genome.fa.s14.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  151  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44794317--44794409	32	2.9	32	98	0	177	51	18	3	26	1.61
44794318--44794436	32	4.0	27	89	7	78	52	18	3	26	1.61
44794315--44794454	59	2.3	62	81	8	171	52	18	2	26	1.59
44794633--44794658	9	2.9	9	100	0	52	0	34	0	65	0.93
44805972--44806025	25	2.2	25	100	0	108	44	16	22	16	1.86
44809415--44809479	20	3.2	20	68	8	60	16	35	15	32	1.91
44809364--44809668	40	7.7	40	82	0	288	22	29	15	33	1.95
44809422--44809650	120	1.9	120	86	0	323	22	30	14	32	1.94
44812684--44812716	15	2.1	17	88	11	52	24	12	0	63	1.28
44813772--44813943	95	1.8	95	89	2	274	19	16	15	48	1.81
44817981--44818031	23	2.3	23	86	3	68	31	29	21	17	1.96
44823344--44823474	40	3.3	39	83	4	163	30	27	18	23	1.98
44823347--44823520	80	2.2	80	81	10	196	29	27	18	24	1.98
44828418--44828468	23	2.3	23	86	3	68	31	29	21	17	1.96
44834516--44834556	20	2.0	20	86	9	57	24	34	29	12	1.91
44839728--44840027	165	1.8	165	91	0	501	24	15	27	33	1.95
44840415--44840452	20	1.9	20	94	0	67	5	15	0	78	0.91
44840693--44840740	22	2.2	22	84	0	60	35	2	10	52	1.48
44843568--44843607	20	2.0	20	85	14	55	17	10	2	70	1.27
44843568--44843608	21	2.0	21	85	9	57	17	9	2	70	1.25
44856824--44857168	42	8.2	42	84	0	278	22	18	22	36	1.95
44856858--44857164	125	2.4	127	86	5	410	22	18	22	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44860996--44861024	15	2.0	15	93	6	51	62	17	0	20	1.33
44872050--44872103	3	18.0	3	78	0	54	59	5	0	35	1.21
44872191--44872249	26	2.4	24	73	18	57	72	1	6	18	1.15
44872335--44872373	15	2.5	15	88	12	53	76	0	2	20	0.90
44874032--44874110	39	2.0	39	97	0	149	31	18	17	31	1.95
44874240--44874350	41	2.6	41	84	4	123	27	24	20	27	1.99
44874114--44874353	96	2.6	91	77	8	222	29	21	17	31	1.96
44874128--44874351	44	5.0	44	73	10	166	28	21	16	32	1.96
44876246--44876494	50	4.8	50	85	4	284	20	29	24	26	1.99
44876245--44876494	100	2.4	104	88	6	357	20	29	24	26	1.99
44876589--44876620	13	2.5	13	94	0	55	56	12	0	31	1.37
44876832--44876889	30	1.9	30	89	0	89	31	24	3	41	1.71
44883836--44884084	50	4.8	50	85	4	284	20	29	24	26	1.99
44883835--44884084	100	2.4	104	88	6	357	20	29	24	26	1.99
44884179--44884210	13	2.5	13	94	0	55	56	12	0	31	1.37
44884422--44884478	30	1.9	29	85	3	78	31	24	1	42	1.65
44886834--44887353	47	11.1	47	94	0	844	32	9	30	28	1.88
44886944--44887065	23	5.2	23	61	24	58	32	6	31	28	1.83
44887472--44887550	37	2.1	37	90	0	122	26	18	29	25	1.98
44888908--44889133	51	4.7	51	67	13	163	29	19	17	34	1.94
44888907--44889134	95	2.4	96	89	0	350	28	19	17	34	1.94
44889037--44889216	44	4.1	43	78	6	139	28	17	17	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44896033--44896097	18	3.5	17	73	19	58	70	0	4	24	1.06
44896181--44896219	15	2.5	15	88	12	53	74	2	2	20	1.06
44905773--44905802	16	1.9	16	93	6	53	50	20	0	30	1.49
44918050--44918084	17	2.1	17	88	0	52	54	0	2	42	1.15
44922273--44922297	6	4.2	6	100	0	50	20	0	0	80	0.72
44923959--44923997	20	2.0	20	84	0	51	17	7	2	71	1.21
44924826--44924874	23	2.0	25	88	7	75	32	2	0	65	1.04
44927436--44927482	24	2.0	24	95	0	85	23	17	34	25	1.96
44935706--44935813	42	2.6	40	73	15	94	21	33	19	25	1.97
44938004--44938103	49	2.0	49	88	0	146	49	13	7	31	1.68
44940241--44940280	22	1.9	20	85	10	53	17	20	30	32	1.95
44941414--44941650	94	2.5	94	81	2	260	32	17	24	26	1.97
44947884--44947915	2	16.0	2	100	0	64	50	0	0	50	1.00
44955580--44955623	20	2.2	20	84	8	54	52	0	6	40	1.28
44957226--44957268	21	2.0	21	90	0	68	46	18	4	30	1.69
44960102--44960134	16	2.1	16	94	0	57	51	0	0	48	1.00
44960159--44960183	13	1.9	13	100	0	50	40	0	0	60	0.97
44961139--44961221	37	2.3	35	80	15	96	43	3	22	30	1.70
44961142--44961214	37	1.9	38	86	8	105	42	4	23	30	1.73
44964053--44964228	29	6.2	29	78	10	132	35	15	19	28	1.93
44964118--44964228	29	3.8	29	90	0	159	38	12	19	28	1.89
44969074--44969128	19	2.8	19	76	15	58	38	5	27	29	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44987036--44987083	18	2.7	17	81	15	53	70	2	2	25	1.09
44987036--44987082	19	2.6	19	83	12	55	72	2	2	23	1.06
44990342--44990374	9	3.8	9	88	4	50	78	0	0	21	0.75
44990324--44990377	22	2.5	21	82	14	65	79	0	1	18	0.82
44990326--44990374	13	3.3	15	86	11	57	79	0	2	18	0.83
44995768--44995828	23	2.5	24	86	5	79	45	16	9	27	1.79
45000231--45000282	15	3.4	16	79	12	56	46	0	1	51	1.12
45000231--45000260	16	1.9	15	93	6	51	43	0	0	56	0.99
45000141--45000400	122	2.1	120	95	2	466	42	1	5	49	1.37
45000175--45000360	66	3.1	59	67	22	150	43	1	6	48	1.38
45000357--45000398	15	2.7	16	82	14	52	45	0	2	52	1.13
45000348--45000389	15	2.9	15	82	10	52	47	0	0	52	1.00
45000526--45000630	44	2.5	40	76	15	113	31	29	4	34	1.78
45000524--45000633	45	2.6	44	81	8	131	31	29	5	33	1.80
45000612--45000649	16	2.4	16	90	0	58	34	34	0	31	1.58
45002701--45002738	18	2.1	18	90	0	58	50	2	0	47	1.15
45004372--45004398	13	2.1	13	100	0	54	29	7	22	40	1.81
45011575--45011771	98	2.0	98	95	0	358	36	24	10	28	1.88
45013926--45014425	218	2.3	217	90	1	777	28	22	20	29	1.98
45014075--45014413	45	7.7	45	69	13	143	27	23	20	29	1.99
45014214--45014326	44	2.6	44	75	10	113	30	16	21	30	1.95
45025728--45025924	98	2.0	98	95	0	358	37	23	10	29	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45029728--45029811	32	2.7	30	80	12	107	58	0	4	36	1.19
45029758--45029782	11	2.3	11	100	0	50	68	0	0	32	0.90
45029862--45029903	18	2.3	18	88	8	59	59	2	9	28	1.41
45034143--45034279	67	2.1	65	79	5	141	35	20	8	35	1.82
45035002--45035050	24	2.0	24	100	0	98	24	30	20	24	1.98
45036138--45036182	22	2.2	20	84	8	54	35	20	4	40	1.72
45037488--45037530	22	2.0	22	85	0	59	37	25	18	18	1.94
45037915--45037977	10	6.5	10	78	5	67	69	0	1	28	0.97
45037915--45037977	19	3.2	20	82	6	76	69	0	1	28	0.97
45037915--45037985	19	3.7	19	79	5	63	70	0	1	28	0.96
45038992--45039037	13	3.5	13	81	18	60	71	0	2	26	0.97
45038992--45039039	3	16.0	3	79	16	55	70	0	2	27	0.98
45040205--45040251	22	2.1	23	84	4	60	68	2	4	25	1.19
45040228--45040315	28	3.1	28	75	14	83	62	3	4	29	1.31
45040996--45041028	11	3.1	11	91	8	59	30	6	0	63	1.18
45046460--45046497	20	1.9	20	94	0	67	21	5	10	63	1.46
45050419--45050864	44	10.1	44	88	2	610	30	24	12	32	1.93
45050419--45050831	177	2.3	177	90	2	634	30	25	12	32	1.92
45052151--45052196	20	2.2	21	84	7	58	15	10	2	71	1.23
45053100--45053138	19	2.1	19	90	0	60	66	7	12	12	1.43
45057274--45057311	12	3.2	12	82	10	51	55	0	10	34	1.34
45057265--45057311	24	2.0	24	87	8	69	57	0	10	31	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45062605--45062637	14	2.2	16	89	10	52	66	3	0	30	1.06
45069510--45069562	28	1.9	28	84	3	72	45	7	0	47	1.31
45073613--45073643	3	10.3	3	100	0	62	0	0	32	67	0.91
45074511--45074872	188	1.9	187	98	0	706	30	17	14	37	1.90
45076772--45076808	17	2.1	18	90	5	58	29	24	0	45	1.53
45077526--45077615	9	10.1	9	84	11	123	80	8	0	11	0.92
45077526--45077615	25	3.4	27	88	10	132	80	8	0	11	0.92
45077627--45077665	16	2.5	15	88	8	60	82	0	17	0	0.68
45078468--45078500	9	3.9	9	84	15	52	75	0	12	12	1.04
45078468--45078500	16	2.1	16	100	0	66	75	0	12	12	1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211