genome.fa.s14.2.7.7.80.10.50.1000.188.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  188  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55883314--55883340	3	9.0	3	100	0	54	33	33	0	33	1.58
55885649--55885700	27	1.9	27	96	0	95	21	3	15	59	1.52
55885649--55885718	27	2.6	27	82	11	72	22	4	14	58	1.53
55885823--55885853	11	2.8	11	90	0	53	67	0	0	32	0.91
55885823--55885857	11	3.1	11	91	4	52	65	0	0	34	0.93
55889813--55889970	44	3.4	44	88	6	208	29	24	15	30	1.96
55889805--55889963	51	3.3	50	86	9	222	28	24	15	31	1.95
55893020--55893045	6	4.3	6	100	0	52	80	0	0	19	0.71
55893001--55893103	40	2.5	42	80	9	124	66	0	0	32	0.98
55893068--55893092	13	1.9	13	100	0	50	88	0	0	12	0.53
55893891--55893928	18	2.1	18	95	0	67	18	0	23	57	1.40
55893891--55893928	9	4.2	9	83	12	51	18	0	23	57	1.40
55894044--55894613	126	4.5	125	87	3	797	30	17	22	29	1.96
55895542--55895579	20	1.9	20	84	10	51	55	7	2	34	1.43
55896505--55896603	51	1.9	51	84	11	132	45	3	23	28	1.67
55896582--55896639	11	5.2	11	78	2	62	41	1	32	24	1.65
55902012--55902045	17	1.9	18	94	5	61	38	11	17	32	1.86
55905507--55905539	17	1.9	18	88	11	52	75	0	6	18	1.00
55906587--55906660	29	2.6	29	97	0	139	32	28	13	25	1.94
55913747--55913809	30	2.1	30	93	0	108	57	14	3	25	1.52
55919240--55919288	26	1.9	25	83	4	62	28	6	18	46	1.72
55921394--55921446	19	2.8	19	79	0	70	13	24	32	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55924018--55924173	43	3.6	42	82	7	181	23	16	28	31	1.96
55928154--55928182	12	2.3	13	94	5	51	0	20	0	79	0.74
55928838--55928864	2	13.5	2	100	0	54	0	0	48	51	1.00
55937940--55937974	6	5.7	6	89	3	52	0	62	0	37	0.95
55940024--55940077	19	2.8	19	80	5	56	38	0	3	57	1.17
55940025--55940076	27	1.9	27	84	7	70	38	0	3	57	1.17
55940190--55940244	21	2.6	21	91	0	83	30	34	7	27	1.84
55942745--55942780	14	2.5	14	90	4	54	66	0	0	33	0.92
55942754--55942781	14	2.0	14	100	0	56	64	0	0	35	0.94
55943812--55943845	11	3.1	11	87	12	52	70	0	20	8	1.13
55943892--55944090	51	4.0	49	74	7	193	26	17	27	29	1.97
55943898--55944082	102	1.8	101	84	5	257	26	17	25	30	1.97
55948896--55949137	19	11.5	20	71	17	100	31	0	13	54	1.45
55948897--55949228	97	3.8	83	76	16	237	31	0	12	54	1.45
55949032--55949275	48	5.1	48	85	4	323	31	0	13	53	1.46
55949042--55949228	27	7.8	24	76	19	187	31	1	12	55	1.45
55949036--55949275	97	2.5	97	91	3	387	31	0	14	53	1.46
55949269--55949390	60	2.0	60	85	3	165	30	0	14	54	1.47
55949424--55949505	38	2.2	38	97	0	155	54	3	2	39	1.31
55949542--55949583	16	2.7	15	89	7	66	40	0	2	57	1.12
55951208--55951262	6	9.3	6	90	4	85	34	32	30	1	1.69
55954673--55954743	27	2.6	28	84	6	92	25	38	19	16	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55960006--55960030	12	2.1	12	100	0	50	60	8	0	32	1.26
55961094--55961133	16	2.5	16	95	0	71	37	5	35	22	1.76
55961122--55961211	45	2.0	44	82	2	108	31	6	27	34	1.83
55961375--55961409	18	2.0	17	88	5	52	54	0	0	45	0.99
55961403--55961590	61	3.1	61	70	14	199	47	7	2	42	1.45
55961493--55961529	16	2.2	17	86	13	51	54	0	2	43	1.14
55961613--55961649	16	2.2	17	86	13	51	54	0	2	43	1.14
55961355--55961650	120	2.5	120	97	1	558	48	5	2	44	1.37
55961589--55961872	91	3.0	97	84	10	276	47	3	2	46	1.33
55961691--55961842	44	3.4	43	72	18	139	49	3	1	45	1.29
55961666--55961872	91	2.3	91	93	0	351	46	3	2	46	1.36
55970743--55970809	19	3.2	23	61	30	58	37	8	10	43	1.71
55972541--55972610	27	2.6	27	80	8	79	25	2	21	50	1.63
55973953--55974019	34	1.9	35	84	3	91	44	11	10	32	1.75
55973988--55974029	14	3.0	14	82	0	57	42	16	9	30	1.80
55978292--55978428	57	2.3	57	83	8	168	27	18	27	26	1.98
55978558--55978686	67	1.9	67	96	0	240	20	17	32	28	1.96
55983886--55983922	19	2.0	19	89	5	58	43	24	5	27	1.76
55987898--55987952	12	4.8	12	80	8	62	29	18	0	52	1.45
55987897--55987982	33	2.6	33	83	1	102	29	13	0	56	1.38
55987945--55987997	21	2.5	22	75	6	56	26	13	0	60	1.33
55988058--55988117	5	10.8	5	77	19	57	26	20	1	51	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55988046--55988122	23	3.1	24	74	16	77	27	18	1	53	1.52
55988046--55988117	28	2.6	28	84	8	85	26	19	1	52	1.54
55988069--55988117	11	4.5	11	85	7	64	26	18	2	53	1.56
55988152--55988200	25	2.0	25	83	0	62	40	10	2	46	1.49
55988327--55988409	12	7.2	12	67	24	54	22	16	0	60	1.36
55988330--55988381	17	2.9	17	88	5	68	23	21	0	55	1.43
55988369--55988420	27	1.9	27	84	7	70	23	11	1	63	1.37
55988375--55988576	22	9.2	20	69	18	95	23	12	1	62	1.40
55988445--55988516	28	2.5	27	82	14	83	26	12	2	58	1.48
55988440--55988514	12	6.6	12	69	24	56	26	13	2	57	1.50
55988327--55988516	17	11.2	17	70	18	62	23	13	2	60	1.44
55988349--55988523	22	7.9	21	70	21	65	25	12	2	59	1.45
55988536--55988594	22	2.8	22	80	12	61	20	13	0	66	1.25
55988351--55988654	128	2.3	130	81	10	327	24	12	1	61	1.39
55989959--55989987	5	6.0	5	92	8	51	62	37	0	0	0.96
55998406--55998757	44	7.8	44	77	6	269	33	16	19	30	1.94
55998806--55999145	44	7.4	47	82	8	325	32	14	22	31	1.94
55998971--55999177	88	2.4	88	87	1	281	31	15	20	32	1.94
55998975--55999177	44	4.6	44	85	1	219	31	15	20	32	1.94
55998806--55999178	132	2.7	132	76	9	361	33	15	20	30	1.93
55999511--55999559	22	2.2	22	92	0	80	8	55	18	18	1.67
56003262--56003334	37	2.0	37	97	0	137	13	20	28	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56003833--56003858	12	2.2	12	100	0	52	76	15	7	0	0.99
56003962--56004096	54	2.5	54	79	9	143	45	21	15	17	1.84
56017252--56017312	26	2.3	27	89	10	99	40	4	0	54	1.22
56017951--56018009	19	3.2	19	82	4	84	37	13	0	49	1.43
56024096--56024151	6	9.3	6	100	0	112	50	16	0	33	1.45
56029113--56029173	27	2.3	27	82	5	79	60	1	1	36	1.16
56030884--56030927	21	2.0	22	83	12	56	43	0	34	22	1.54
56031498--56031574	26	3.0	26	86	7	77	24	25	9	40	1.85
56031518--56031574	26	2.2	26	96	0	105	24	29	5	40	1.77
56039448--56039491	21	2.0	23	82	8	56	52	0	4	43	1.22
56040256--56040290	17	2.0	18	88	5	54	65	5	5	22	1.36
56040776--56040917	13	10.8	13	81	3	151	52	7	4	34	1.52
56040785--56040912	40	3.2	40	85	7	163	53	8	4	33	1.52
56040778--56040917	53	2.6	54	85	4	169	52	7	4	35	1.50
56041985--56042015	2	15.5	2	100	0	62	51	0	0	48	1.00
56046249--56046354	39	2.7	39	100	0	212	31	18	14	35	1.91
56046376--56046431	16	3.5	16	75	18	62	19	28	3	48	1.66
56046373--56046447	32	2.3	32	97	0	141	22	26	2	48	1.64
56046392--56046448	16	3.6	16	73	17	64	22	26	1	49	1.60
56048923--56048964	21	2.0	21	95	0	75	42	0	16	40	1.48
56054467--56054494	14	2.0	14	100	0	56	42	7	0	50	1.30
56058311--56058368	30	1.9	30	82	6	73	55	5	12	27	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56058494--56058591	19	4.8	19	80	13	106	36	6	16	40	1.73
56058495--56058557	21	3.1	21	90	4	94	38	6	14	41	1.71
56058557--56058601	23	2.0	23	86	4	65	33	4	15	46	1.66
56058767--56058802	16	2.2	17	90	5	56	11	8	5	75	1.19
56059164--56059204	16	2.7	15	85	11	57	36	9	2	51	1.48
56059198--56059253	20	2.8	20	83	2	78	39	7	0	53	1.28
56059136--56059352	104	2.1	105	86	1	301	35	7	3	53	1.48
56063603--56063636	6	6.0	6	93	6	54	82	0	17	0	0.67
56063604--56063636	11	3.0	11	83	16	50	81	0	18	0	0.68
56064862--56065881	132	7.7	132	90	1	1544	29	15	25	30	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211