genome.fa.s14.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  119  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33618997--33619059	25	2.6	25	75	9	67	42	9	0	47	1.36
33619460--33619554	43	2.2	43	77	3	102	25	20	18	35	1.95
33619477--33619595	43	2.8	43	78	0	121	27	18	19	34	1.95
33619874--33620007	66	2.0	65	85	5	180	11	25	20	42	1.85
33625886--33625986	28	3.5	29	66	19	77	45	3	5	44	1.46
33625780--33626150	59	6.4	59	85	1	427	44	4	6	44	1.50
33625796--33626150	117	3.1	118	89	2	513	44	4	5	44	1.49
33625815--33626150	176	1.9	173	86	3	476	44	4	5	45	1.47
33627132--33627193	25	2.5	25	83	0	79	27	20	30	20	1.98
33639263--33639296	17	2.0	17	88	0	50	52	14	0	32	1.42
33643413--33643699	149	1.9	149	93	0	493	42	16	10	31	1.81
33647309--33647347	17	2.1	20	86	13	57	71	2	5	20	1.17
33653340--33653461	40	3.1	40	90	3	178	37	24	0	37	1.56
33654414--33654479	32	2.1	32	91	8	109	37	0	0	62	0.96
33654411--33654481	31	2.3	30	88	11	108	35	0	0	64	0.94
33654418--33654481	16	4.0	16	73	6	58	32	0	0	67	0.91
33659229--33659304	23	3.3	23	92	0	125	23	19	25	31	1.98
33659434--33659506	38	1.9	37	86	8	103	45	1	21	31	1.61
33664544--33664569	6	4.3	6	100	0	52	53	15	15	15	1.73
33665403--33665448	18	2.5	18	86	10	58	28	2	2	67	1.14
33668312--33668337	11	2.4	11	100	0	52	84	0	0	15	0.62
33668332--33668366	18	1.9	18	94	0	61	74	2	0	22	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33668902--33668951	18	2.7	18	90	6	73	32	0	8	60	1.26
33670968--33671022	19	2.9	19	81	13	60	40	1	5	52	1.35
33670984--33671022	19	2.1	19	90	4	62	38	0	5	56	1.22
33674690--33674747	11	5.2	11	87	2	80	22	32	1	43	1.64
33674690--33674765	22	3.4	23	84	14	97	25	31	1	42	1.63
33674689--33674763	33	2.2	33	84	9	98	24	32	1	42	1.63
33674689--33674765	11	6.9	11	74	21	72	24	31	1	42	1.63
33674725--33674824	51	2.0	51	88	4	148	26	27	3	44	1.69
33676930--33676978	21	2.3	21	82	6	64	32	38	26	2	1.68
33677221--33677708	22	22.5	22	84	4	643	45	30	0	24	1.56
33677221--33677837	43	14.4	44	84	5	768	45	29	0	25	1.55
33677221--33677837	130	4.8	131	86	5	789	45	29	0	25	1.55
33677691--33677788	8	13.2	8	70	14	68	44	28	0	26	1.54
33677707--33677837	21	6.1	22	85	7	171	45	27	0	26	1.54
33680906--33681461	126	4.4	125	83	6	683	31	22	16	30	1.95
33680905--33681461	252	2.2	251	85	3	757	31	22	15	30	1.95
33688091--33688148	30	1.9	30	89	0	89	41	3	24	31	1.71
33688360--33688391	13	2.5	13	94	0	55	31	0	12	56	1.37
33688485--33688726	50	4.7	50	85	4	288	26	23	28	20	1.99
33688485--33688734	100	2.4	103	86	6	346	26	23	28	21	1.99
33691033--33691088	15	3.7	15	72	6	51	25	3	7	64	1.35
33706418--33706457	21	1.9	21	85	10	55	10	20	2	67	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33712932--33712961	15	2.0	15	93	0	51	43	6	3	46	1.46
33713783--33713810	13	2.2	13	100	0	56	28	0	0	71	0.86
33715956--33716043	45	2.0	45	93	0	149	36	0	12	51	1.40
33715966--33716068	25	4.3	25	71	12	99	38	0	12	48	1.41
33715966--33716096	70	1.9	70	98	0	253	37	0	12	49	1.41
33715973--33716112	70	2.0	70	91	2	212	38	1	13	46	1.52
33716780--33716804	11	2.3	11	100	0	50	0	48	24	28	1.52
33719238--33719612	124	3.0	124	93	0	624	33	23	15	28	1.95
33720426--33720454	14	2.0	15	93	6	51	55	0	3	41	1.17
33725286--33725375	26	3.1	29	81	15	105	51	2	2	44	1.26
33726651--33726711	29	2.1	28	87	3	86	45	14	13	26	1.81
33738917--33738988	37	1.9	37	97	0	135	27	11	22	38	1.88
33742948--33743012	25	2.6	26	85	4	73	38	3	0	58	1.14
33743045--33743095	25	2.1	24	82	10	59	45	1	1	50	1.24
33743205--33743243	19	2.0	20	90	5	62	41	7	5	46	1.55
33745072--33745175	51	2.0	51	100	0	208	41	13	11	33	1.80
33747177--33747223	20	2.5	20	82	6	53	59	0	4	36	1.17
33747604--33747705	43	2.4	43	85	3	143	44	10	7	37	1.69
33751767--33751891	46	2.7	45	77	4	133	29	12	25	32	1.93
33755430--33755623	50	3.9	48	78	6	158	21	27	22	28	1.99
33757751--33757881	43	2.9	46	78	6	151	48	11	6	33	1.64
33763111--33763138	9	3.1	9	100	0	56	53	0	10	35	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33767903--33767992	38	2.4	38	94	1	155	30	18	12	38	1.88
33771192--33771418	42	5.4	42	76	10	167	22	16	25	35	1.94
33771192--33771418	43	5.4	43	78	8	209	22	16	25	35	1.94
33771189--33771426	85	2.8	84	89	0	341	23	17	25	34	1.96
33785777--33785871	49	1.9	49	97	0	181	35	9	13	41	1.77
33788787--33788970	79	2.3	81	83	8	227	25	27	22	24	2.00
33788768--33788970	39	5.1	40	81	9	229	24	27	22	25	2.00
33794455--33794631	38	4.6	40	80	12	183	25	22	28	23	1.99
33794489--33794664	77	2.3	75	82	6	201	27	21	27	23	1.99
33802384--33802567	79	2.3	81	83	8	227	24	22	27	25	2.00
33802384--33802567	40	4.7	40	84	7	225	24	22	27	25	2.00
33802437--33802600	79	2.1	78	83	7	199	26	21	26	25	1.99
33802391--33802600	39	5.3	39	81	9	196	26	21	26	25	1.99
33813179--33813303	62	2.0	63	88	1	189	34	15	21	28	1.94
33822242--33822389	25	5.9	25	75	13	144	32	22	21	22	1.98
33822241--33822389	50	3.0	50	89	0	235	32	22	22	22	1.98
33827794--33827941	43	3.5	43	76	3	156	28	25	17	28	1.98
33831400--33831545	20	7.3	20	67	9	82	34	17	30	17	1.93
33831399--33831559	40	4.0	40	85	0	205	33	17	29	19	1.95
33832357--33832589	45	5.2	45	93	0	385	37	15	20	26	1.92
33838765--33838997	45	5.2	45	94	0	394	37	15	21	26	1.92
33856463--33856548	25	3.5	25	81	9	104	33	18	23	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33862697--33862754	28	2.1	28	90	0	89	29	20	24	25	1.99
33862869--33862939	26	2.7	26	88	0	97	40	22	21	15	1.90
33862890--33862967	26	3.0	27	86	3	79	37	20	23	19	1.95
33863121--33863340	27	8.2	26	84	7	219	18	16	18	46	1.84
33863136--33863340	54	3.8	54	84	2	243	17	16	19	47	1.83
33863121--33863340	81	2.7	81	84	2	273	18	16	18	46	1.84
33877014--33877046	15	2.3	15	89	5	50	39	27	0	33	1.57
33879928--33879969	21	2.0	21	85	0	57	33	0	23	42	1.55
33890378--33890428	26	2.0	26	96	0	93	9	21	37	31	1.86
33893040--33893084	24	1.9	24	86	4	65	22	2	48	26	1.62
33894190--33894249	20	3.0	20	75	4	59	33	13	31	21	1.92
33894199--33894375	40	4.6	40	81	8	222	33	16	31	18	1.93
33894276--33894375	20	5.0	20	66	13	71	33	20	32	15	1.93
33894199--33894375	74	2.3	76	86	5	232	33	16	31	18	1.93
33904804--33904842	18	2.2	17	86	13	53	33	0	20	46	1.51
33918354--33918391	8	4.9	8	87	6	51	81	5	0	13	0.85
33918354--33918393	15	2.6	15	88	4	53	82	5	0	12	0.82
33923746--33923777	15	2.1	15	94	0	55	31	53	0	15	1.43
33925567--33925705	45	3.1	43	79	8	143	21	15	26	36	1.93
33933451--33933601	70	2.1	72	91	2	243	30	29	16	23	1.96
33933451--33933638	70	2.6	70	86	7	225	30	31	17	20	1.95
33933521--33933743	104	2.1	104	93	1	376	31	31	18	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33940540--33940690	71	2.1	72	91	2	243	30	29	16	23	1.96
33940610--33940832	104	2.2	103	92	2	367	31	31	18	17	1.95
33942071--33942268	45	4.4	44	77	6	166	24	14	25	35	1.94
33947026--33947063	6	6.3	6	96	0	67	50	13	0	36	1.42
33951283--33951436	50	3.0	50	92	3	254	46	14	20	18	1.83
33971615--33971681	24	2.8	24	77	4	73	47	19	7	25	1.75
33971682--33971872	27	7.1	26	78	8	134	42	19	15	22	1.89
33971689--33971872	54	3.4	53	78	4	206	43	19	14	22	1.87
33971687--33971872	81	2.3	82	81	4	207	43	18	15	22	1.87
33977296--33977346	22	2.3	22	83	6	59	47	9	13	29	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211