genome.fa.s14.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  117  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32929759--32929818	27	2.2	27	93	0	102	25	3	23	48	1.66
32932195--32932257	31	2.0	31	87	6	92	49	6	19	25	1.71
32942236--32942270	16	2.1	17	89	5	54	37	17	8	37	1.80
32948505--32948656	59	2.6	58	79	8	164	21	25	15	37	1.93
32948505--32948630	29	4.3	29	80	2	135	20	26	15	36	1.93
32957257--32957325	5	13.8	5	100	0	138	40	0	0	59	0.97
32958463--32958534	21	3.4	21	94	0	117	1	45	18	34	1.58
32964037--32964487	9	51.2	9	73	14	320	33	1	19	45	1.60
32964030--32964293	41	6.6	40	74	18	196	31	1	21	45	1.59
32964489--32964561	12	5.5	14	68	20	50	36	0	12	50	1.40
32964614--32964651	15	2.4	17	86	8	53	60	0	2	36	1.11
32964606--32964656	17	2.9	17	85	2	57	54	0	5	39	1.24
32964661--32964750	23	3.8	23	78	10	101	41	1	17	40	1.57
32964741--32964768	12	2.3	12	100	0	56	42	0	7	50	1.30
32964767--32964854	23	4.0	22	84	12	110	52	2	1	44	1.21
32964765--32964853	47	2.0	43	87	12	126	52	2	1	43	1.20
32967374--32967415	14	2.9	14	89	3	66	38	38	0	23	1.55
32967377--32967415	7	5.6	7	81	0	51	41	35	0	23	1.55
32967683--32967737	25	2.2	25	90	0	83	54	16	1	27	1.52
32967700--32967750	25	2.0	25	84	0	66	58	15	0	25	1.37
32970363--32970403	19	2.3	19	79	8	50	51	17	4	26	1.65
32972792--32972837	19	2.4	19	100	0	92	36	13	0	50	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32976311--32976478	89	1.9	89	95	2	302	27	22	12	36	1.90
32977424--32977473	22	2.3	22	83	13	59	60	2	2	36	1.20
32979567--32979640	22	3.3	22	67	25	64	29	5	8	56	1.51
32979559--32979649	46	2.0	46	95	2	166	31	6	6	54	1.52
32979564--32979644	25	3.4	25	65	14	73	30	4	7	56	1.48
32983707--32983761	23	2.4	23	93	0	92	25	27	25	21	2.00
32983743--32983933	89	2.1	89	92	0	310	27	28	23	20	1.99
32984141--32984199	23	2.6	23	91	0	100	38	23	1	35	1.65
32986926--32987152	43	5.4	42	78	10	196	37	25	14	23	1.92
32986934--32987072	42	3.3	41	76	15	149	35	25	15	23	1.94
32986926--32987119	85	2.3	85	90	0	318	37	25	13	23	1.92
32986930--32987152	42	5.3	42	73	12	143	37	25	14	23	1.92
32986926--32987153	85	2.7	85	85	3	316	37	25	14	23	1.92
32987267--32987327	31	2.0	31	93	0	104	37	19	1	40	1.62
32989661--32989707	13	3.6	13	77	11	60	53	2	2	42	1.25
32990369--32990419	24	2.1	25	85	3	68	27	37	0	35	1.57
32993758--32993791	17	1.9	18	88	5	52	73	11	2	11	1.20
33001399--33001593	29	6.7	29	82	2	239	22	29	10	38	1.87
33001399--33001592	58	3.3	58	86	2	300	21	29	10	38	1.87
33001387--33001587	87	2.3	87	86	0	276	22	28	10	37	1.88
33009123--33009189	25	2.7	25	85	0	80	23	25	19	31	1.98
33032153--33032249	25	3.9	25	71	15	85	34	19	22	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33034395--33034427	11	2.8	12	90	9	50	18	0	3	78	0.87
33044028--33044210	91	2.0	91	96	2	341	31	6	20	41	1.77
33044655--33044716	32	1.9	32	93	6	108	19	3	16	61	1.48
33049158--33049391	27	8.7	26	78	14	203	41	18	16	23	1.90
33049158--33049391	54	4.4	54	82	4	242	41	18	16	23	1.90
33049158--33049405	81	3.1	80	87	5	306	41	18	16	24	1.89
33049158--33049410	134	1.9	135	89	2	393	41	18	16	24	1.90
33049606--33049680	26	2.9	26	83	0	96	14	21	22	41	1.89
33049808--33049881	30	2.5	30	86	0	112	22	24	18	33	1.97
33058864--33058911	8	6.1	8	77	22	57	37	2	0	60	1.09
33066703--33066775	16	4.1	16	73	21	56	27	13	12	46	1.79
33066724--33066772	23	2.1	23	92	0	80	28	14	12	44	1.81
33069813--33069890	32	2.5	32	87	6	106	20	19	32	28	1.97
33071442--33071483	20	2.0	21	82	13	52	28	11	9	50	1.70
33073214--33073358	50	2.9	49	84	5	168	24	23	20	31	1.98
33078628--33078673	19	2.4	19	89	7	67	45	0	4	50	1.21
33081958--33082142	79	2.3	82	83	7	220	25	27	22	24	2.00
33081958--33082142	40	4.7	40	82	6	216	25	27	22	24	2.00
33083269--33083443	56	3.1	56	98	0	334	22	22	9	45	1.81
33086470--33086619	51	2.9	51	94	0	273	40	4	26	28	1.74
33092187--33092235	25	2.0	25	88	11	75	48	2	2	46	1.25
33092924--33092948	3	8.3	3	100	0	50	32	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33095548--33095759	105	2.0	105	100	0	424	42	11	12	33	1.78
33099575--33099702	44	3.0	43	87	5	179	47	2	25	25	1.64
33114735--33114784	27	1.9	26	92	8	84	38	16	26	20	1.92
33122072--33122118	17	2.8	17	75	12	51	4	27	4	63	1.31
33122073--33122116	23	1.9	23	86	9	63	4	25	4	65	1.30
33135785--33135843	22	2.6	22	82	15	68	55	0	8	35	1.30
33138482--33138520	20	2.0	20	90	10	62	15	23	5	56	1.59
33138723--33138916	49	3.9	50	78	3	169	22	28	20	28	1.99
33140912--33140946	13	2.9	12	88	12	54	42	17	14	25	1.86
33141024--33141076	25	2.1	26	89	3	81	24	9	18	47	1.78
33141031--33141251	112	2.0	108	87	3	316	17	14	17	50	1.79
33142753--33142793	20	2.0	20	86	9	57	48	12	4	34	1.62
33143375--33143430	27	2.1	27	93	0	94	33	25	23	17	1.96
33145366--33145517	27	5.7	25	75	11	108	26	8	23	41	1.83
33145367--33145517	53	2.8	53	80	10	155	26	8	23	41	1.83
33145499--33145580	27	3.0	27	83	0	110	36	8	15	39	1.78
33147461--33147504	20	2.2	20	84	8	54	56	9	4	29	1.50
33149813--33149868	27	2.1	27	90	6	87	33	23	23	19	1.97
33150332--33150540	27	7.7	27	75	6	154	30	8	19	41	1.82
33150355--33150540	81	2.3	81	80	7	209	31	8	19	40	1.80
33150469--33150550	27	3.0	27	85	7	121	37	6	15	40	1.73
33161949--33162007	22	2.7	22	91	0	91	11	18	28	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33163838--33163925	39	2.3	39	89	0	131	34	28	19	18	1.95
33163972--33164579	41	14.9	41	85	2	751	20	22	29	27	1.99
33163988--33164578	163	3.6	162	90	2	837	20	22	29	26	1.99
33164698--33164726	15	1.9	15	100	0	58	20	0	34	44	1.52
33164740--33164795	14	4.1	14	90	4	96	19	0	46	33	1.50
33164692--33164856	7	23.7	7	74	14	83	20	0	36	41	1.57
33164692--33164853	21	7.8	20	69	13	96	20	0	37	41	1.57
33165843--33165887	23	1.9	23	86	4	63	53	6	8	31	1.58
33166399--33166501	29	3.5	29	67	19	77	11	14	7	66	1.45
33169334--33169453	43	2.8	43	83	2	134	27	16	24	31	1.96
33177708--33177769	13	4.8	13	76	11	74	37	29	4	29	1.78
33177708--33177769	25	2.4	25	84	10	90	37	29	4	29	1.78
33182949--33182990	12	3.8	12	78	18	54	35	0	0	64	0.94
33183065--33183107	21	2.0	21	81	0	50	39	4	4	51	1.44
33189058--33189285	43	5.3	43	89	3	309	29	20	22	26	1.99
33189058--33189329	85	3.2	85	82	7	309	29	21	22	26	1.99
33189066--33189329	128	2.1	128	81	7	304	30	21	21	26	1.98
33189762--33189809	21	2.3	21	85	7	62	4	43	16	35	1.67
33192161--33192317	80	2.0	80	87	5	228	33	21	17	27	1.96
33192161--33192301	40	3.5	40	92	0	246	32	22	17	27	1.96
33195215--33195389	50	3.5	49	79	6	181	30	26	18	25	1.98
33200093--33200122	11	2.7	11	94	0	51	40	6	3	50	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33201627--33201767	44	3.2	43	82	8	151	39	22	5	32	1.78
33209497--33209568	27	2.7	27	80	6	85	33	19	15	31	1.93
33213919--33213952	5	7.0	5	86	6	52	20	0	0	79	0.73
33213919--33213952	14	2.4	14	90	5	50	20	0	0	79	0.73
33220478--33220508	13	2.5	13	94	5	55	32	29	19	19	1.96
33226694--33226722	15	1.9	15	100	0	58	44	0	0	55	0.99
33230830--33230864	2	17.5	2	93	0	61	0	51	0	48	1.00
33231048--33231107	24	2.5	24	84	10	79	68	0	1	30	0.99
33236718--33236765	19	2.5	19	96	0	87	60	4	18	16	1.51
33236853--33236909	6	9.5	6	94	0	69	61	0	22	15	1.34

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211