genome.fa.s14.2.7.7.80.10.50.1000.194.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  194  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57317234--57317285	8	6.4	8	82	12	52	34	0	1	63	1.06
57317106--57317352	122	2.0	123	96	0	460	48	1	9	40	1.44
57317354--57317425	33	2.2	32	88	11	103	40	1	6	51	1.37
57318549--57318602	18	3.1	17	81	7	63	44	0	18	37	1.50
57318697--57318797	37	2.6	37	79	7	103	26	18	22	31	1.97
57321418--57321460	21	2.0	21	100	0	86	44	0	13	41	1.44
57324935--57324990	17	3.3	17	87	0	85	50	0	7	42	1.30
57332849--57332874	12	2.2	12	100	0	52	34	23	19	23	1.96
57332993--57333043	24	2.2	24	83	10	63	43	17	5	33	1.73
57338839--57338953	61	1.9	61	83	0	149	47	4	1	46	1.32
57340710--57341070	179	2.0	178	89	2	555	30	14	18	36	1.91
57343110--57343185	38	2.0	38	100	0	152	15	23	21	39	1.92
57346961--57346997	17	2.2	17	90	9	58	18	5	0	75	0.99
57349065--57349134	19	3.6	19	72	11	70	54	5	14	25	1.62
57349055--57349133	38	2.1	39	92	2	133	50	7	12	29	1.68
57350259--57350284	11	2.4	11	100	0	52	0	7	0	92	0.39
57350987--57351041	23	2.4	22	79	11	56	23	5	10	60	1.51
57351077--57351116	16	2.5	16	87	0	53	40	12	0	47	1.41
57352982--57353017	19	2.0	18	89	10	56	27	0	0	72	0.85
57354608--57354674	22	2.9	22	74	10	71	43	16	13	26	1.85
57357483--57357522	20	2.1	18	86	9	53	65	0	0	35	0.93
57360779--57360817	15	2.4	16	87	8	53	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57361334--57361369	13	2.8	13	100	0	72	36	0	8	55	1.30
57365085--57365145	29	2.1	29	100	0	122	40	21	21	16	1.91
57366132--57366196	27	2.4	27	78	2	76	10	13	40	35	1.80
57369288--57369334	22	2.0	24	84	8	62	21	10	12	55	1.67
57376014--57376108	41	2.3	41	96	0	172	28	20	27	24	1.99
57376320--57376346	13	2.1	13	100	0	54	29	14	25	29	1.95
57376279--57376387	54	2.0	54	98	0	209	28	20	27	23	1.99
57376333--57376466	41	3.3	41	91	0	223	29	18	27	24	1.98
57378839--57378938	43	2.3	43	93	3	166	18	18	30	34	1.94
57378839--57378956	43	2.7	43	87	5	123	19	20	29	30	1.97
57379360--57379455	21	4.6	21	79	5	95	9	42	12	35	1.75
57379443--57379583	66	2.1	66	85	5	187	14	26	18	40	1.89
57379478--57379606	66	2.0	66	87	3	188	15	23	18	42	1.88
57384985--57385414	9	49.8	9	66	24	189	31	0	22	44	1.59
57384985--57385414	25	16.9	25	73	17	263	31	0	22	44	1.59
57385105--57385132	13	2.2	13	100	0	56	35	0	25	39	1.56
57385096--57385185	22	4.1	22	74	21	82	34	1	21	43	1.60
57385160--57385310	19	8.5	19	62	25	62	33	0	21	45	1.57
57385334--57385417	43	2.0	43	85	0	114	26	0	25	48	1.51
57385536--57385616	12	7.5	11	68	28	50	51	2	0	45	1.14
57387957--57388038	41	2.0	42	83	9	107	34	23	12	30	1.91
57388719--57388812	39	2.4	40	82	7	129	39	38	2	20	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57389875--57389931	22	2.5	22	86	8	71	50	36	0	12	1.40
57389875--57389936	7	8.4	7	82	10	70	51	35	0	12	1.40
57389875--57389936	15	4.2	14	82	10	70	51	35	0	12	1.40
57390221--57390774	114	4.9	111	80	8	539	27	25	23	24	2.00
57399058--57399092	15	2.3	15	90	5	52	48	0	17	34	1.47
57404959--57405012	28	2.0	27	85	3	72	25	3	1	68	1.16
57405045--57405084	17	2.4	17	87	8	55	15	7	0	77	0.98
57413671--57413714	21	2.1	21	83	8	54	6	11	4	77	1.11
57414423--57414887	44	10.2	44	70	15	211	27	21	18	32	1.96
57414450--57414878	142	3.0	142	96	0	786	27	20	18	33	1.96
57414653--57414834	98	1.9	97	80	6	215	29	19	18	32	1.96
57414869--57415740	131	6.7	131	92	0	1406	23	24	21	30	1.99
57417980--57418020	13	3.0	15	86	13	54	78	0	14	7	0.96
57418937--57419082	37	4.0	37	91	1	233	24	22	15	36	1.93
57419046--57419268	52	4.6	46	87	7	257	28	22	13	34	1.93
57419089--57419262	52	3.3	52	91	1	267	27	23	13	35	1.92
57419046--57419262	104	2.1	100	85	6	285	27	23	13	35	1.93
57421767--57421960	95	2.0	95	92	2	318	27	23	18	30	1.97
57422018--57424421	88	27.3	88	92	0	3554	26	25	22	26	2.00
57425662--57425691	16	1.9	15	93	6	51	0	13	0	86	0.57
57431082--57431122	13	3.0	15	86	13	54	78	0	14	7	0.96
57432726--57432764	1	39.0	1	84	0	51	0	7	0	92	0.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57432726--57432761	10	3.6	10	100	0	72	0	8	0	91	0.41
57432717--57432761	20	2.2	20	92	0	72	2	11	0	86	0.65
57433625--57433682	25	2.3	25	85	11	75	8	12	10	68	1.38
57433608--57433688	31	2.8	29	83	5	92	11	9	11	67	1.41
57438241--57438298	26	2.2	26	84	6	71	60	0	3	36	1.14
57445076--57445109	12	2.9	12	86	4	52	23	26	0	50	1.50
57450424--57450458	6	5.5	6	87	12	52	14	17	0	68	1.21
57457226--57457254	5	5.8	5	100	0	58	62	0	0	37	0.96
57461983--57462028	18	2.3	20	75	10	51	4	32	0	63	1.14
57466911--57466988	26	3.0	26	76	10	70	48	3	7	39	1.50
57467015--57467133	58	2.0	59	82	4	143	47	4	11	36	1.59
57468926--57469044	44	2.7	44	81	5	116	29	23	20	26	1.99
57469141--57469897	45	16.9	45	76	8	630	30	24	16	28	1.96
57469289--57469897	179	3.4	180	76	7	583	30	24	16	28	1.97
57469313--57469817	134	3.8	134	82	4	601	29	25	16	29	1.96
57469146--57469915	224	3.4	223	79	9	814	30	24	16	29	1.96
57470857--57470900	13	3.3	13	82	14	54	6	6	2	84	0.86
57470864--57470900	19	2.0	20	89	10	60	8	5	2	83	0.88
57471355--57471381	7	3.9	7	100	0	54	11	0	0	88	0.50
57471337--57471382	7	5.9	8	85	10	51	6	2	4	86	0.75
57477759--57477836	26	3.0	26	76	10	70	48	3	7	39	1.50
57477863--57477981	58	2.0	59	82	4	143	47	4	11	36	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57480274--57480552	94	3.0	93	82	9	311	50	7	11	30	1.66
57493627--57493661	17	2.1	17	94	0	61	17	2	34	45	1.63
57498894--57499257	181	2.0	181	94	1	631	26	20	25	28	1.99
57527393--57527424	16	2.0	16	93	0	55	56	15	0	28	1.40
57528435--57528492	19	2.7	22	84	10	68	36	8	17	37	1.80
57528676--57528720	23	2.0	23	81	0	54	22	0	15	62	1.33
57533963--57534003	6	6.8	6	97	0	73	36	29	17	17	1.92
57534954--57534996	21	2.0	21	90	0	68	37	18	4	39	1.72
57535167--57535228	31	2.0	30	81	12	72	29	14	16	40	1.88
57536982--57537025	23	1.9	23	85	0	61	50	22	9	18	1.75
57539366--57539598	121	1.9	121	90	0	367	28	21	21	27	1.99
57542315--57542546	121	1.9	121	88	0	347	27	19	21	31	1.98
57565802--57565844	22	2.0	22	86	9	61	27	9	2	60	1.40
57568656--57568699	5	8.8	5	100	0	88	40	0	20	38	1.53
57571353--57571385	17	1.9	17	88	11	50	57	0	3	39	1.14
57579456--57579534	25	3.3	23	75	13	70	32	21	27	17	1.96
57579466--57579532	25	2.8	24	78	13	75	32	20	28	17	1.96
57579553--57579625	38	1.9	38	88	0	110	26	15	27	31	1.95
57580090--57580184	50	1.9	50	86	0	136	30	17	22	29	1.97
57580245--57580593	50	7.0	50	74	2	324	33	23	19	23	1.97
57580197--57580593	100	4.0	100	89	0	578	32	22	20	24	1.98
57580622--57581044	44	9.5	44	74	10	238	30	20	21	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57580901--57581109	44	4.8	44	84	5	185	29	21	25	23	1.99
57582562--57582602	22	1.9	21	85	5	55	31	4	2	60	1.30
57583059--57583199	72	2.0	72	94	0	246	28	18	18	34	1.95
57584633--57584657	13	1.9	13	100	0	50	16	16	0	68	1.22
57595967--57596051	37	2.3	37	87	0	116	38	25	5	29	1.79
57596270--57596514	41	6.0	41	92	0	400	24	28	18	29	1.98
57596733--57596778	17	2.8	17	87	6	60	43	17	2	36	1.61
57599756--57599830	36	2.1	35	80	14	82	57	1	4	37	1.26
57600311--57600347	9	4.1	9	92	0	65	29	10	13	45	1.77
57605058--57605107	26	2.0	26	88	4	75	42	10	18	30	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211