genome.fa.s14.2.7.7.80.10.50.1000.187.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  187  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55514461--55514788	44	7.6	44	73	12	227	31	21	20	26	1.98
55516646--55516671	3	8.7	3	100	0	52	34	0	0	65	0.93
55518957--55518986	12	2.4	13	94	5	53	90	3	6	0	0.56
55524769--55525076	37	7.6	45	87	9	270	27	21	14	36	1.93
55524855--55525039	37	5.0	37	95	0	307	27	20	14	37	1.91
55527160--55527190	15	2.1	15	93	0	53	29	29	6	35	1.82
55527818--55527952	70	2.0	67	91	5	218	35	13	8	42	1.75
55532954--55532996	18	2.4	18	88	0	59	67	4	0	27	1.10
55533000--55533051	20	2.5	21	81	3	52	59	3	11	25	1.49
55536779--55536839	29	2.1	29	85	11	81	60	0	3	36	1.13
55558297--55558343	20	2.3	21	82	14	62	46	2	2	48	1.25
55568985--55569088	50	2.1	50	92	0	172	31	19	21	27	1.97
55575212--55575246	18	1.9	18	88	0	52	74	8	8	8	1.23
55578188--55578248	22	2.7	22	78	12	70	40	3	0	55	1.16
55581607--55581662	29	1.9	30	85	7	80	39	0	10	50	1.37
55581619--55581679	29	2.1	29	82	11	72	37	1	9	50	1.45
55584455--55584550	19	4.7	21	79	10	74	39	16	6	37	1.74
55584455--55584512	22	2.6	22	81	7	64	39	18	5	36	1.74
55584491--55584563	19	3.8	19	92	0	128	36	15	9	38	1.80
55588743--55588901	46	3.5	46	93	3	270	33	14	23	28	1.94
55588838--55588965	62	2.0	64	94	5	226	33	12	25	28	1.92
55588792--55589006	108	2.0	107	95	0	385	33	14	24	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55588900--55589006	46	2.4	44	90	4	162	33	14	24	27	1.95
55593289--55593404	57	2.0	57	98	0	223	35	5	21	37	1.76
55601095--55601152	29	2.0	30	82	3	73	24	24	15	36	1.94
55601162--55601325	29	5.7	29	74	9	156	26	23	11	39	1.89
55601162--55601321	87	1.8	87	84	5	216	26	23	11	39	1.88
55614242--55614419	27	6.6	27	80	3	187	26	15	28	29	1.96
55614243--55614398	82	1.9	81	86	3	224	26	16	28	28	1.97
55614239--55614419	82	2.2	81	82	2	220	27	16	27	29	1.97
55622327--55622504	27	6.6	27	81	3	187	27	15	27	29	1.96
55622328--55622483	82	1.9	81	85	3	215	27	16	27	28	1.97
55622324--55622504	82	2.2	81	81	2	211	27	16	27	29	1.97
55622409--55622515	27	3.9	27	81	3	81	27	15	27	29	1.96
55627332--55627356	4	6.2	4	100	0	50	52	24	0	24	1.48
55642277--55642336	31	1.9	31	89	0	93	26	16	5	51	1.65
55645845--55645889	3	15.0	3	100	0	90	0	33	0	66	0.92
55649265--55649308	22	2.0	22	91	4	72	29	6	13	50	1.68
55651515--55651557	18	2.4	19	84	11	63	37	0	0	62	0.95
55652796--55652867	34	2.1	34	82	5	83	36	22	11	30	1.89
55653044--55653232	41	4.6	41	89	0	288	23	28	19	28	1.98
55654226--55654264	4	9.8	4	100	0	78	51	23	0	25	1.49
55657850--55657973	43	2.9	43	81	11	146	20	18	29	30	1.97
55659322--55659369	19	2.5	20	93	3	80	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55659323--55659376	19	2.8	20	85	5	74	31	0	1	66	1.02
55661967--55662037	33	2.2	33	82	5	81	46	12	18	22	1.82
55664633--55664670	11	3.5	11	82	13	51	44	2	0	52	1.14
55675249--55675274	13	2.0	13	100	0	52	23	23	7	46	1.78
55679092--55679288	42	4.7	42	85	2	243	15	20	16	47	1.82
55679092--55679293	21	9.6	21	70	5	122	15	20	16	47	1.83
55682733--55682802	23	3.3	23	65	19	69	41	10	12	35	1.77
55682726--55682804	41	1.9	41	100	0	158	39	10	15	35	1.81
55687806--55687843	19	2.1	19	85	5	51	39	0	7	52	1.31
55700885--55701054	63	2.7	63	86	0	223	33	31	9	25	1.88
55702280--55702367	31	2.9	29	80	6	86	37	4	15	42	1.68
55702520--55702557	19	2.1	19	90	5	60	55	2	7	34	1.43
55704296--55704341	20	2.2	20	85	11	58	39	2	4	54	1.32
55705824--55705892	31	2.2	31	92	0	111	36	14	8	40	1.77
55706626--55706650	5	5.0	5	100	0	50	0	80	0	20	0.72
55706752--55706811	30	2.0	31	83	3	77	20	38	0	41	1.52
55720040--55720108	22	3.1	22	75	8	68	43	18	23	14	1.87
55722040--55722083	22	2.0	23	81	4	54	56	25	11	6	1.58
55724610--55724698	45	2.0	45	95	0	160	39	16	4	39	1.69
55735257--55735284	14	2.0	14	100	0	56	78	7	7	7	1.09
55736393--55736444	26	2.0	26	96	0	95	51	15	21	11	1.74
55739701--55739799	28	3.6	27	84	9	119	31	12	28	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55743787--55743902	41	2.8	40	77	11	128	31	27	21	19	1.98
55743942--55744118	64	2.7	64	84	7	203	41	17	7	33	1.79
55743942--55744100	64	2.4	67	86	7	209	40	17	8	33	1.79
55748583--55748626	21	2.0	22	86	4	63	59	2	0	38	1.10
55750616--55750711	48	2.0	48	91	0	156	34	15	23	26	1.95
55752557--55752710	73	2.1	73	79	2	166	33	22	24	18	1.97
55752685--55752747	26	2.4	26	78	0	81	36	20	23	19	1.95
55757670--55757712	19	2.2	20	80	12	54	30	18	2	48	1.60
55759342--55759373	13	2.5	13	94	0	55	56	12	0	31	1.37
55760517--55760622	42	2.5	42	96	0	194	36	23	19	19	1.95
55760517--55760622	21	5.0	22	68	9	85	36	23	19	19	1.95
55768196--55768250	16	3.5	15	80	9	56	40	5	21	32	1.76
55770518--55770553	16	2.2	16	90	0	54	30	22	5	41	1.76
55771533--55771577	23	2.0	23	86	4	65	48	15	4	31	1.65
55781178--55781215	18	2.1	19	85	5	51	71	0	21	7	1.11
55781809--55781836	5	5.6	5	100	0	56	82	0	0	17	0.68
55785437--55785488	5	11.0	5	74	25	51	59	0	0	40	0.97
55785437--55785475	14	3.0	13	89	10	62	56	0	0	43	0.99
55785441--55785486	23	2.0	22	91	4	74	58	0	0	41	0.98
55787148--55787229	26	3.2	26	74	5	69	19	24	18	37	1.94
55787170--55787310	25	5.6	25	66	15	69	19	26	21	31	1.97
55788210--55788254	22	2.0	22	100	0	90	35	8	17	37	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55790823--55790916	47	2.0	47	95	0	170	25	18	24	31	1.97
55793093--55793157	25	2.6	25	80	9	71	38	15	15	30	1.88
55799119--55799166	18	2.7	17	81	9	60	41	4	16	37	1.68
55800221--55800311	25	3.6	25	67	5	60	31	21	25	20	1.98
55802270--55802298	10	2.7	11	89	10	51	17	17	6	58	1.59
55803785--55803813	6	4.8	6	100	0	58	48	0	34	17	1.47
55804718--55804742	13	1.9	13	100	0	50	52	0	0	48	1.00
55804757--55804786	12	2.6	12	94	5	53	66	0	6	26	1.16
55808039--55808072	5	6.8	5	87	12	52	0	17	0	82	0.67
55825499--55825624	62	2.0	62	92	0	207	19	19	10	50	1.75
55826848--55826897	22	2.3	22	89	0	73	8	24	14	54	1.66
55826888--55826972	39	2.3	37	91	6	136	25	15	20	38	1.91
55829698--55829752	13	4.2	13	80	0	65	36	27	3	32	1.74
55830154--55830206	9	5.9	9	86	0	79	22	11	26	39	1.88
55830157--55830206	18	2.8	18	93	0	91	24	12	24	40	1.88
55834151--55834189	16	2.4	16	95	0	69	30	23	15	30	1.95
55839694--55839740	18	2.4	20	86	10	62	42	2	6	48	1.40
55846616--55846645	14	2.1	15	93	6	53	90	3	6	0	0.56
55846616--55846645	15	2.0	15	93	0	51	90	3	6	0	0.56
55849785--55849874	36	2.5	36	77	10	87	45	3	0	51	1.18
55852783--55852874	19	4.8	19	83	0	112	34	27	21	16	1.95
55859611--55859755	68	2.1	71	80	7	163	52	4	2	41	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55859819--55859843	11	2.3	11	100	0	50	36	48	0	16	1.46
55860061--55860096	13	2.8	13	95	0	63	33	13	8	44	1.74
55863851--55863939	30	3.0	30	77	8	76	46	1	2	50	1.21
55865163--55865273	54	2.1	54	91	0	177	38	14	11	35	1.83
55877208--55877252	21	2.1	22	91	4	74	66	11	17	4	1.38
55877208--55877276	20	3.4	20	80	6	68	65	11	17	5	1.44
55877361--55877443	26	3.2	25	83	10	105	56	1	26	15	1.47
55877550--55877604	23	2.3	23	84	9	67	80	0	14	5	0.89
55877568--55877610	20	2.2	20	87	8	61	76	0	13	9	1.01
55879280--55879346	34	2.0	34	100	0	134	28	14	17	38	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211