genome.fa.s14.2.7.7.80.10.50.1000.191.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  191  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56584157--56584187	15	2.0	16	93	6	55	58	6	3	32	1.40
56584212--56584302	41	2.2	42	76	9	98	53	3	9	32	1.50
56585850--56586282	44	9.8	44	78	8	385	22	23	25	28	1.99
56585865--56586295	89	4.8	89	85	4	419	22	23	25	28	1.99
56585909--56586295	133	2.9	133	82	6	442	22	23	24	29	1.99
56585862--56586282	222	1.9	222	86	1	594	22	23	25	28	1.99
56587487--56587531	22	2.0	23	86	4	65	0	24	0	75	0.80
56589435--56589542	10	11.4	9	71	17	69	66	0	3	28	1.15
56589470--56589543	18	3.8	20	78	10	57	66	1	2	29	1.14
56593468--56593511	21	2.0	20	83	12	52	52	4	6	36	1.49
56594514--56594550	19	1.9	19	89	10	58	21	2	29	45	1.65
56607728--56607761	12	2.8	12	95	4	59	41	8	0	50	1.34
56611490--56611524	18	1.9	18	88	0	52	17	0	14	68	1.21
56616226--56616277	24	2.2	25	79	10	63	53	1	5	38	1.36
56616232--56616287	24	2.4	24	84	3	78	51	1	5	41	1.35
56616714--56616742	11	2.6	11	100	0	58	65	10	10	13	1.47
56618239--56618525	46	6.6	45	73	12	194	27	20	21	31	1.98
56618150--56618529	170	2.2	170	88	4	541	26	20	20	31	1.98
56630948--56630999	24	2.2	25	79	10	63	53	1	5	38	1.36
56630954--56631009	24	2.4	24	84	3	78	51	1	5	41	1.35
56633448--56633510	30	2.1	30	93	0	108	22	3	17	57	1.54
56634915--56634952	18	2.1	18	85	9	51	42	13	5	39	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56639928--56639969	22	2.0	21	85	4	57	69	0	7	23	1.13
56653726--56653920	98	2.0	98	92	0	327	36	23	9	30	1.87
56654775--56654824	22	2.2	22	89	3	73	62	6	2	30	1.31
56655379--56655510	19	6.8	19	91	3	219	36	15	10	37	1.82
56655372--56655509	59	2.4	59	91	4	221	36	14	10	38	1.80
56656824--56656896	36	2.0	36	97	0	137	21	23	19	35	1.96
56657924--56657954	16	1.9	16	100	0	62	35	25	6	32	1.82
56658616--56658641	6	4.3	6	100	0	52	30	53	0	15	1.42
56676442--56676497	18	3.0	19	77	15	55	17	21	5	55	1.62
56676656--56676763	57	1.9	56	90	5	173	48	4	9	37	1.56
56677089--56677157	21	3.5	20	70	18	54	13	13	14	59	1.62
56677426--56677534	19	5.6	20	72	14	77	20	12	4	62	1.47
56677433--56677542	41	2.8	40	82	12	122	18	13	6	61	1.52
56677474--56677534	20	3.2	18	75	11	68	21	13	1	63	1.37
56677474--56677541	18	3.6	18	75	9	64	20	13	4	61	1.48
56678217--56678262	20	2.2	21	85	11	60	21	10	13	54	1.69
56678254--56678294	19	2.2	19	90	0	64	34	7	12	46	1.69
56686860--56686911	25	2.1	25	100	0	104	55	11	7	25	1.61
56689480--56689547	16	4.2	16	94	0	118	27	0	36	35	1.58
56689480--56689547	32	2.1	32	100	0	136	27	0	36	35	1.58
56689771--56689812	15	2.9	15	82	10	52	52	0	0	47	1.00
56690071--56690123	27	2.1	27	82	10	67	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56697985--56698058	4	18.0	4	76	18	64	72	2	22	1	1.04
56697989--56698058	29	2.4	28	88	9	97	72	2	22	1	1.05
56697971--56698046	18	3.9	18	76	21	66	75	2	18	3	1.08
56697983--56698046	33	2.0	33	90	3	103	75	3	20	1	1.03
56698913--56699052	40	3.6	39	73	8	124	26	17	24	31	1.97
56699380--56699413	17	1.9	18	88	5	52	29	5	14	50	1.67
56707776--56707930	43	3.7	41	80	13	181	21	20	29	29	1.98
56707773--56707930	84	1.9	84	87	7	232	21	20	29	29	1.98
56708091--56708122	16	1.9	17	93	6	57	40	0	21	37	1.54
56713733--56713796	27	2.4	27	86	5	85	23	18	25	32	1.97
56716515--56716746	121	1.9	121	89	0	356	30	25	8	35	1.86
56718330--56718375	21	2.2	21	84	0	56	21	10	34	32	1.88
56721153--56721183	15	2.1	15	100	0	62	25	19	12	41	1.87
56722435--56722469	18	2.1	17	89	10	54	48	2	0	48	1.16
56724402--56724535	29	4.7	29	89	1	180	32	24	5	38	1.78
56724402--56724556	57	2.7	57	85	3	213	31	23	5	39	1.77
56724394--56724587	29	6.7	29	83	2	167	30	22	6	40	1.80
56725101--56725160	17	3.5	17	68	8	50	31	38	25	5	1.77
56725266--56725319	25	2.2	24	90	3	81	85	0	14	0	0.61
56725266--56725311	11	3.9	11	84	15	65	86	0	13	0	0.56
56737624--56739053	151	9.3	148	83	7	1348	26	16	19	36	1.93
56737614--56739053	74	18.7	75	85	6	1401	26	16	19	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56737624--56739053	304	4.6	301	81	9	1433	26	16	19	36	1.93
56739244--56739362	29	4.1	29	84	1	157	32	18	5	42	1.74
56739252--56739362	58	1.9	59	92	1	188	34	18	5	41	1.74
56739616--56739661	19	2.3	22	82	17	64	58	0	41	0	0.98
56739714--56739765	3	18.0	3	84	15	58	73	0	26	0	0.84
56739715--56739785	6	12.3	6	78	11	51	76	0	22	1	0.87
56739948--56740007	17	3.5	17	68	8	50	31	38	25	5	1.77
56740098--56740133	20	1.9	20	88	11	58	83	0	16	0	0.65
56740256--56740318	32	1.9	34	87	6	94	19	6	9	65	1.43
56741147--56741193	25	1.9	25	82	4	60	46	6	4	42	1.48
56741248--56741281	12	2.8	12	90	0	59	44	0	0	55	0.99
56749421--56749454	6	5.7	6	92	0	50	0	17	8	73	1.08
56749421--56749454	12	2.8	12	90	0	59	0	17	8	73	1.08
56752904--56752960	15	3.6	15	74	19	53	43	0	1	54	1.10
56753157--56753210	19	2.8	19	86	5	74	37	9	12	40	1.76
56753189--56753236	22	2.2	22	88	7	71	39	4	16	39	1.68
56753157--56753236	19	3.9	21	79	14	71	37	7	13	41	1.73
56753189--56753246	22	2.7	23	81	7	68	37	3	15	43	1.64
56753666--56753705	3	13.3	3	84	10	55	32	0	0	67	0.91
56753650--56753704	15	3.7	15	74	16	53	30	0	1	67	1.01
56753652--56753703	12	4.1	12	80	14	52	28	0	1	69	0.99
56754502--56754571	35	2.0	35	100	0	140	25	11	22	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56760296--56760431	44	3.1	44	62	8	105	25	31	23	19	1.98
56760199--56760691	88	5.6	88	86	0	646	28	28	22	20	1.99
56760692--56761066	44	8.7	44	82	6	444	28	16	26	29	1.97
56760693--56761066	126	2.9	128	86	7	495	28	16	26	29	1.96
56760692--56761028	170	2.0	170	88	1	496	29	15	25	29	1.96
56761373--56761488	44	2.7	44	78	4	110	29	18	22	29	1.98
56761908--56762003	21	4.8	19	91	5	138	38	9	14	37	1.79
56761909--56761992	21	4.1	21	93	3	145	39	9	13	38	1.77
56761921--56762026	19	5.0	22	76	19	75	38	7	15	38	1.75
56761915--56762026	42	2.7	40	85	10	138	38	8	14	39	1.75
56761992--56762036	23	2.0	23	86	4	65	33	4	15	46	1.66
56762195--56762233	19	2.0	21	85	10	55	15	10	5	69	1.34
56762454--56762496	3	14.3	3	85	9	61	32	0	0	67	0.91
56762438--56762495	15	3.7	15	76	13	55	31	0	1	67	1.01
56766660--56766704	24	1.9	24	90	4	74	31	4	13	51	1.61
56769095--56769126	12	2.7	12	90	0	55	50	0	0	50	1.00
56771052--56771092	19	2.1	20	86	4	57	56	12	9	21	1.65
56771999--56772078	21	3.8	21	81	5	90	46	12	28	12	1.78
56775011--56775056	24	1.9	24	86	0	65	56	21	10	10	1.64
56787035--56787124	44	2.0	44	89	4	137	37	8	4	48	1.55
56787839--56787872	15	2.1	16	89	10	52	58	0	0	41	0.98
56787790--56787865	31	2.4	30	77	12	82	46	2	0	51	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56792801--56792839	18	2.2	19	86	9	55	35	2	0	61	1.10
56797571--56797626	7	8.8	6	79	16	60	44	0	8	46	1.34
56797571--56797626	13	4.4	12	82	13	60	44	0	8	46	1.34
56798085--56798433	123	2.8	125	90	3	573	29	16	21	32	1.95
56801443--56801516	38	2.0	37	84	7	96	47	1	8	43	1.41
56801557--56801625	17	3.9	17	71	15	59	49	1	5	43	1.35
56801551--56801631	37	2.2	36	76	8	85	48	1	7	43	1.39
56801443--56801686	116	2.1	116	91	1	391	45	6	7	39	1.59
56801680--56804372	23	120.0	23	73	16	1468	25	0	25	48	1.55
56801760--56801791	15	2.2	15	94	5	57	21	0	21	56	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211