genome.fa.s14.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  130  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38050405--38050760	78	4.6	78	94	0	615	38	4	14	43	1.64
38051460--38051699	41	5.8	41	86	4	297	30	20	26	23	1.98
38051868--38051950	34	2.4	36	78	12	91	34	9	18	37	1.83
38051933--38052014	40	2.0	40	97	0	155	37	4	13	43	1.65
38053948--38054001	25	2.2	25	93	0	90	16	48	12	22	1.80
38053952--38054007	25	2.4	23	85	8	69	16	48	14	21	1.81
38060667--38060709	17	2.5	18	81	11	54	51	0	0	48	1.00
38060673--38060955	67	4.4	60	69	19	178	43	4	3	48	1.40
38060673--38061003	130	2.6	127	88	5	481	44	4	3	47	1.43
38062483--38062557	36	2.1	36	97	0	141	25	20	26	28	1.99
38064146--38064189	18	2.4	18	78	14	54	13	6	31	47	1.69
38067062--38067105	21	2.0	22	86	4	63	11	9	25	54	1.65
38068751--38068806	22	2.5	22	91	0	85	26	33	16	23	1.95
38073909--38074070	80	2.0	80	96	0	297	30	16	17	35	1.92
38074657--38074755	45	2.2	45	100	0	198	32	27	11	29	1.91
38077671--38077697	14	1.9	14	100	0	54	37	14	0	48	1.45
38082354--38082403	25	2.0	26	88	4	75	12	10	10	68	1.41
38090586--38090716	40	3.3	40	80	5	167	27	27	21	23	1.99
38093114--38093155	22	2.0	22	86	9	61	59	4	2	33	1.31
38093090--38093155	22	3.1	20	78	8	60	57	6	1	34	1.33
38094770--38096373	132	12.2	132	93	0	2670	25	24	19	30	1.98
38108570--38108634	24	2.7	23	75	17	62	64	3	1	30	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38111166--38111211	20	2.3	19	82	10	56	45	2	4	47	1.34
38111236--38111272	18	2.1	18	90	10	58	62	2	0	35	1.10
38112215--38112261	17	2.8	18	81	12	55	40	0	4	55	1.19
38116008--38116054	3	15.7	3	100	0	94	0	31	0	68	0.90
38131583--38131671	36	2.5	36	94	0	151	37	38	6	17	1.77
38132111--38132173	29	2.2	29	91	0	99	19	30	26	23	1.98
38132939--38132967	15	1.9	15	100	0	58	44	13	0	41	1.44
38136039--38136065	11	2.5	11	100	0	54	44	18	11	25	1.83
38136757--38136801	20	2.4	18	82	13	56	42	11	13	33	1.79
38137678--38138465	37	21.5	37	78	6	603	37	14	21	26	1.92
38137702--38138465	75	10.4	72	75	9	504	37	14	21	26	1.91
38137679--38138465	112	7.2	108	78	6	624	37	14	21	26	1.92
38138647--38138799	75	2.0	75	91	0	243	41	19	11	26	1.86
38142937--38142999	8	7.4	8	73	19	56	61	6	1	30	1.30
38143041--38143084	21	2.0	22	86	4	63	52	0	4	43	1.22
38146923--38147035	44	2.6	44	94	0	190	23	29	12	34	1.92
38148663--38149031	43	8.6	43	75	11	294	32	23	16	27	1.96
38148658--38149031	86	4.4	86	75	10	345	32	23	16	27	1.96
38148663--38149047	129	3.0	129	93	1	639	32	23	16	27	1.96
38152629--38152969	43	8.0	42	78	6	326	32	24	16	27	1.96
38152603--38152974	129	2.9	129	91	0	602	32	23	16	27	1.96
38156338--38156378	22	1.9	21	85	5	55	56	7	2	34	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38156415--38156494	39	2.1	39	97	0	151	36	8	5	50	1.55
38156565--38156589	10	2.5	10	100	0	50	64	16	8	12	1.49
38157360--38158288	141	6.9	127	78	10	674	32	22	18	26	1.97
38157739--38158315	141	4.1	140	87	1	816	31	23	18	26	1.97
38161006--38161102	49	2.0	49	91	0	158	26	23	5	44	1.74
38162356--38162441	43	2.0	43	90	4	138	24	23	2	50	1.61
38165799--38165840	20	2.1	20	86	0	57	28	7	16	47	1.73
38175912--38175940	3	9.7	3	100	0	58	31	0	0	68	0.89
38180291--38180350	17	3.5	17	81	0	75	48	5	3	43	1.41
38185976--38186103	68	1.9	69	86	4	188	31	12	20	35	1.90
38189565--38189811	50	4.8	50	82	7	250	28	21	27	22	1.99
38196906--38196959	21	2.6	21	74	11	56	48	14	33	3	1.62
38204150--38204184	18	1.9	18	88	0	52	42	2	48	5	1.41
38205574--38205626	21	2.5	21	90	3	79	33	33	1	30	1.69
38216061--38216151	36	2.6	35	81	5	103	41	26	14	17	1.88
38216213--38216278	18	3.7	18	75	0	60	48	25	6	19	1.72
38218644--38218690	18	2.4	20	86	10	62	29	0	4	65	1.11
38219852--38219913	22	2.7	22	78	9	70	64	8	4	22	1.40
38223101--38223134	3	11.3	3	100	0	68	67	0	0	32	0.91
38237878--38237911	17	1.9	18	88	5	52	61	0	38	0	0.96
38238019--38238051	17	1.9	17	100	0	66	24	12	6	57	1.57
38246711--38246766	30	1.9	30	86	13	82	16	14	8	60	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38251595--38251953	47	7.6	47	92	2	549	32	8	29	29	1.87
38263231--38263455	40	5.7	40	82	6	233	25	28	21	25	1.99
38263387--38263464	40	1.9	41	82	10	97	26	28	20	24	1.99
38271635--38271767	50	2.6	51	84	3	171	24	24	30	20	1.98
38279009--38279141	50	2.7	50	81	6	153	27	22	28	21	1.99
38279405--38279443	20	2.0	20	90	10	62	56	5	23	15	1.59
38285613--38285701	44	2.0	44	95	4	162	15	23	4	56	1.58
38285793--38285850	22	2.7	21	76	10	53	41	15	5	37	1.70
38286400--38287161	132	5.8	132	92	0	1238	27	23	19	29	1.98
38286400--38287161	395	1.9	396	93	0	1303	27	23	19	29	1.98
38287226--38287370	44	3.3	44	71	5	148	17	22	33	26	1.96
38287253--38287382	43	2.9	46	68	6	131	18	23	28	30	1.98
38287218--38287352	43	3.1	43	69	6	135	17	25	30	27	1.97
38287204--38287382	89	2.0	89	95	0	322	18	24	27	28	1.98
38288601--38288629	14	2.0	15	93	6	51	0	10	6	82	0.83
38291248--38291293	24	1.9	24	86	0	65	10	26	17	45	1.81
38293995--38294087	49	1.9	47	95	4	168	22	22	4	50	1.66
38294205--38294338	19	6.8	19	87	3	169	39	14	7	38	1.74
38294228--38294331	38	2.7	38	95	0	190	39	12	7	40	1.72
38297893--38298276	41	9.4	41	83	4	350	35	14	26	23	1.93
38297886--38298244	82	4.4	82	82	4	386	35	15	26	22	1.93
38298056--38298119	21	3.1	21	65	4	58	29	12	32	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38297893--38298261	123	3.0	122	82	3	404	35	14	26	23	1.93
38305303--38305334	16	2.0	16	93	0	55	25	15	0	59	1.36
38305562--38305748	51	3.7	49	78	11	200	31	26	17	24	1.97
38305560--38305744	101	1.8	102	89	5	295	31	26	17	24	1.97
38308352--38308393	21	2.0	21	95	0	75	26	23	26	23	2.00
38309504--38309531	12	2.3	12	100	0	56	39	21	0	39	1.54
38317722--38317746	9	2.8	9	100	0	50	24	12	0	64	1.27
38323742--38323840	50	2.0	50	83	0	126	34	14	23	28	1.93
38323950--38324021	27	2.6	27	82	8	83	30	15	26	27	1.96
38324174--38324234	27	2.3	27	85	5	79	45	9	16	27	1.79
38324190--38324276	27	3.2	27	86	0	111	42	13	18	25	1.87
38326246--38326566	37	8.7	37	70	9	172	29	23	23	23	1.99
38326395--38326583	74	2.6	74	77	3	209	29	22	24	23	1.99
38326271--38326521	111	2.3	111	85	3	319	28	22	25	23	1.99
38328052--38328091	21	1.9	21	89	0	62	40	0	17	42	1.49
38328051--38328102	21	2.5	21	81	6	61	38	0	15	46	1.46
38328554--38328610	26	2.2	26	90	3	89	14	24	24	36	1.92
38328634--38328720	25	3.5	24	71	6	66	20	22	20	35	1.96
38339957--38339993	17	2.2	17	95	0	65	24	5	32	37	1.78
38344630--38344689	19	3.1	20	81	11	63	58	1	3	36	1.25
38350371--38350402	13	2.5	13	95	5	57	84	0	0	15	0.63
38350371--38350402	6	5.2	6	92	7	55	84	0	0	15	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38353283--38353344	32	1.9	32	96	0	115	51	6	9	32	1.60
38358680--38358812	45	3.0	44	79	2	140	41	16	19	22	1.90
38360937--38361132	68	2.9	68	78	5	173	35	20	21	22	1.96
38365225--38365262	19	2.1	18	90	5	58	26	5	2	65	1.27
38365219--38365280	25	2.5	24	80	10	63	30	4	3	61	1.33
38365227--38365274	19	2.5	19	83	6	53	29	6	2	62	1.31
38369242--38369511	105	2.6	105	92	2	436	30	30	20	19	1.97
38372169--38372258	6	14.7	6	82	6	83	67	11	5	15	1.38
38372145--38372271	49	2.6	48	82	10	152	71	10	6	11	1.30
38372266--38372297	7	4.6	7	100	0	64	71	0	28	0	0.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211