genome.fa.s14.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  155  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45850325--45850789	100	4.7	100	92	1	722	21	26	23	28	1.99
45852231--45852279	7	7.0	7	78	17	57	14	18	0	67	1.23
45852242--45852279	13	2.9	14	92	7	62	13	18	0	68	1.21
45852791--45852878	1	88.0	1	72	0	59	1	9	4	85	0.79
45852791--45852878	13	6.8	12	79	14	70	1	9	4	85	0.79
45852790--45852853	21	3.0	21	86	11	85	0	7	7	84	0.78
45852791--45852876	23	3.7	22	83	9	82	1	9	4	84	0.80
45856941--45857023	24	3.2	25	77	14	71	55	2	7	34	1.41
45857129--45857191	25	2.4	27	79	10	69	58	3	4	33	1.35
45857322--45857374	28	2.0	26	85	14	72	60	5	0	33	1.20
45857328--45857380	22	2.5	21	77	19	56	62	7	0	30	1.23
45857461--45857485	13	1.9	13	100	0	50	40	8	20	32	1.81
45860174--45860739	126	4.5	126	86	1	706	30	22	16	30	1.96
45860173--45860739	253	2.3	250	85	1	740	30	22	16	30	1.96
45860973--45861076	40	2.5	42	84	3	122	18	28	28	24	1.98
45861446--45861517	37	2.0	36	91	8	119	47	2	1	48	1.25
45861470--45861497	5	5.6	5	100	0	56	57	0	0	42	0.99
45862589--45862630	15	2.7	16	77	3	50	35	2	0	61	1.09
45867082--45867122	4	10.2	4	100	0	82	24	0	24	51	1.49
45869959--45870000	20	2.2	19	86	4	57	42	2	0	54	1.13
45876903--45876943	14	2.9	15	79	13	52	17	2	7	73	1.17
45879112--45879176	26	2.5	26	85	7	78	24	7	1	66	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45883131--45883171	21	1.9	21	85	5	55	31	41	19	7	1.79
45885539--45885576	16	2.4	16	86	8	51	57	0	13	28	1.36
45885602--45886116	252	2.0	256	82	4	630	40	10	11	37	1.76
45887686--45887811	47	2.7	46	84	7	164	31	14	26	26	1.95
45888862--45888907	21	2.2	21	88	0	65	19	39	19	21	1.93
45890682--45890720	18	2.2	18	100	0	78	48	20	5	25	1.70
45899666--45899713	25	1.9	25	86	0	69	22	27	20	29	1.99
45899741--45899814	25	3.0	25	74	2	78	22	28	18	29	1.98
45909290--45909320	15	2.1	15	100	0	62	19	22	6	51	1.69
45913198--45913568	125	3.0	124	89	1	548	30	10	21	37	1.87
45914486--45914531	12	3.4	14	80	16	53	28	0	13	58	1.35
45916433--45916486	26	2.1	26	86	6	74	31	20	22	25	1.98
45917013--45917070	13	4.5	13	76	6	55	32	6	10	50	1.63
45922858--45922896	3	13.3	3	83	5	53	25	2	2	69	1.14
45924717--45924756	18	2.2	18	91	8	64	65	0	0	35	0.93
45924780--45924837	27	2.2	25	85	11	73	56	1	6	34	1.36
45934094--45934124	16	1.9	16	93	0	53	41	0	38	19	1.51
45936621--45936973	43	8.3	43	77	4	347	29	27	16	26	1.97
45936621--45936975	129	2.8	127	80	4	383	30	27	16	25	1.97
45937241--45937327	43	2.0	43	88	0	129	44	10	11	33	1.74
45939038--45939172	66	2.0	66	100	0	270	35	23	13	27	1.92
45941829--45941951	7	16.6	7	67	19	63	37	39	0	21	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45941826--45941890	22	3.0	21	72	14	62	38	38	0	23	1.55
45942402--45942661	81	3.2	82	84	4	337	34	26	19	18	1.95
45942396--45942661	41	6.5	41	85	4	324	33	26	19	20	1.96
45955204--45955267	27	2.4	27	81	0	74	37	34	15	12	1.85
45955211--45955262	27	1.9	27	88	0	77	40	36	11	11	1.78
45956341--45956379	11	3.5	11	89	0	51	28	2	38	30	1.70
45964956--45964984	15	1.9	15	100	0	58	27	34	3	34	1.74
45971350--45971399	25	2.0	25	92	0	82	26	26	22	26	2.00
45975445--45975496	24	2.2	24	85	0	68	51	7	5	34	1.54
45976166--45976203	20	1.9	20	88	0	58	42	5	5	47	1.48
45980194--45980283	3	30.0	3	100	0	180	66	0	0	33	0.92
45986428--45986485	6	9.7	6	100	0	116	68	15	0	15	1.20
45986420--45986511	18	4.9	18	80	7	85	70	13	4	11	1.30
45986476--45986511	14	2.6	14	86	0	54	75	8	11	5	1.19
45986466--45986553	44	2.0	46	84	8	119	69	7	9	13	1.36
45986905--45986943	21	1.9	21	89	5	62	69	0	15	15	1.20
45988139--45988406	87	3.1	87	88	2	380	27	22	26	24	1.99
45988766--45990148	141	9.9	141	90	3	2152	33	18	20	27	1.96
45988766--45990148	283	4.9	282	90	3	2161	33	18	20	27	1.96
45989580--45990097	44	11.1	44	66	19	203	33	19	20	26	1.97
45988766--45990148	424	3.3	420	91	3	2173	33	18	20	27	1.96
45989768--45989951	98	1.9	97	80	6	219	32	19	19	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45997284--45997355	27	2.6	27	86	2	99	13	38	12	34	1.83
45997544--45997838	44	6.6	44	72	10	141	31	21	17	29	1.96
45997592--45997846	138	1.9	137	79	5	291	32	20	18	29	1.96
45997488--45997843	182	2.0	182	90	0	559	30	20	18	30	1.97
45998011--45998177	45	3.7	45	77	7	151	26	20	22	30	1.98
45998265--45998968	123	5.6	123	80	6	739	26	25	15	32	1.96
45998637--45998737	51	2.0	51	92	0	166	30	22	14	31	1.94
45998658--45998824	87	1.9	87	80	0	190	29	26	16	26	1.97
45998759--45998895	51	2.7	51	80	4	152	25	29	14	30	1.95
45998822--45998967	72	2.0	72	86	2	204	24	25	13	36	1.92
45998510--45999137	261	2.4	261	86	1	864	27	24	16	31	1.96
45998894--45998990	51	1.9	51	91	0	158	30	21	14	32	1.93
45998974--45999043	36	1.9	36	88	0	104	28	20	21	30	1.98
45998931--45999094	87	1.9	87	82	2	204	30	23	15	29	1.96
45999132--45999609	132	3.6	132	88	2	699	24	24	20	30	1.98
45999540--45999644	44	2.4	44	80	3	131	26	26	17	29	1.97
46003477--46004139	88	7.5	88	85	1	655	27	23	20	28	1.99
46003788--46003933	44	3.3	43	65	16	109	22	26	24	26	2.00
46003638--46004128	266	1.8	265	84	1	669	27	23	20	28	1.99
46003967--46004110	43	3.3	43	67	18	116	25	23	20	31	1.98
46010815--46010859	22	2.0	22	86	4	63	37	17	6	37	1.76
46013226--46013262	14	2.6	14	95	0	65	18	24	32	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46020287--46020312	11	2.4	11	100	0	52	42	15	0	42	1.47
46020763--46020793	15	2.1	15	94	5	55	70	9	0	19	1.14
46025938--46025974	18	2.0	18	89	5	56	37	16	13	32	1.87
46029792--46029907	57	2.0	57	89	0	178	29	20	7	42	1.80
46034937--46034969	14	2.4	14	90	10	50	21	0	30	48	1.50
46042518--46042809	50	5.8	49	80	5	262	24	27	20	27	1.99
46042567--46042809	100	2.4	100	83	6	290	24	28	20	26	1.99
46053374--46053551	27	6.6	27	76	2	133	28	25	15	31	1.95
46055152--46055231	22	3.6	22	79	12	101	18	21	17	42	1.89
46057830--46057961	65	2.0	65	97	0	246	33	27	9	29	1.89
46058797--46058904	50	2.2	50	88	6	173	24	23	6	46	1.75
46062576--46062838	81	3.2	80	78	9	275	23	22	11	42	1.85
46062576--46062838	27	9.7	27	78	5	239	23	22	11	42	1.85
46075606--46075690	44	1.9	44	97	0	161	41	15	7	36	1.74
46076667--46076716	10	4.8	10	81	18	57	60	4	0	36	1.16
46079751--46079792	22	2.0	22	86	13	63	54	0	0	45	0.99
46079754--46079787	16	2.2	15	89	5	50	55	0	0	44	0.99
46085387--46085460	37	2.0	37	100	0	148	54	18	13	13	1.71
46090722--46090766	9	5.0	9	86	0	63	24	28	2	44	1.66
46091389--46091526	69	2.0	69	100	0	276	33	27	15	23	1.95
46093509--46093546	6	6.5	6	96	3	69	47	18	18	15	1.83
46094868--46094969	41	2.5	40	85	6	132	26	25	19	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46096621--46096645	13	1.9	13	100	0	50	68	24	0	8	1.16
46097401--46097531	61	2.2	57	86	5	172	51	4	3	40	1.41
46105447--46105520	32	2.3	32	85	0	94	32	13	27	27	1.94
46114162--46114188	3	9.0	3	100	0	54	33	33	0	33	1.58
46116660--46116700	17	2.4	18	80	12	50	29	0	0	70	0.87
46118701--46118827	63	2.0	63	100	0	254	29	9	14	46	1.76
46119247--46119290	23	1.9	23	85	0	61	40	0	2	56	1.11
46120314--46120360	25	2.0	25	83	8	62	65	2	27	4	1.22
46124928--46125043	32	3.6	32	85	3	144	30	16	16	37	1.91
46127948--46128037	43	2.1	43	81	4	101	28	18	15	36	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211