genome.fa.s14.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  127  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36942962--36943149	51	3.7	51	82	2	209	29	28	17	25	1.97
36953623--36953807	79	2.3	81	83	7	227	24	22	27	24	2.00
36953624--36953807	40	4.6	40	82	9	207	25	22	27	24	2.00
36953676--36953840	79	2.1	79	83	6	201	26	21	27	24	1.99
36961565--36961749	79	2.3	81	83	7	227	24	22	27	24	2.00
36961566--36961749	40	4.6	40	82	9	207	25	22	27	24	2.00
36961618--36961782	79	2.1	79	83	6	201	26	21	27	24	1.99
36969931--36970108	27	6.6	27	84	3	205	29	28	15	26	1.96
36969952--36970107	82	1.9	81	88	3	233	29	28	15	26	1.96
36974674--36974953	139	2.0	139	95	0	506	31	14	22	31	1.94
36976235--36976355	50	2.4	50	79	5	129	20	28	23	28	1.99
36986329--36986360	12	2.7	12	95	0	55	0	3	6	90	0.53
36995794--36995842	25	1.9	25	83	4	62	34	10	28	26	1.89
36995820--36995884	33	2.0	32	90	3	103	40	16	24	18	1.91
37000681--37000710	6	5.2	6	92	8	53	86	0	13	0	0.57
37000681--37000710	11	2.6	12	89	10	53	86	0	13	0	0.57
37001328--37001402	39	1.9	39	81	5	89	28	9	24	38	1.86
37003757--37003790	17	2.0	17	100	0	68	23	11	23	41	1.87
37008325--37008445	41	3.0	40	78	11	113	28	19	25	27	1.98
37012749--37012823	29	2.6	29	87	4	98	40	13	16	30	1.86
37015388--37015420	14	2.4	14	85	5	50	42	27	21	9	1.83
37019045--37019101	30	1.9	30	92	0	96	35	7	12	45	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37023179--37023234	29	1.9	29	88	0	85	35	1	10	51	1.47
37024269--37024310	5	8.4	5	97	0	75	42	16	0	40	1.48
37024663--37024979	126	2.5	125	93	2	530	31	18	21	28	1.97
37026195--37026235	11	3.6	12	83	9	50	53	2	21	21	1.57
37026182--37026285	51	2.0	51	85	10	140	50	1	23	25	1.60
37026515--37026577	29	2.2	28	75	8	74	41	15	20	22	1.90
37026714--37026752	10	3.8	10	86	3	51	38	0	0	61	0.96
37027715--37027751	19	1.9	19	88	0	56	37	2	0	59	1.12
37027489--37028185	231	2.9	229	81	9	762	39	9	6	45	1.61
37027838--37027875	17	2.2	18	90	4	60	50	0	7	42	1.31
37027498--37028368	248	3.6	240	79	10	822	38	9	6	45	1.63
37031930--37032003	37	2.0	37	97	0	139	24	25	4	45	1.70
37038705--37038886	29	6.3	29	73	9	149	37	13	25	22	1.91
37038743--37038875	59	2.3	59	85	2	178	39	9	27	22	1.85
37038674--37038886	84	2.5	84	85	3	264	38	13	25	23	1.91
37038705--37038885	59	3.1	58	77	7	172	38	13	25	22	1.91
37047626--37047703	39	2.0	39	82	9	97	50	12	10	26	1.73
37052059--37052103	21	2.1	21	84	8	56	51	17	13	17	1.77
37060924--37060993	6	11.7	6	71	0	59	71	2	18	7	1.22
37063378--37063417	16	2.6	15	80	4	53	25	5	5	65	1.34
37065012--37065189	27	6.6	27	83	3	205	26	15	28	29	1.96
37065013--37065168	82	1.9	81	88	3	233	26	15	28	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37065009--37065189	82	2.2	81	83	2	229	27	15	27	29	1.96
37072215--37072392	27	6.6	27	83	3	205	26	15	28	29	1.96
37072216--37072371	82	1.9	81	88	3	233	26	15	28	29	1.96
37072212--37072392	82	2.2	81	83	2	229	27	15	27	29	1.96
37079441--37079495	28	2.0	28	88	0	83	29	21	25	23	1.99
37079794--37079963	83	2.1	81	88	4	252	18	16	21	43	1.88
37079793--37079963	27	6.3	27	84	2	207	18	16	21	43	1.88
37087414--37087493	42	2.0	40	85	5	106	27	18	2	51	1.59
37087787--37087830	21	2.1	21	83	8	54	47	15	9	27	1.76
37094774--37094990	52	4.2	52	83	7	251	53	14	7	23	1.67
37094773--37094990	104	2.1	104	84	3	278	53	14	7	23	1.67
37095335--37095409	38	2.0	38	100	0	150	41	26	8	24	1.82
37095506--37095567	33	1.9	32	87	9	90	4	25	3	66	1.27
37095553--37095584	17	1.9	17	93	6	57	3	18	0	78	0.89
37095531--37095608	24	3.4	23	77	8	79	5	21	2	70	1.19
37095583--37095626	21	2.3	20	82	17	58	4	25	6	63	1.38
37106328--37106496	78	2.2	78	90	0	257	34	13	19	31	1.91
37112462--37113094	27	23.5	27	78	8	522	44	20	16	19	1.87
37112530--37113092	54	10.5	53	84	3	651	43	20	16	19	1.87
37112520--37113092	81	7.1	81	83	3	672	44	20	16	18	1.87
37113340--37113398	26	2.3	26	81	0	73	23	18	22	35	1.96
37113508--37113681	28	6.2	28	91	2	287	21	24	24	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37119310--37119411	41	2.5	40	85	6	132	26	25	19	28	1.99
37125970--37126941	100	9.8	100	89	2	1404	23	18	23	33	1.97
37125970--37126941	199	4.9	199	90	1	1479	23	18	23	33	1.97
37128527--37128564	7	5.4	7	81	12	51	13	15	0	71	1.16
37129469--37129539	34	2.1	34	82	10	83	9	8	8	73	1.26
37138620--37138647	14	2.0	14	100	0	56	57	0	7	35	1.26
37141573--37141613	21	2.0	21	95	0	73	43	29	19	7	1.78
37148029--37148217	76	2.5	77	81	1	218	37	4	16	41	1.68
37148573--37148795	31	6.9	31	69	19	120	27	9	18	44	1.80
37148591--37148854	33	8.1	33	72	14	203	29	7	18	43	1.79
37148626--37148799	31	5.5	31	72	15	122	27	9	18	44	1.81
37148545--37148853	64	4.8	64	87	4	388	28	7	18	44	1.77
37150426--37150473	24	2.0	25	83	4	62	18	12	0	68	1.20
37150843--37150963	50	2.4	51	84	6	174	38	14	15	31	1.87
37152766--37152804	12	3.2	12	85	0	51	17	20	5	56	1.60
37153006--37153200	50	4.0	48	77	2	165	24	29	20	26	1.99
37153013--37153200	100	1.9	99	83	1	241	23	29	20	27	1.99
37155710--37155989	27	10.4	27	83	5	309	22	14	18	44	1.86
37155715--37155989	107	2.6	107	88	1	388	22	14	18	44	1.86
37156906--37156945	18	2.2	19	86	8	57	70	5	25	0	1.08
37170220--37170954	367	2.0	368	93	0	1267	24	21	20	33	1.97
37179258--37179293	12	3.0	12	100	0	72	75	8	0	16	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37186948--37186982	16	2.2	16	90	5	54	8	17	2	71	1.23
37193116--37193217	40	2.6	39	84	9	129	24	20	27	27	1.99
37199812--37200208	47	8.6	47	86	9	566	30	29	7	33	1.84
37203560--37203955	47	8.6	47	87	7	571	33	7	28	30	1.85
37203560--37203944	138	2.8	140	89	6	572	32	7	28	30	1.85
37208543--37208726	79	2.3	81	84	6	234	25	27	22	25	2.00
37208524--37208726	39	5.1	40	80	9	220	24	27	22	25	2.00
37212718--37212832	54	2.1	54	90	3	178	43	15	9	31	1.79
37214417--37214444	13	2.2	13	100	0	56	85	0	14	0	0.59
37217977--37218003	14	1.9	14	100	0	54	14	25	22	37	1.93
37223306--37223330	13	1.9	13	100	0	50	24	16	12	48	1.79
37227716--37227803	45	2.0	45	95	0	158	32	23	18	25	1.97
37233671--37233699	13	2.1	14	93	6	51	10	6	13	68	1.37
37238554--37238655	52	1.9	53	84	2	134	33	18	11	36	1.87
37240029--37240138	39	2.8	38	79	4	121	45	11	9	33	1.72
37245527--37245728	39	5.1	40	82	8	236	24	27	22	24	2.00
37252563--37252745	40	4.7	40	81	8	207	25	27	22	25	2.00
37252563--37252745	79	2.3	81	82	7	207	25	27	22	25	2.00
37255381--37255442	27	2.3	27	97	0	115	41	16	4	37	1.69
37280901--37280929	13	2.2	13	100	0	58	55	27	6	10	1.59
37285424--37285451	14	2.0	14	100	0	56	35	7	0	57	1.26
37297528--37297881	47	7.6	47	92	0	559	28	29	8	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37301995--37302266	40	6.8	40	92	0	418	26	29	20	23	1.99
37303677--37303924	47	5.3	47	93	0	406	28	29	8	32	1.87
37305277--37305481	27	7.6	27	86	3	259	30	27	15	26	1.96
37312616--37312732	33	3.6	32	86	5	119	8	32	5	53	1.53
37312655--37312732	17	4.8	15	73	25	61	10	29	2	57	1.45
37312648--37312737	16	5.5	16	74	21	71	10	31	2	56	1.44
37312647--37312733	33	2.6	33	92	0	138	10	31	3	55	1.50
37318738--37318770	12	2.6	13	80	9	50	33	6	0	60	1.21
37328677--37328779	23	4.4	22	68	20	66	8	21	2	66	1.32
37328745--37328794	14	3.5	14	78	5	55	2	22	2	74	1.03

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211