genome.fa.s14.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  133  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39003932--39004125	42	4.6	43	80	11	197	31	25	14	28	1.95
39010907--39011041	42	3.2	42	87	2	155	33	25	14	27	1.94
39018750--39018805	29	2.0	29	85	3	78	26	5	14	53	1.62
39018900--39018927	14	2.0	14	100	0	56	28	21	28	21	1.99
39020641--39020670	14	2.1	14	100	0	60	13	13	36	36	1.84
39024391--39024419	3	9.7	3	100	0	58	31	0	0	68	0.89
39025104--39025199	40	2.4	39	85	1	129	33	13	23	29	1.93
39025682--39025716	15	2.4	14	86	9	52	22	0	37	40	1.55
39025723--39025758	15	2.4	15	90	0	54	13	0	50	36	1.43
39025700--39025750	21	2.4	22	80	9	61	15	0	43	41	1.47
39025727--39025824	8	13.6	7	70	19	51	19	0	39	40	1.52
39025753--39025795	22	2.0	21	82	13	52	27	0	34	37	1.57
39025825--39025883	24	2.5	24	83	5	77	38	1	0	59	1.08
39026059--39026099	21	2.0	21	85	4	57	19	0	36	43	1.51
39026067--39026141	21	3.6	21	76	7	64	25	0	37	37	1.56
39026397--39026423	9	3.0	9	100	0	54	33	0	11	55	1.35
39030087--39030357	43	6.3	43	89	0	389	18	16	32	31	1.94
39033226--39033341	61	1.9	59	87	3	169	52	4	3	39	1.38
39044548--39044920	31	12.2	31	75	7	287	43	16	7	32	1.75
39044528--39044920	61	6.4	62	74	8	295	44	16	7	32	1.74
39044548--39044920	92	4.1	92	83	2	428	43	16	7	32	1.75
39058421--39058464	21	2.1	21	95	0	79	27	15	9	47	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39063324--39063379	26	2.2	26	96	3	105	41	3	14	41	1.63
39076820--39076860	19	2.2	19	86	4	57	26	0	9	63	1.25
39079332--39079360	7	4.3	7	91	8	51	86	0	0	13	0.58
39079333--39079360	13	2.2	13	100	0	56	85	0	0	14	0.59
39081258--39081299	15	3.0	14	86	10	59	14	0	11	73	1.09
39081771--39082496	360	2.0	357	92	1	1220	27	28	8	34	1.86
39083624--39083649	13	2.0	13	100	0	52	46	0	0	53	1.00
39084833--39084982	63	2.4	63	81	0	183	24	18	26	30	1.98
39087793--39087928	37	3.6	36	77	4	110	40	13	16	30	1.86
39087747--39087978	112	2.1	112	83	0	284	40	13	14	31	1.85
39093246--39093311	10	6.2	11	72	20	52	63	3	3	30	1.24
39096682--39096708	4	6.8	4	100	0	54	22	51	0	25	1.48
39098862--39098991	50	2.4	54	82	7	151	20	30	20	28	1.98
39108240--39108280	15	2.6	16	78	14	50	0	29	0	70	0.87
39113891--39113988	50	2.0	50	89	0	151	45	12	13	28	1.79
39114088--39114125	19	2.0	20	84	5	51	55	13	10	21	1.67
39122318--39122379	30	2.1	30	87	6	90	32	6	8	53	1.56
39127211--39127246	13	2.8	13	95	0	63	44	19	0	36	1.51
39131456--39131480	11	2.3	11	100	0	50	36	0	0	64	0.94
39140503--39140533	14	2.2	14	100	0	62	22	6	22	48	1.73
39150031--39150504	236	2.0	236	99	0	939	32	13	14	39	1.84
39157829--39158051	39	5.7	38	84	4	250	18	32	16	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39157881--39158023	20	7.3	20	63	15	66	18	35	16	30	1.92
39157864--39158002	19	7.2	19	61	16	52	18	33	15	32	1.92
39157827--39158051	117	1.9	117	88	1	335	18	32	16	33	1.93
39162426--39162638	70	3.0	70	81	2	248	30	22	20	27	1.98
39169882--39169973	42	2.2	43	88	4	141	35	4	7	52	1.50
39175580--39175629	16	3.1	17	74	11	50	8	22	2	68	1.26
39175606--39175648	21	2.0	21	82	8	52	6	18	2	72	1.19
39186283--39186330	22	2.2	22	88	0	69	33	39	4	22	1.74
39186653--39186688	18	1.9	19	88	5	56	38	19	8	33	1.82
39188857--39189023	29	5.7	28	69	13	104	21	26	15	35	1.94
39188903--39189027	29	4.3	29	71	8	110	20	29	16	33	1.95
39188897--39189068	87	2.0	87	85	0	236	20	27	15	36	1.93
39193162--39193283	23	5.3	23	87	0	181	31	25	18	24	1.98
39193162--39193283	46	2.7	46	93	0	208	31	25	18	24	1.98
39197589--39197628	12	3.3	12	89	0	62	12	12	40	35	1.81
39201677--39201887	40	5.3	40	82	1	264	27	28	20	23	1.99
39201677--39201887	80	2.7	80	90	1	336	27	28	20	23	1.99
39209700--39209911	40	5.3	39	83	5	264	27	28	20	23	1.99
39209700--39209911	80	2.7	80	91	0	345	27	28	20	23	1.99
39217417--39217486	36	1.9	36	88	0	104	24	22	14	38	1.91
39224859--39224914	26	2.2	26	84	9	71	37	3	19	39	1.69
39227623--39227651	12	2.3	13	94	5	51	20	6	6	65	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39232732--39232801	34	2.1	34	91	0	113	35	18	15	30	1.92
39236059--39236087	14	2.1	14	93	6	51	13	10	0	75	1.04
39244239--39244293	22	2.5	22	93	0	92	25	27	20	27	1.99
39248896--39249065	36	4.7	35	76	7	153	44	13	14	27	1.83
39248898--39249055	72	2.2	72	80	4	176	44	14	13	26	1.83
39250168--39250205	19	2.0	19	94	0	67	36	2	31	28	1.71
39253103--39253169	26	2.6	25	76	9	64	25	4	2	67	1.24
39258847--39259503	143	4.6	143	85	0	825	29	19	22	28	1.98
39258847--39259503	286	2.3	285	86	0	911	29	19	22	28	1.98
39261085--39261126	22	1.9	22	85	9	59	40	4	0	54	1.21
39261177--39261260	26	3.3	24	75	9	69	25	5	4	64	1.36
39262426--39262470	19	2.4	19	88	0	63	26	8	6	57	1.54
39262627--39262651	9	2.8	9	100	0	50	60	0	0	40	0.97
39271253--39271408	82	1.9	81	85	3	215	26	16	28	28	1.97
39271252--39271405	55	2.9	52	82	7	175	27	16	27	27	1.97
39271253--39271408	27	5.7	27	81	6	163	26	16	28	28	1.97
39271245--39271429	27	6.8	27	75	9	101	26	16	28	29	1.97
39271245--39271429	82	2.3	81	78	2	210	26	16	28	29	1.97
39279332--39279487	82	1.9	81	85	3	215	26	16	28	28	1.97
39279331--39279484	55	2.9	52	82	7	175	27	16	27	27	1.97
39279332--39279487	27	5.7	27	81	6	163	26	16	28	28	1.97
39279324--39279508	27	6.8	27	75	9	101	26	16	28	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39279324--39279508	82	2.3	81	78	2	210	26	16	28	29	1.97
39283848--39284032	101	1.8	102	89	5	295	23	16	28	31	1.96
39283847--39284030	51	3.7	49	83	11	230	23	16	28	31	1.96
39290845--39290885	20	1.9	23	85	14	61	48	14	12	24	1.78
39292106--39292141	17	2.1	18	89	5	56	38	11	11	38	1.76
39292958--39293120	82	2.0	82	96	0	299	26	4	18	49	1.67
39303451--39303594	40	3.6	40	89	0	225	27	18	25	29	1.98
39303451--39303749	40	7.6	40	70	10	177	29	18	23	29	1.97
39303378--39303753	195	1.9	194	86	1	538	29	18	22	29	1.98
39304171--39304312	7	19.9	7	73	12	74	23	0	33	42	1.59
39305173--39305214	19	2.2	20	91	4	68	28	45	4	21	1.72
39305861--39305886	3	8.7	3	100	0	52	69	0	0	30	0.89
39312548--39312612	10	7.3	9	77	16	73	35	0	0	64	0.94
39312591--39312629	10	3.5	11	83	16	53	30	2	0	66	1.05
39312572--39312639	26	2.7	25	76	13	59	36	1	0	61	1.05
39313750--39313787	19	2.0	19	94	0	67	39	5	5	50	1.48
39316847--39317119	110	2.5	110	84	1	341	35	14	23	27	1.93
39342319--39342353	16	2.2	16	90	10	54	74	2	0	22	0.95
39343588--39343637	20	2.5	20	78	12	59	46	6	6	42	1.53
39343700--39343751	19	2.7	20	82	11	63	38	5	17	38	1.74
39344517--39344550	18	1.9	18	88	5	52	73	0	14	11	1.10
39346713--39346818	50	2.1	50	83	0	131	27	19	32	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39346728--39346852	50	2.5	50	85	0	151	26	21	29	22	1.99
39347120--39347158	20	2.0	20	89	0	60	53	2	25	17	1.56
39350627--39350659	5	6.4	5	93	6	57	39	0	21	39	1.53
39351124--39351223	25	4.1	25	71	17	93	19	26	23	32	1.97
39356919--39357068	79	1.9	79	90	2	239	34	11	19	34	1.87
39357717--39357813	50	1.9	50	91	0	158	29	2	22	45	1.64
39357720--39357827	50	2.2	50	84	3	137	32	1	21	44	1.63
39358411--39358667	138	1.9	137	81	5	313	23	19	22	33	1.97
39364503--39364527	12	2.1	12	100	0	50	48	8	0	44	1.32
39366074--39366258	40	4.6	40	88	0	235	35	27	20	17	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211