genome.fa.s14.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  153  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45301156--45301407	56	4.5	56	94	1	434	43	18	0	37	1.50
45307198--45307243	23	2.0	23	95	0	83	15	13	28	43	1.83
45307280--45307428	43	3.5	43	75	3	149	27	21	20	30	1.98
45314065--45314147	39	2.1	39	95	0	148	30	16	14	38	1.89
45315062--45315137	21	3.8	20	89	6	109	38	9	14	38	1.78
45315476--45315520	3	15.0	3	85	0	63	31	4	2	62	1.27
45315434--45315493	20	2.9	20	76	14	59	26	1	6	65	1.27
45315643--45315686	17	2.6	17	85	3	63	38	11	2	47	1.52
45315849--45315906	31	1.9	31	89	3	91	34	3	3	58	1.32
45315847--45315926	28	2.8	27	79	5	70	33	3	5	57	1.38
45320248--45320638	88	4.4	88	87	0	557	28	26	22	21	1.99
45320297--45320528	44	5.3	44	65	4	117	26	25	23	24	2.00
45320448--45320582	43	3.1	42	67	8	108	27	28	24	19	1.98
45320429--45320572	44	3.3	44	70	7	130	26	31	21	20	1.98
45321090--45321211	44	2.8	44	80	7	131	32	16	20	30	1.95
45321644--45321762	19	5.8	19	80	12	121	36	7	15	40	1.76
45321695--45321762	21	3.0	24	83	8	72	36	7	16	39	1.76
45322066--45322098	12	2.8	12	90	4	50	30	0	6	63	1.18
45322247--45322290	17	2.6	17	85	3	63	40	11	0	47	1.39
45322454--45322510	30	1.9	30	85	7	80	35	5	3	56	1.39
45324483--45325403	70	13.2	70	79	1	794	24	17	27	30	1.98
45331114--45331169	29	1.9	29	96	0	103	42	8	17	30	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45340932--45341319	205	1.9	205	97	0	731	34	25	10	30	1.89
45343528--45343642	44	2.7	43	81	6	151	31	28	17	22	1.97
45344374--45344407	18	1.9	17	88	5	50	67	14	2	14	1.34
45351516--45351574	23	2.5	23	78	13	59	37	1	3	57	1.25
45352139--45352172	15	2.3	15	94	0	59	17	0	17	64	1.29
45363996--45364117	43	2.8	44	72	3	129	31	14	27	26	1.95
45363980--45364109	43	3.0	43	70	4	116	29	17	26	26	1.98
45363980--45364152	88	2.0	88	81	2	204	29	19	25	26	1.98
45364469--45364629	44	3.8	44	73	13	122	29	20	21	29	1.98
45366389--45366432	19	2.2	20	92	4	72	31	0	4	63	1.14
45366412--45366458	23	2.0	23	83	8	58	36	2	4	57	1.30
45368962--45369074	41	2.9	40	84	9	144	53	8	4	32	1.52
45376214--45376246	14	2.3	15	89	5	50	27	12	33	27	1.92
45376325--45376411	6	14.7	6	76	15	83	79	0	19	1	0.80
45376325--45376416	28	3.6	25	83	15	125	78	0	20	1	0.82
45377490--45377653	44	3.7	44	81	3	150	29	18	21	29	1.97
45377300--45377798	235	2.1	235	90	0	773	32	16	20	30	1.95
45377578--45377939	145	2.5	145	84	2	458	34	18	18	28	1.95
45377870--45377999	44	2.9	45	73	8	113	30	18	20	30	1.97
45380723--45380785	32	2.0	32	87	0	90	36	7	12	42	1.72
45384405--45384445	21	2.0	21	86	13	59	39	0	7	53	1.29
45387125--45387244	40	2.9	42	81	14	119	18	31	27	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45387249--45387307	29	2.1	27	84	9	75	44	13	15	27	1.84
45387622--45387662	9	4.4	9	96	3	73	70	0	0	29	0.87
45387629--45387678	19	2.7	19	84	6	59	72	0	2	26	0.96
45394513--45394573	32	2.0	32	90	6	99	39	27	1	31	1.66
45404614--45404654	4	10.8	4	80	19	52	24	0	0	75	0.80
45405998--45406081	6	13.8	6	79	9	64	11	3	3	80	0.96
45405998--45406081	30	2.8	29	82	10	89	11	3	3	80	0.96
45406010--45406082	24	3.1	23	81	13	78	12	2	2	82	0.89
45406010--45406083	7	9.9	7	75	16	60	13	2	2	81	0.92
45409286--45409315	14	2.1	15	93	6	53	0	33	0	66	0.92
45415944--45416082	74	1.9	74	87	0	206	28	15	16	39	1.89
45423750--45423798	22	2.3	22	85	3	64	24	2	0	73	0.94
45426345--45426410	15	4.6	14	80	12	55	21	0	7	71	1.11
45426350--45426411	10	6.2	10	83	12	65	20	0	8	70	1.12
45436687--45436727	9	4.2	9	85	14	55	46	0	12	41	1.41
45447286--45447368	27	3.0	28	87	5	125	31	21	22	24	1.98
45447295--45447370	27	2.8	28	91	4	127	30	23	22	23	1.99
45447728--45447898	27	6.3	27	82	2	191	19	16	21	42	1.89
45450683--45450713	16	1.9	16	93	0	53	29	3	16	51	1.59
45451854--45451926	21	3.8	19	91	8	121	38	10	15	35	1.82
45451869--45451949	19	3.8	22	79	14	55	38	7	16	38	1.76
45452151--45452195	23	2.0	23	81	0	54	24	0	15	60	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45452420--45452460	3	13.3	3	89	5	64	31	2	0	65	1.05
45452506--45452568	33	1.9	33	83	6	83	34	6	1	57	1.34
45452730--45452757	13	2.2	13	100	0	56	25	0	0	75	0.81
45457490--45457552	12	5.3	12	75	21	53	74	0	23	1	0.90
45457499--45457553	20	2.7	21	83	11	69	72	0	27	0	0.85
45457498--45457544	6	7.3	7	88	7	57	76	0	23	0	0.78
45457498--45457537	15	2.6	16	84	8	55	77	0	22	0	0.77
45457498--45457546	10	5.1	10	78	14	50	75	0	24	0	0.80
45458817--45459106	44	6.7	44	91	3	453	25	17	27	29	1.98
45459310--45459510	99	2.0	100	87	0	287	31	21	21	25	1.98
45459523--45460078	44	12.8	43	70	15	317	29	20	23	26	1.99
45459508--45460167	217	3.0	217	91	0	1034	30	20	22	26	1.99
45460627--45460678	19	2.9	17	81	10	59	40	11	15	32	1.83
45461166--45461190	13	1.9	13	100	0	50	32	0	0	68	0.90
45467523--45468007	242	2.0	243	90	0	765	28	22	18	30	1.97
45474297--45474336	20	2.0	20	85	0	53	25	37	15	22	1.93
45476283--45476364	40	2.0	40	97	0	155	43	2	23	30	1.66
45492508--45492996	47	10.4	47	96	0	861	32	8	29	29	1.87
45495876--45495931	12	4.8	12	78	8	53	53	0	26	19	1.45
45495876--45495936	23	2.6	23	84	7	70	50	0	26	22	1.49
45496699--45496728	14	2.2	13	94	5	51	16	23	30	30	1.96
45509489--45509594	44	2.5	41	75	18	117	34	30	3	31	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45509502--45509594	44	2.1	46	89	4	145	36	29	4	30	1.77
45509576--45509628	16	3.3	16	89	0	79	24	32	3	39	1.73
45520454--45520523	29	2.4	29	92	0	113	24	21	24	30	1.99
45522269--45522307	20	2.0	20	89	0	60	7	33	20	38	1.81
45529426--45529459	16	2.1	16	88	5	50	70	2	2	23	1.15
45539149--45539270	64	1.9	64	91	0	199	28	6	23	40	1.79
45548885--45548933	20	2.5	20	81	15	66	12	24	6	57	1.58
45549137--45549326	50	3.9	50	75	4	165	24	27	20	28	1.99
45555463--45555522	22	2.7	22	97	0	111	31	25	15	28	1.95
45556282--45556360	38	2.1	38	100	0	158	39	26	10	24	1.87
45556693--45556730	14	2.7	14	80	12	51	0	55	0	44	0.99
45556690--45556749	18	3.3	17	77	13	57	0	53	0	46	1.00
45559573--45559959	192	2.0	193	93	1	659	37	10	13	37	1.81
45561320--45561422	52	2.0	52	94	0	179	37	15	15	31	1.89
45569172--45569372	29	6.8	29	80	7	217	37	13	29	19	1.90
45572131--45572304	45	3.9	45	87	0	240	32	21	17	28	1.96
45575216--45575330	40	2.9	40	86	1	160	13	29	20	35	1.92
45575232--45575307	20	3.8	20	71	0	53	11	32	18	36	1.87
45576030--45576066	19	1.9	19	94	0	65	24	27	29	18	1.98
45577059--45577181	42	2.9	42	86	0	165	26	20	24	28	1.99
45583489--45583693	39	5.2	39	93	0	329	31	14	21	32	1.93
45586110--45586299	43	4.4	43	76	7	188	22	26	20	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45586125--45586299	86	2.0	85	85	1	233	23	26	20	29	1.98
45586658--45586697	20	2.0	21	90	5	64	2	47	20	30	1.63
45589527--45589785	16	15.8	16	69	17	158	31	2	20	46	1.63
45589527--45589794	9	31.3	9	71	17	173	31	2	20	45	1.63
45589566--45589794	25	8.9	25	76	13	111	31	2	20	45	1.64
45589601--45589794	34	5.5	34	72	22	130	31	2	20	45	1.65
45589601--45589785	78	2.4	79	82	14	205	30	2	20	45	1.65
45589527--45589788	87	3.1	81	81	12	278	31	2	20	46	1.63
45589590--45589805	25	9.3	23	76	16	114	31	2	19	45	1.63
45589832--45589891	25	2.4	25	83	8	77	33	0	25	41	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211