84	5	382	30	8	21	39	1.82
37707199--37707504	54	5.7	54	85	2	382	30	8	21	39	1.83
37709947--37710496	47	11.6	47	92	2	895	29	29	8	33	1.86
37709947--37710496	190	2.9	190	93	1	933	29	29	8	33	1.86
37710187--37710265	25	3.3	25	66	16	76	31	29	5	34	1.79
37724599--37724640	20	2.3	19	84	15	54	38	7	26	28	1.82
37732236--37732297	30	2.1	30	96	0	115	20	17	29	32	1.96
37735313--37735352	20	2.0	20	100	0	80	40	10	10	40	1.72
37741522--37741578	30	1.9	30	85	7	80	21	29	35	14	1.92
37741706--37741830	15	8.3	15	67	14	51	28	2	0	68	1.07
37741706--37741757	22	2.5	20	85	11	77	23	0	1	75	0.91
37741735--37741800	27	2.4	27	79	18	75	30	4	0	65	1.13
37748117--37748234	59	2.0	58	93	1	200	32	15	19	33	1.93
37749627--37749745	42	2.8	42	80	0	139	29	16	26	26	1.97
37751054--37751105	27	2.0	26	84	3	68	38	21	23	17	1.93
37751268--37751309	19	2.2	20	82	4	50	23	19	14	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37751727--37751880	27	5.7	28	81	9	90	25	22	18	33	1.96
37751748--37751895	27	5.5	27	86	3	199	25	21	17	35	1.95
37755276--37755460	79	2.3	81	83	7	227	24	22	27	24	2.00
37755277--37755460	40	4.6	40	82	9	207	25	22	27	24	2.00
37755329--37755493	79	2.1	79	83	6	201	26	21	27	24	1.99
37760170--37760198	13	2.2	13	100	0	58	48	6	10	34	1.64
37762824--37762894	28	2.5	29	82	11	94	59	0	4	36	1.17
37762860--37762908	17	2.8	17	84	12	64	65	0	4	30	1.11
37762838--37762911	18	4.2	18	75	14	73	60	0	4	35	1.15
37763351--37763418	34	2.0	34	85	5	93	29	5	2	61	1.34
37763348--37763418	35	2.0	35	86	8	99	29	5	2	61	1.33
37765150--37765200	22	2.4	22	83	9	61	47	13	15	23	1.82
37767382--37767438	23	2.5	23	75	13	55	42	8	17	31	1.80
37778087--37778112	10	2.6	10	100	0	52	7	0	7	84	0.77
37780063--37780113	24	2.1	24	92	0	84	33	1	43	21	1.64
37784011--37784049	19	2.1	19	95	0	69	41	15	12	30	1.85
37797077--37797113	18	2.1	18	100	0	74	37	40	0	21	1.54
37798148--37798187	22	1.9	21	85	10	55	45	2	2	50	1.28
37798292--37798325	13	2.6	13	95	0	59	82	0	17	0	0.67
37798293--37798325	9	3.8	9	84	8	50	81	0	18	0	0.68
37799425--37799512	42	2.0	44	82	4	108	45	4	21	28	1.71
37804174--37804222	24	2.2	23	85	10	66	61	0	2	36	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37809033--37809064	12	2.7	12	95	0	55	25	3	25	46	1.67
37813162--37813220	30	2.0	30	86	0	82	38	5	23	32	1.77
37813943--37813992	12	4.2	12	79	2	57	50	6	26	18	1.69
37820550--37820657	50	2.2	51	81	6	123	32	25	13	27	1.94
37824008--37824042	13	2.8	12	83	8	52	31	11	0	57	1.34
37824140--37824187	23	2.2	23	85	7	64	33	2	2	62	1.18
37824139--37824247	21	5.2	21	69	16	66	37	0	3	57	1.22
37824160--37824318	61	2.6	60	84	8	191	42	0	3	53	1.21
37824489--37824526	16	2.4	16	90	0	58	26	18	5	50	1.68
37841133--37841189	30	1.9	29	85	3	78	47	5	19	28	1.71
37841537--37841715	50	3.6	49	78	3	164	25	22	27	23	2.00
37841925--37841963	20	2.0	20	90	10	62	56	5	23	15	1.59
37846347--37846423	40	1.9	40	100	0	154	42	10	9	37	1.71
37846481--37846572	35	2.7	31	77	19	96	45	11	3	39	1.57
37849645--37849684	14	2.9	14	84	0	53	42	17	7	32	1.77
37849610--37849676	34	1.9	35	84	3	91	43	13	10	32	1.78
37857280--37857423	50	2.7	52	82	8	166	26	22	28	22	1.99
37857328--37857459	50	2.6	50	86	0	174	28	23	28	19	1.98
37857724--37857773	20	2.5	20	81	12	66	58	6	24	12	1.56
37867073--37867112	13	3.1	13	100	0	80	0	22	45	32	1.53
37869844--37869876	17	1.9	17	100	0	66	48	12	18	21	1.80
37887218--37887298	26	3.1	26	79	8	85	44	0	2	53	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37887211--37887362	27	5.8	26	71	16	100	42	1	2	53	1.23
37888726--37888768	20	2.2	20	86	0	59	48	0	6	44	1.29
37897090--37897273	40	4.6	40	82	6	196	23	20	27	28	1.99
37897090--37897270	80	2.3	81	83	9	221	23	20	27	27	1.99
37897171--37897320	40	3.8	38	80	10	131	25	22	28	24	1.99
37904557--37904598	16	2.7	16	79	17	52	47	19	9	23	1.78
37904644--37905103	27	17.1	26	78	5	418	20	15	21	42	1.88
37908004--37908595	27	22.0	27	80	1	614	18	18	21	42	1.90
37908004--37908593	161	3.7	159	82	3	680	18	18	21	42	1.90
37939122--37939175	25	2.1	26	83	10	67	50	12	20	16	1.78
37940369--37940441	26	2.8	26	81	6	78	52	12	10	24	1.71
37946467--37946513	24	1.9	24	83	12	60	38	0	38	23	1.55
37947188--37947816	27	23.5	27	83	3	700	43	20	16	20	1.88
37948038--37948101	26	2.5	26	84	0	83	25	20	18	35	1.95
37948053--37948108	26	2.2	26	80	6	60	23	23	21	32	1.98
37948200--37948395	28	7.0	28	83	5	254	23	22	22	30	1.99
37954094--37954168	19	3.8	19	87	6	105	36	17	12	34	1.87
37954541--37955090	44	12.5	44	78	7	490	30	24	16	29	1.96
37954585--37955013	89	4.9	89	86	1	594	29	24	15	30	1.96
37954585--37955090	177	2.9	177	86	2	660	29	23	16	29	1.96
37955023--37956418	88	15.9	88	89	0	2010	24	26	22	25	2.00
37964315--37964355	21	2.0	21	95	0	73	34	17	12	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37970303--37970489	75	2.5	75	78	5	189	24	24	21	29	1.99
37973423--37973474	23	2.3	22	75	21	54	9	23	1	65	1.32
37976495--37976561	30	2.2	30	91	0	116	17	31	31	19	1.95
37979011--37979048	12	3.2	12	85	11	51	7	21	2	68	1.28
37979919--37979955	11	3.4	11	88	0	56	29	40	8	21	1.82
37995687--37995796	12	8.8	12	73	22	70	4	21	0	72	1.08
37995710--37995769	6	10.0	6	90	0	93	1	20	0	78	0.84
37995737--37995790	18	3.1	18	75	12	51	3	20	1	74	1.07
37995710--37995780	24	3.0	23	86	8	99	2	19	0	77	0.89
37995689--37995793	24	4.8	22	76	19	78	4	20	0	73	1.07
37997493--37997559	28	2.4	28	87	2	100	29	22	25	22	1.99
37997875--37998449	27	21.3	27	80	9	278	20	17	20	41	1.90
37997875--37998449	54	10.7	53	84	3	641	20	17	20	41	1.90
37997878--37998449	81	7.1	81	83	7	653	20	16	20	41	1.90
38006430--38006720	50	5.9	50	80	3	275	29	20	28	21	1.98
38006605--38006713	49	2.2	49	82	6	132	33	20	25	21	1.97
38012698--38012779	42	1.9	42	90	7	130	37	12	9	40	1.76
38012771--38012821	20	2.5	20	87	0	66	47	15	7	29	1.74
38018487--38018830	114	3.0	118	85	2	446	29	22	20	26	1.99
38021247--38021285	20	2.0	19	85	14	53	41	17	0	41	1.50
38023099--38023341	50	4.8	50	94	0	405	25	21	30	21	1.98
38026200--38026244	23	2.0	23	82	8	56	33	4	11	51	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38026819--38027002	42	4.4	42	91	2	291	28	20	23	27	1.99
38028318--38028347	12	2.5	12	94	0	51	10	43	20	26	1.83
38031532--38031573	21	2.0	21	95	0	75	21	11	4	61	1.48
38035613--38035657	21	2.1	21	84	15	58	71	0	20	8	1.12
38035703--38035769	33	1.9	33	82	8	80	47	8	31	11	1.71
38044765--38045019	41	6.3	40	81	5	237	36	16	26	21	1.94
38044793--38044859	21	3.2	21	66	19	59	32	14	31	20	1.93
38044765--38045019	82	3.1	82	82	2	309	36	16	26	21	1.94
38044775--38044879	20	5.2	19	65	13	57	37	15	28	19	1.92
38047664--38047717	27	2.0	28	89	7	85	20	14	24	40	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211