genome.fa.s14.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  95  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26256492--26256688	90	2.2	87	83	4	250	35	8	18	37	1.81
26257960--26258076	46	2.6	46	83	4	148	18	13	23	44	1.85
26257960--26258090	46	2.9	46	82	3	131	20	12	22	44	1.85
26259380--26259405	5	5.2	5	100	0	52	0	0	57	42	0.98
26277062--26277264	24	8.6	23	74	14	137	56	4	6	32	1.47
26279537--26279576	20	1.9	22	90	10	66	72	7	2	17	1.19
26286500--26286537	14	2.6	14	95	4	67	21	36	7	34	1.82
26287636--26287669	12	2.8	12	90	0	50	50	2	0	47	1.16
26287712--26287750	20	2.0	20	94	0	69	53	2	0	43	1.14
26299190--26299219	12	2.4	13	94	5	53	0	0	10	90	0.47
26310945--26310986	22	2.0	22	85	4	59	45	0	14	40	1.45
26317193--26317225	16	2.1	16	100	0	66	42	6	33	18	1.75
26319838--26319864	13	2.1	13	100	0	54	37	18	14	29	1.91
26320700--26320724	13	1.9	13	100	0	50	52	8	32	8	1.60
26325163--26325211	16	3.1	15	78	18	55	28	0	2	69	1.00
26344187--26344212	2	13.0	2	100	0	52	50	50	0	0	1.00
26349733--26349776	21	2.2	20	88	12	63	25	36	0	38	1.56
26353941--26354010	11	6.3	10	80	11	50	72	4	21	1	1.09
26353967--26354010	12	3.8	12	93	3	72	75	0	25	0	0.81
26353924--26354010	22	3.9	22	72	11	70	73	3	19	3	1.12
26361604--26361650	24	2.0	24	84	16	62	31	0	17	51	1.46
26361628--26361676	15	3.1	15	76	21	55	36	0	14	48	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26361809--26361948	40	3.5	40	76	6	151	27	17	25	30	1.97
26365126--26365225	49	2.0	49	100	0	200	40	15	8	37	1.76
26372922--26372996	37	2.0	37	100	0	150	32	10	13	44	1.78
26390028--26390559	249	2.1	250	91	2	867	28	17	22	31	1.97
26390028--26390559	125	4.3	125	90	1	836	28	17	22	31	1.97
26394809--26394868	22	2.4	27	69	28	69	25	0	30	45	1.54
26393725--26396086	21	112.2	21	84	3	2767	25	0	27	46	1.57
26397513--26397550	20	1.9	20	84	10	51	55	7	2	34	1.43
26398443--26398483	10	4.0	10	81	6	55	65	0	0	34	0.93
26398446--26398483	11	3.5	11	78	7	51	71	0	0	28	0.87
26398443--26398483	21	2.0	21	90	0	64	65	0	0	34	0.93
26398538--26398589	22	2.4	22	90	6	79	42	0	32	25	1.55
26400499--26400552	26	2.1	26	96	0	99	48	5	0	46	1.25
26400819--26400861	20	2.2	20	86	0	59	48	0	4	46	1.22
26409862--26409895	14	2.5	14	85	4	52	47	0	2	50	1.16
26411894--26411920	6	4.5	6	100	0	54	44	0	37	18	1.50
26412072--26412142	27	2.7	27	82	10	85	38	7	18	36	1.78
26412191--26412219	14	2.1	14	100	0	58	31	0	13	55	1.39
26412179--26412225	23	2.0	23	91	0	76	34	0	12	53	1.39
26421411--26421622	45	4.7	45	82	0	244	36	18	21	23	1.95
26421592--26421759	46	3.7	45	80	7	171	45	14	22	18	1.85
26429965--26430264	27	11.1	27	80	9	283	45	19	15	19	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26430449--26430525	26	3.0	26	86	0	91	16	16	22	44	1.87
26432492--26432614	41	3.0	40	79	10	131	31	26	19	21	1.97
26432457--26432614	42	3.7	43	76	9	137	29	26	20	23	1.99
26440283--26440798	27	19.1	27	77	8	369	42	18	15	23	1.88
26440283--26440798	54	9.6	54	81	7	480	42	18	15	23	1.88
26440283--26440770	81	6.0	80	80	7	452	42	18	15	24	1.89
26440959--26441052	26	3.6	26	80	1	89	18	20	21	40	1.92
26440954--26441053	52	1.9	51	86	11	141	18	20	21	41	1.91
26440980--26441055	26	2.9	26	86	0	107	17	21	21	40	1.91
26441167--26441227	28	2.2	28	85	2	79	29	21	19	29	1.98
26443945--26444071	45	2.8	45	83	4	141	44	18	18	18	1.87
26443998--26444204	45	4.6	46	77	5	181	41	17	18	22	1.90
26444134--26444299	46	3.6	45	80	2	170	48	15	16	18	1.81
26457573--26457632	15	4.1	14	79	12	50	73	1	20	5	1.11
26457602--26457644	16	2.6	17	85	7	54	72	4	20	2	1.14
26463586--26463689	42	2.5	42	84	3	120	21	34	21	23	1.97
26468838--26468934	44	2.2	44	96	3	178	40	14	4	41	1.65
26469447--26469557	53	2.1	53	94	0	195	26	14	14	45	1.83
26480426--26480458	17	2.0	17	94	5	59	78	3	0	18	0.87
26481545--26481576	12	2.7	12	95	0	55	6	18	43	31	1.75
26486590--26486629	3	13.3	3	100	0	80	67	0	32	0	0.91
26486628--26486653	3	8.7	3	100	0	52	34	0	34	30	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26490766--26490819	13	4.1	13	78	4	54	68	3	7	20	1.30
26493494--26493538	19	2.4	18	85	14	56	51	0	4	44	1.21
26497435--26497843	27	15.2	26	80	6	413	42	22	16	19	1.89
26497435--26497843	81	5.1	81	84	0	478	42	22	16	19	1.89
26504145--26504175	15	2.1	15	93	0	53	25	3	0	70	1.02
26523955--26524001	24	2.0	24	83	8	60	36	0	2	61	1.08
26525626--26525757	50	2.6	50	84	0	156	27	24	26	21	1.99
26530007--26530048	21	2.0	21	86	9	59	40	2	0	57	1.12
26530015--26530053	5	7.4	5	91	2	51	35	2	0	61	1.10
26531894--26531956	31	2.0	32	96	3	119	25	9	30	34	1.88
26533193--26533363	27	6.3	27	78	4	148	35	12	25	27	1.91
26533202--26533354	81	1.9	81	88	0	234	35	9	24	29	1.88
26535200--26535250	18	2.8	18	72	0	57	17	29	3	49	1.65
26542253--26542298	23	2.0	23	83	8	58	39	4	15	41	1.67
26545722--26545760	17	2.3	17	90	0	60	69	2	2	25	1.14
26546649--26546703	27	2.0	27	96	0	101	30	16	27	25	1.96
26548636--26548712	33	2.3	33	81	2	91	32	3	3	59	1.34
26548651--26548711	15	3.9	15	75	12	59	32	1	3	62	1.21
26548648--26548711	33	1.9	33	87	0	92	34	1	3	60	1.22
26550014--26550085	27	2.7	27	80	6	67	26	33	13	26	1.94
26555883--26555934	26	2.0	26	85	7	70	13	5	26	53	1.62
26558556--26558648	43	2.2	43	82	3	116	30	17	23	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26558577--26558673	43	2.3	43	80	3	106	30	17	23	27	1.97
26561818--26561887	32	2.2	33	86	2	97	31	15	22	30	1.95
26561849--26561946	43	2.3	43	80	7	119	29	17	24	28	1.97
26564579--26564618	16	2.5	16	87	0	62	32	0	17	50	1.47
26565118--26565159	21	2.0	21	86	9	59	30	2	2	64	1.19
26567149--26567258	54	2.0	54	87	0	157	54	8	10	26	1.63
26574029--26574072	21	2.1	21	87	8	63	38	4	11	45	1.61
26579700--26579737	20	1.9	20	89	10	60	50	10	18	21	1.76
26583084--26583119	18	1.9	19	88	5	56	25	5	19	50	1.69
26591704--26591761	30	1.9	30	85	0	80	39	1	25	32	1.66
26592104--26592345	50	4.7	50	79	6	204	28	20	26	24	1.99
26593943--26593968	12	2.2	12	100	0	52	34	15	15	34	1.89
26597007--26597039	16	2.0	17	94	5	59	54	0	15	30	1.41
26619283--26619312	4	7.5	4	92	0	51	73	0	0	26	0.84
26621313--26621342	9	3.4	9	90	9	53	70	0	0	30	0.88
26624767--26624795	3	10.0	3	92	7	51	0	34	0	65	0.93
26645019--26645257	50	4.7	51	81	5	218	28	21	27	23	1.99
26646124--26646175	15	3.4	16	75	25	58	59	0	0	40	0.97
26646116--26646168	24	2.1	26	86	10	74	56	0	0	43	0.99
26646116--26646180	30	2.3	27	86	7	85	58	0	0	41	0.98
26646687--26646886	108	1.9	106	91	2	328	33	20	19	28	1.96
26648373--26648411	10	3.9	10	83	10	53	79	0	2	17	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26648373--26648410	19	2.0	20	89	5	60	78	0	2	18	0.86
26649100--26649391	44	6.8	43	72	9	193	25	21	22	30	1.99
26649100--26649411	129	2.4	129	91	1	482	24	21	23	31	1.98
26649412--26650519	100	11.1	100	89	2	1442	24	21	22	31	1.98
26649428--26650519	50	21.9	49	69	7	615	24	21	22	31	1.98
26650817--26650878	24	2.6	25	77	12	76	29	22	8	40	1.82
26654788--26654986	108	1.9	105	87	5	292	33	19	19	28	1.96
26655661--26655746	14	6.2	14	73	8	52	59	0	4	36	1.18
26655663--26655692	12	2.6	12	94	5	53	56	0	6	36	1.26
26655679--26655720	7	5.7	7	91	8	66	69	0	0	30	0.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211