genome.fa.s14.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  126  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36585379--36585499	35	3.5	35	87	2	172	42	28	9	18	1.82
36588481--36588669	51	3.7	50	79	6	211	31	27	16	24	1.97
36588483--36588667	101	1.8	101	88	3	282	31	26	17	24	1.97
36588827--36588858	16	2.0	16	93	0	55	37	15	6	40	1.73
36591161--36591205	17	2.8	16	80	12	56	57	0	2	40	1.11
36594303--36594347	13	3.5	13	78	0	54	46	11	11	31	1.74
36594308--36594369	26	2.4	26	81	5	63	48	16	9	25	1.76
36594572--36594620	19	2.5	20	83	12	66	42	4	0	53	1.20
36594670--36594745	38	2.1	36	82	5	89	50	1	0	48	1.09
36597426--36597472	3	16.0	3	95	4	87	31	0	0	68	0.90
36597771--36597869	47	2.2	46	87	10	145	29	22	7	41	1.80
36601581--36601620	20	2.0	20	100	0	80	30	25	15	30	1.95
36609603--36609997	100	4.0	100	93	0	648	30	20	23	25	1.98
36609615--36609989	50	7.5	50	71	4	281	30	20	24	25	1.98
36609603--36610007	201	2.0	199	90	0	639	30	20	22	25	1.98
36611137--36611175	5	7.8	5	97	0	69	15	2	0	82	0.79
36616299--36616349	25	2.0	26	96	3	95	43	0	0	56	0.99
36616978--36617002	8	3.1	8	100	0	50	24	0	0	76	0.80
36624482--36624659	27	6.6	27	83	3	196	26	14	29	29	1.95
36624482--36624659	54	3.3	55	84	4	236	26	14	29	29	1.95
36627771--36627817	24	1.9	25	83	12	62	53	19	8	19	1.70
36633199--36633229	13	2.4	13	94	0	53	25	3	9	61	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36633325--36633616	50	5.8	50	89	0	397	25	21	32	21	1.98
36634210--36634318	53	2.1	53	100	0	218	50	9	14	25	1.72
36673864--36673897	16	2.2	16	89	5	52	8	41	0	50	1.34
36675170--36675214	22	2.0	22	87	8	65	28	0	20	51	1.48
36682031--36682057	14	1.9	14	100	0	54	66	0	18	14	1.25
36692405--36692438	16	2.2	16	94	5	61	52	14	5	26	1.64
36707361--36707404	11	3.6	11	80	19	52	45	18	6	29	1.75
36715373--36715420	20	2.3	21	82	10	55	31	22	31	14	1.94
36715381--36715420	21	2.0	20	85	5	53	30	20	32	17	1.95
36730946--36731123	27	6.6	27	83	3	205	26	15	28	29	1.96
36730947--36731102	82	1.9	81	88	3	233	26	15	28	29	1.96
36730943--36731123	82	2.2	81	83	2	229	27	15	27	29	1.96
36738892--36738929	17	2.2	18	86	13	53	18	26	0	55	1.43
36744323--36744437	56	2.1	56	96	0	212	29	4	16	49	1.65
36747504--36747544	21	2.0	21	85	0	55	31	4	0	63	1.15
36747767--36747798	16	2.0	16	93	0	55	25	15	0	59	1.36
36748022--36748216	51	3.8	51	75	8	209	31	26	16	26	1.96
36754997--36755136	47	3.0	47	98	0	271	32	8	28	30	1.87
36755100--36755167	31	2.2	31	97	0	127	30	11	30	26	1.92
36755053--36755214	78	2.1	78	97	0	306	32	9	29	28	1.89
36755131--36755515	47	8.2	47	93	0	610	32	9	30	28	1.88
36755006--36755401	125	3.0	125	86	10	603	32	9	29	29	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36755130--36755515	187	2.1	188	90	0	612	32	9	30	28	1.88
36755634--36755712	37	2.1	37	88	4	115	25	18	30	25	1.98
36761379--36761417	19	2.1	19	90	0	60	51	10	7	30	1.64
36761369--36761494	54	2.3	54	90	0	198	45	14	7	32	1.74
36761433--36761469	19	1.9	19	88	0	56	54	10	5	29	1.57
36763506--36763562	19	3.1	19	94	5	98	50	12	10	26	1.72
36768201--36768261	25	2.4	25	81	10	72	39	3	0	57	1.15
36779470--36779647	27	6.6	27	82	3	196	27	15	27	29	1.96
36779467--36779647	82	2.2	81	82	4	222	27	15	27	29	1.96
36782158--36782211	27	2.0	27	81	0	63	37	24	16	22	1.94
36782006--36782325	168	1.9	168	95	0	577	34	25	11	28	1.91
36784580--36784641	10	5.9	10	74	10	52	33	32	3	30	1.74
36784580--36784642	21	3.0	21	88	2	90	33	33	3	30	1.74
36796538--36796593	26	2.2	26	100	0	112	30	7	19	42	1.78
36797539--36797578	14	2.9	13	85	10	53	20	0	2	77	0.88
36804126--36804388	40	6.6	40	87	3	316	26	28	20	24	1.99
36812063--36812271	79	2.6	79	87	2	303	26	28	20	24	1.99
36812063--36812324	40	6.6	40	86	3	307	26	28	20	24	1.99
36819658--36819920	40	6.6	40	87	3	316	26	28	20	24	1.99
36821341--36821453	58	1.9	58	96	3	210	25	30	19	24	1.98
36822620--36822649	15	2.0	15	100	0	60	46	6	6	40	1.56
36825669--36825722	25	2.2	25	83	12	67	57	0	1	40	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36826355--36826416	30	2.1	30	84	6	81	50	9	6	33	1.61
36834483--36834544	20	3.0	20	72	9	52	51	14	4	29	1.63
36834594--36834627	9	3.8	9	88	0	50	47	8	0	44	1.34
36841898--36842271	43	8.7	43	82	5	436	28	32	17	20	1.96
36841886--36842271	130	3.0	129	84	3	508	29	32	17	20	1.96
36843146--36843608	23	20.3	23	70	14	248	40	23	5	30	1.77
36843154--36843606	91	5.0	91	77	7	393	41	23	5	30	1.77
36843154--36843591	46	9.6	45	74	9	318	41	23	5	29	1.77
36843198--36843606	137	3.0	137	93	1	703	41	23	5	30	1.76
36847336--36847400	22	3.0	22	88	11	98	53	6	10	29	1.59
36848475--36848670	41	4.8	41	83	3	243	27	22	27	22	1.99
36853673--36853716	14	3.1	15	77	12	56	79	0	18	2	0.83
36855914--36856565	88	7.4	88	92	0	1065	29	22	23	24	1.99
36856565--36856903	89	3.8	88	84	1	399	29	26	22	20	1.99
36856659--36856798	45	3.1	44	74	13	151	29	26	24	20	1.99
36856624--36856854	45	5.2	43	71	16	134	28	28	23	19	1.98
36856591--36856824	44	5.3	44	71	16	151	26	29	22	21	1.99
36857224--36857536	44	7.2	44	69	12	139	33	19	21	26	1.97
36857168--36858196	129	8.0	129	87	0	1443	32	21	20	26	1.97
36858533--36858584	24	2.1	26	85	7	72	76	9	1	11	1.09
36866845--36866896	23	2.2	25	83	13	65	50	3	1	44	1.31
36869798--36869822	13	1.9	13	100	0	50	36	8	0	56	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36870494--36870636	40	3.5	40	83	10	173	61	1	2	34	1.19
36870570--36870604	18	1.9	18	100	0	70	62	2	0	34	1.10
36870543--36870606	9	6.4	10	77	15	53	67	1	1	29	1.09
36872032--36872131	8	11.2	8	70	16	56	49	2	1	48	1.19
36871987--36872048	20	3.1	19	73	13	61	53	0	3	43	1.17
36872033--36872171	9	14.9	9	69	16	52	46	2	0	50	1.21
36871991--36872130	9	14.9	9	73	15	70	50	1	2	45	1.22
36872115--36872175	20	3.0	20	69	4	59	44	3	0	52	1.17
36874422--36874464	18	2.5	17	81	7	52	60	2	0	37	1.10
36874572--36874634	20	3.3	20	62	20	53	33	23	19	23	1.97
36875294--36875457	87	1.9	84	85	7	224	39	9	12	39	1.75
36875396--36875519	59	2.1	59	100	0	248	41	11	10	36	1.75
36879195--36879372	27	6.6	27	83	3	205	26	15	28	29	1.96
36879196--36879351	82	1.9	81	88	3	233	26	15	28	29	1.96
36879192--36879372	82	2.2	81	83	2	229	27	15	27	29	1.96
36887027--36887204	27	6.6	27	83	3	205	26	15	28	29	1.96
36887028--36887183	82	1.9	81	88	3	233	26	15	28	29	1.96
36887024--36887204	82	2.2	81	83	2	229	27	15	27	29	1.96
36890072--36890120	22	2.2	22	77	0	53	59	0	18	22	1.38
36890472--36890522	20	2.5	20	100	0	102	52	0	9	37	1.34
36890668--36890717	5	9.6	5	82	8	64	42	0	18	40	1.50
36890668--36890706	11	3.6	11	96	3	71	41	0	20	38	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36890668--36890717	16	3.2	15	83	10	64	42	0	18	40	1.50
36891167--36891233	26	2.5	26	76	7	73	23	20	17	37	1.94
36894174--36894320	49	3.0	50	80	1	170	27	21	27	23	1.99
36894565--36894603	20	2.0	20	90	10	62	58	7	17	15	1.59
36900596--36900732	38	3.6	37	80	10	136	29	21	24	24	1.99
36900607--36900771	39	4.3	39	79	12	175	27	21	24	26	1.99
36908355--36908539	39	4.7	39	86	7	175	25	22	27	24	2.00
36908355--36908576	40	5.7	40	86	7	262	25	22	27	24	2.00
36927420--36927561	63	2.3	59	81	4	158	47	14	12	25	1.80
36935976--36936097	45	2.7	45	83	0	154	40	15	18	25	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211