genome.fa.s14.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  52  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13912952--13913034	41	2.0	41	97	0	157	36	16	30	16	1.92
13914081--13914337	88	2.8	90	83	10	319	37	21	9	31	1.86
13914399--13914481	28	3.0	28	80	7	89	66	1	2	30	1.12
13914401--13914501	29	3.7	27	78	8	89	65	0	2	30	1.14
13914484--13914528	19	2.3	20	80	7	56	71	4	4	20	1.21
13914491--13914562	19	3.8	19	79	1	74	66	4	5	23	1.30
13914514--13914591	28	2.8	29	81	11	92	61	2	5	30	1.31
13914829--13914931	20	5.2	20	70	17	63	32	2	1	63	1.20
13914821--13914948	19	6.8	18	69	16	64	30	2	2	64	1.18
13914820--13914947	9	13.6	9	67	18	64	30	2	2	64	1.18
13915047--13915243	91	2.1	95	83	10	248	36	10	19	33	1.86
13922012--13922057	20	2.2	21	84	7	58	43	6	8	41	1.61
13928088--13928120	7	4.7	7	100	0	66	75	0	0	24	0.80
13933536--13933570	15	2.4	14	86	9	52	25	0	0	74	0.82
13939733--13939771	8	4.8	8	96	3	69	48	15	0	35	1.45
13948515--13948568	28	1.9	28	88	0	81	29	25	24	20	1.99
13948921--13949191	27	10.1	27	82	5	327	22	15	19	42	1.89
13948921--13949191	53	5.1	54	87	3	345	22	15	19	42	1.89
13986557--13986595	19	2.1	19	100	0	78	48	15	10	25	1.76
13987902--13988091	103	1.8	103	81	6	233	22	14	27	35	1.93
14004722--14004775	29	1.9	27	85	7	72	18	7	9	64	1.45
14005629--14005653	13	1.9	13	100	0	50	32	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14012612--14012649	18	2.2	18	86	9	53	52	2	0	44	1.14
14015634--14015675	21	2.0	21	86	4	59	16	28	14	40	1.88
14018333--14018380	14	3.6	14	72	11	55	54	0	16	29	1.43
14018632--14018757	41	3.1	41	82	2	119	30	17	23	28	1.97
14018970--14019050	34	2.4	34	84	8	96	34	9	16	39	1.81
14018962--14019050	32	2.7	35	81	10	100	35	8	14	40	1.78
14019180--14019208	14	2.1	14	100	0	58	31	13	13	41	1.84
14025680--14025805	41	3.1	41	85	0	153	29	16	24	29	1.97
14027694--14027906	113	1.9	112	82	6	252	31	19	23	25	1.98
14028109--14028605	229	2.2	228	78	8	517	30	19	23	26	1.98
14028667--14028705	21	1.9	20	89	5	60	20	0	35	43	1.52
14029539--14029573	14	2.4	15	90	4	54	17	2	37	42	1.64
14032601--14032851	36	7.5	36	78	17	297	50	13	1	34	1.51
14032601--14032851	63	3.8	63	87	9	376	50	13	1	34	1.51
14032587--14032952	9	41.4	9	75	10	249	48	15	3	33	1.61
14032913--14032959	7	6.1	7	90	9	58	53	17	0	29	1.44
14038460--14038534	21	3.4	21	77	10	69	37	18	41	2	1.65
14038492--14038531	12	3.3	12	89	0	62	42	17	37	2	1.63
14038938--14039030	42	2.2	43	86	1	125	27	19	22	30	1.98
14038951--14039193	42	5.8	42	85	4	287	27	22	20	30	1.98
14038955--14039193	127	1.9	126	82	7	297	26	22	20	30	1.98
14039292--14039334	22	2.0	22	90	0	68	48	27	13	9	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14047199--14047228	16	1.9	15	93	6	51	40	0	10	50	1.36
14048025--14048058	13	2.5	14	85	9	52	32	8	20	38	1.84
14051757--14051796	21	1.9	21	100	0	80	22	25	30	22	1.99
14052374--14052411	9	4.2	9	89	0	58	28	7	13	50	1.69
14053939--14053976	15	2.5	15	84	16	51	71	2	13	13	1.26
14053938--14053981	16	2.7	15	82	10	52	68	2	13	15	1.31
14053934--14053981	17	2.9	16	78	12	53	68	2	14	14	1.30
14053991--14054044	21	2.5	20	85	11	72	51	0	14	33	1.43
14058010--14058066	26	2.2	26	87	3	80	40	17	14	28	1.88
14070313--14070361	11	4.2	12	75	19	50	59	2	0	38	1.09
14076600--14076631	15	2.1	15	94	0	55	28	0	3	68	1.04
14077450--14077488	16	2.4	16	83	8	53	53	5	0	41	1.23
14078400--14078540	70	2.0	70	100	0	282	24	9	26	39	1.86
14085848--14085902	26	2.1	26	100	0	110	34	10	21	32	1.89
14087506--14087536	16	1.9	16	100	0	62	74	0	6	19	1.03
14099222--14099316	44	2.1	45	86	5	131	32	5	27	34	1.79
14099473--14099507	18	2.0	18	88	5	54	54	0	0	45	0.99
14099453--14099767	120	2.6	118	92	3	499	48	3	3	44	1.35
14099591--14099627	16	2.2	17	86	13	51	54	0	2	43	1.14
14099710--14099746	16	2.2	17	86	13	51	54	0	2	43	1.14
14099683--14099779	28	3.5	28	73	14	94	51	1	2	45	1.19
14099730--14099973	91	2.7	91	83	6	241	47	3	3	45	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14099758--14099934	44	3.8	44	71	18	128	47	2	3	46	1.31
14099844--14099985	46	3.1	45	67	12	110	47	5	3	42	1.44
14107694--14107751	21	2.8	21	70	15	57	51	10	3	34	1.53
14112938--14113080	72	2.0	72	97	0	268	20	17	19	42	1.89
14113265--14113365	21	4.9	21	75	18	97	40	2	0	56	1.14
14113265--14113352	39	2.4	37	82	14	103	40	2	0	56	1.11
14113265--14113352	38	2.4	38	82	14	105	40	2	0	56	1.11
14113425--14113503	22	3.5	22	78	11	81	41	0	1	56	1.07
14113492--14113520	15	1.9	15	100	0	58	41	0	3	55	1.17
14113481--14113563	12	6.8	12	74	16	55	39	2	3	54	1.31
14113659--14113714	21	2.7	21	85	0	85	58	0	3	37	1.15
14121237--14121278	7	6.0	7	100	0	84	42	0	0	57	0.99
14121360--14121403	20	2.2	19	84	8	52	50	2	4	43	1.35
14121361--14121413	21	2.5	22	72	12	56	49	1	3	45	1.31
14121531--14121600	20	3.4	22	83	15	87	54	0	0	45	0.99
14121529--14121672	21	7.2	20	72	21	88	54	2	0	43	1.11
14121510--14121634	55	2.2	57	81	14	154	55	0	0	44	0.99
14121582--14121619	14	2.7	14	88	8	51	60	0	0	39	0.97
14121562--14121641	36	2.3	37	89	8	123	58	0	0	41	0.98
14121596--14121672	22	3.5	22	75	18	79	53	3	0	42	1.19
14121669--14121716	11	4.4	11	75	0	51	75	8	4	12	1.18
14121678--14121740	15	4.1	15	72	8	54	74	4	4	15	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14125095--14125226	40	3.3	39	81	8	124	31	21	25	22	1.98
14125112--14125247	40	3.4	41	82	5	154	35	21	22	20	1.96
14125629--14125669	21	2.0	21	90	4	66	29	4	21	43	1.73
14125730--14125831	14	7.2	14	77	5	62	19	0	41	38	1.58
14125791--14125832	7	6.0	7	100	0	84	14	0	57	28	1.38
14125840--14125904	34	1.9	34	87	6	96	23	0	30	46	1.53
14126013--14126067	21	2.6	21	76	2	65	25	0	36	38	1.56
14126429--14126462	16	2.1	16	88	5	50	70	2	2	23	1.15
14126715--14126776	27	2.3	27	83	5	72	66	11	3	19	1.37
14126980--14127066	41	2.1	41	93	0	147	27	16	17	39	1.90
14130990--14131143	43	3.6	42	86	5	195	16	14	32	35	1.90
14134825--14134856	15	2.1	15	100	0	64	28	25	18	28	1.98
14134829--14134862	15	2.4	14	90	9	52	29	23	20	26	1.99
14141995--14142025	12	2.6	12	94	0	53	22	0	6	70	1.09
14142838--14143030	98	2.0	98	94	2	343	25	9	25	38	1.87
14143398--14144010	23	26.3	23	70	15	90	43	18	12	26	1.85
14143380--14144041	93	7.1	93	92	0	1063	42	17	12	26	1.85
14143388--14144041	187	3.5	187	95	0	1130	42	18	12	26	1.85
14144779--14144905	28	4.5	28	89	0	182	30	26	11	30	1.92
14157360--14157945	44	13.5	43	72	15	318	27	20	23	27	1.99
14157443--14157908	84	5.4	87	72	16	292	28	21	23	26	1.99
14157444--14157689	134	1.9	127	81	9	298	28	21	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14157444--14157812	173	2.1	177	80	9	418	28	21	23	26	1.99
14157346--14157944	218	2.8	216	89	2	905	28	21	23	26	1.99
14159130--14159160	12	2.6	12	94	0	53	22	0	6	70	1.09
14159974--14160170	98	2.0	98	94	2	342	28	9	24	37	1.87
14160934--14160979	22	2.1	22	83	0	56	71	2	4	21	1.14
14164592--14164629	20	2.0	20	89	5	60	44	31	18	5	1.72
14164907--14164998	25	3.8	23	72	13	69	34	2	5	57	1.34
14177415--14177461	17	2.8	17	76	20	53	53	6	4	36	1.46
14177717--14177776	30	2.0	31	87	9	88	43	0	36	20	1.52
14178386--14178423	8	4.6	8	81	18	51	71	0	2	26	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211