genome.fa.s14.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  123  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35548338--35548386	20	2.5	20	79	0	62	26	26	16	30	1.97
35551990--35552052	21	3.0	21	83	2	81	33	31	4	30	1.78
35553998--35554023	11	2.4	11	100	0	52	80	0	11	7	0.89
35557160--35557217	22	2.7	21	84	7	80	32	3	18	44	1.67
35557170--35557214	23	2.0	22	91	4	72	31	4	17	46	1.68
35562126--35562179	20	2.7	20	82	0	63	24	20	18	37	1.94
35562126--35562199	30	2.5	30	86	8	98	21	20	18	39	1.93
35562126--35562190	20	3.2	20	71	16	53	23	21	16	38	1.93
35563939--35563996	22	2.7	21	84	7	80	32	3	18	44	1.67
35563949--35563993	23	2.0	22	91	4	72	31	4	17	46	1.68
35569432--35569475	13	3.6	13	85	14	67	75	6	4	13	1.17
35569432--35569474	11	3.7	11	87	6	59	74	6	4	13	1.19
35569513--35569550	18	2.1	19	90	5	60	63	5	7	23	1.42
35569513--35569551	19	2.1	19	90	0	60	64	5	7	23	1.40
35571452--35571493	22	2.0	21	90	4	66	30	4	33	30	1.78
35573183--35573237	15	3.8	14	80	7	65	74	1	21	1	1.01
35574161--35574207	23	2.1	23	84	7	62	51	12	4	31	1.59
35584553--35584737	79	2.3	82	83	7	229	24	27	22	24	2.00
35584534--35584737	40	5.1	40	81	8	229	24	27	22	25	2.00
35586490--35586537	16	2.9	16	79	14	53	77	4	14	4	1.08
35586480--35586537	21	2.9	20	73	16	57	74	3	17	5	1.15
35586528--35586575	25	1.9	25	83	8	62	66	0	20	12	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35590639--35590674	18	1.9	18	88	5	54	25	22	0	52	1.47
35590709--35590747	15	2.6	16	84	12	55	15	20	0	64	1.30
35591772--35591820	11	4.5	11	89	5	64	14	2	4	79	0.97
35593612--35593683	33	2.2	33	84	0	90	34	22	12	30	1.91
35594700--35594846	30	5.2	29	72	16	103	61	4	21	12	1.47
35594751--35594790	18	2.2	18	86	0	53	62	0	27	10	1.27
35594817--35594889	33	2.2	33	83	11	89	54	5	26	13	1.60
35599260--35599297	20	1.9	20	94	0	67	23	26	21	28	1.99
35606943--35607071	50	2.5	52	73	10	122	38	12	13	34	1.83
35612907--35612986	10	7.9	10	79	12	67	71	5	7	16	1.27
35614041--35614082	10	3.7	12	81	18	54	69	2	16	11	1.29
35615141--35615223	42	2.0	42	92	0	139	34	18	7	39	1.78
35637754--35637782	14	2.1	14	100	0	58	6	27	6	58	1.50
35638416--35638459	20	2.2	20	87	0	61	20	31	15	31	1.94
35638423--35638469	20	2.3	20	100	0	94	14	31	14	38	1.87
35640087--35640125	20	2.0	20	94	0	69	28	23	20	28	1.99
35642685--35642748	21	3.2	20	71	13	60	23	9	9	57	1.59
35647844--35647974	50	2.6	52	74	6	124	37	12	16	32	1.87
35652319--35652369	22	2.3	21	86	6	66	35	33	3	27	1.75
35652324--35652386	21	3.0	21	85	2	72	33	30	4	31	1.78
35653773--35653879	53	2.0	53	92	0	178	39	12	14	33	1.84
35655191--35655226	16	2.3	15	86	9	54	75	0	16	8	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35679455--35679637	39	4.6	39	80	9	194	25	27	21	25	2.00
35687377--35687561	79	2.3	82	84	7	238	25	27	22	24	2.00
35687358--35687561	40	5.1	40	82	8	238	25	27	22	25	2.00
35693898--35693944	18	2.6	17	78	21	51	10	25	0	63	1.26
35703073--35703206	66	2.0	65	98	1	259	26	17	17	38	1.92
35704335--35704421	41	2.1	41	97	0	165	32	25	19	22	1.98
35706088--35706220	33	3.7	33	72	17	113	30	27	20	21	1.98
35706124--35706318	102	2.0	96	88	6	291	29	28	21	20	1.98
35709023--35709105	33	2.6	32	79	11	89	51	9	12	26	1.69
35716566--35716736	39	4.3	39	84	6	202	25	21	28	25	1.99
35716513--35716736	79	2.8	79	81	7	222	25	20	28	25	1.99
35716593--35716769	79	2.2	80	82	4	200	25	21	28	24	1.99
35722649--35722869	39	5.6	39	78	8	198	25	21	27	25	2.00
35722649--35722869	79	2.8	77	80	6	221	25	21	27	25	2.00
35722728--35722904	79	2.3	79	81	4	189	25	22	27	24	1.99
35727367--35727589	40	5.6	39	80	7	216	25	21	27	25	1.99
35727447--35727624	79	2.2	80	82	3	200	25	21	28	24	1.99
35731638--35731683	12	3.9	12	86	10	60	13	6	2	78	1.04
35734966--35735004	19	2.1	19	95	0	69	15	15	38	30	1.88
35742243--35742316	19	3.7	20	71	20	57	9	13	4	72	1.23
35742225--35742286	20	2.9	22	79	13	67	9	16	1	72	1.18
35754482--35754524	14	3.3	13	93	6	70	32	11	23	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35756943--35756991	23	2.0	23	84	7	62	22	20	22	34	1.97
35763847--35763928	24	3.5	24	73	15	82	30	13	14	41	1.84
35764073--35764126	23	2.3	23	84	9	65	51	9	3	35	1.52
35767954--35768071	50	2.3	50	81	5	121	33	18	14	33	1.91
35771720--35771745	13	2.0	13	100	0	52	15	15	7	61	1.55
35775727--35775768	17	2.4	18	80	7	52	57	4	23	14	1.56
35787289--35787400	23	4.8	23	68	13	68	21	3	30	44	1.69
35788348--35788392	20	2.2	20	84	7	56	51	11	6	31	1.63
35790760--35790845	43	2.0	43	95	0	154	32	16	18	32	1.93
35791895--35791932	18	2.1	19	90	5	60	68	0	23	7	1.16
35797174--35797242	20	3.5	20	78	7	86	24	18	31	24	1.98
35799033--35799166	6	22.0	6	72	4	90	7	17	2	72	1.20
35804626--35804670	20	2.3	19	85	11	56	40	11	24	24	1.87
35807180--35807296	40	2.6	45	76	16	127	47	10	10	31	1.71
35807203--35807281	40	2.0	40	94	0	140	45	12	11	30	1.77
35809307--35809380	30	2.5	29	79	16	73	13	20	1	64	1.35
35812368--35812549	28	6.5	28	94	1	294	26	12	27	33	1.92
35820499--35820680	28	6.5	28	92	1	285	27	12	26	33	1.92
35822375--35822434	20	2.8	22	75	12	61	55	13	3	28	1.54
35833097--35833179	36	2.3	36	79	4	87	8	22	2	66	1.31
35833123--35833190	33	2.1	33	81	10	77	11	17	1	69	1.26
35834293--35834350	10	5.3	11	86	13	84	17	0	8	74	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35834293--35834350	21	2.6	22	94	5	100	17	0	8	74	1.06
35834293--35834339	10	4.6	10	94	5	85	17	0	8	74	1.05
35838329--35838380	23	2.3	22	75	21	54	9	23	1	65	1.32
35842227--35842353	40	3.2	40	93	1	218	45	14	8	30	1.76
35848168--35848220	22	2.4	22	100	0	106	33	16	15	33	1.90
35848996--35849030	11	3.2	11	91	0	52	71	5	2	20	1.19
35851643--35851677	11	3.2	11	91	0	52	71	5	2	20	1.19
35856131--35856183	22	2.4	22	100	0	106	33	16	15	33	1.90
35856959--35856993	11	3.2	11	91	0	52	71	5	2	20	1.19
35859609--35859646	12	3.2	12	100	0	76	76	7	0	15	1.01
35869201--35869258	29	2.0	29	96	0	107	36	24	6	32	1.82
35873244--35873429	40	4.7	40	88	5	252	24	22	27	26	2.00
35873297--35873462	80	2.1	79	86	5	228	25	20	27	26	1.99
35881287--35881466	80	2.2	81	81	7	199	26	21	26	25	2.00
35881287--35881432	40	3.7	40	86	5	197	23	22	27	26	2.00
35881287--35881466	40	4.5	40	82	6	179	26	21	26	25	2.00
35883731--35883769	18	2.2	18	90	9	62	71	2	20	5	1.17
35885540--35885611	33	2.1	34	89	2	110	38	6	12	41	1.70
35892701--35892725	13	1.9	13	100	0	50	48	0	8	44	1.32
35899794--35899825	16	2.0	16	93	0	55	43	21	12	21	1.86
35901921--35901971	14	3.6	14	80	15	68	74	1	19	3	1.07
35912625--35912742	50	2.3	52	84	5	152	38	12	16	32	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35916802--35916842	13	3.2	13	86	10	57	56	2	12	29	1.49
35922313--35922402	45	2.0	45	93	0	153	33	24	17	24	1.96
35923521--35923573	23	2.3	23	90	0	79	26	11	22	39	1.88
35927998--35928065	27	2.5	27	90	4	102	39	5	1	52	1.34
35928066--35928113	7	7.0	7	85	7	55	85	8	2	4	0.80
35928067--35928116	26	1.9	26	91	0	82	88	6	2	4	0.70
35928483--35928520	3	12.7	3	100	0	76	34	0	0	65	0.93
35928486--35928630	12	11.8	12	67	15	55	35	0	7	55	1.33
35929249--35929277	15	1.9	15	100	0	58	27	6	41	24	1.80
35929257--35929291	18	1.9	18	88	0	52	31	5	45	17	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211