genome.fa.s14.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  131  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38374314--38374526	44	4.8	44	94	0	363	32	23	23	21	1.98
38374314--38374581	132	2.0	132	82	4	326	32	22	24	20	1.98
38374513--38374880	129	2.9	128	92	1	603	32	19	25	22	1.97
38374513--38374888	128	2.9	125	90	4	565	32	19	24	23	1.98
38374874--38375533	217	3.0	217	85	5	779	30	18	23	28	1.97
38374921--38375202	44	6.5	44	71	10	166	26	19	25	28	1.99
38375331--38375443	44	2.6	44	85	5	149	27	20	23	29	1.99
38375137--38375631	233	2.1	233	92	1	814	31	17	21	29	1.96
38377113--38377169	25	2.4	24	80	8	62	29	5	1	63	1.27
38377119--38377156	19	2.1	18	90	5	58	26	5	2	65	1.27
38377121--38377168	19	2.5	19	83	6	53	29	6	2	62	1.31
38385366--38385570	27	7.6	27	83	3	223	26	15	29	29	1.96
38385367--38385570	54	3.8	54	84	3	257	25	15	29	29	1.96
38389662--38389756	35	2.7	34	87	4	136	18	9	28	43	1.82
38395210--38395238	10	2.9	10	100	0	58	72	6	10	10	1.28
38399565--38399589	6	4.2	6	100	0	50	84	0	0	16	0.63
38400822--38400858	17	2.1	18	90	5	58	29	32	10	27	1.90
38404799--38404855	21	2.7	21	88	0	78	29	36	14	19	1.91
38404802--38404839	14	2.7	14	83	0	58	34	42	10	13	1.78
38406585--38406622	19	2.0	20	84	5	51	34	7	2	55	1.43
38406974--38407049	36	2.1	36	83	9	93	46	0	19	34	1.51
38407002--38407059	17	3.3	17	71	17	55	39	0	24	36	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38406989--38407062	36	2.0	37	94	2	132	39	0	22	37	1.55
38407050--38407089	20	2.0	21	95	5	73	37	2	25	35	1.69
38407051--38407095	21	2.2	20	88	4	63	37	2	22	37	1.67
38407159--38407287	40	3.3	40	69	14	117	21	20	20	37	1.95
38407122--38407336	75	2.9	75	88	2	308	22	20	23	33	1.97
38407140--38407336	35	5.3	35	69	14	128	22	20	23	32	1.98
38420173--38420444	47	5.7	47	91	2	411	32	9	30	27	1.88
38420562--38420675	37	3.1	37	92	2	178	22	18	32	26	1.97
38422537--38422639	43	2.4	43	100	0	206	22	15	35	26	1.94
38422621--38422694	29	2.6	29	89	4	105	25	16	32	25	1.96
38423016--38423223	79	2.6	79	82	7	228	24	22	26	25	2.00
38423004--38423223	40	5.6	40	84	7	245	24	22	27	25	2.00
38426592--38426861	47	5.7	47	93	0	425	32	8	30	28	1.87
38426980--38427095	37	3.1	37	92	0	187	23	18	32	25	1.97
38428968--38429071	43	2.4	43	98	1	199	22	15	35	26	1.94
38429052--38429126	29	2.6	29	87	6	98	25	16	32	26	1.96
38429478--38429663	40	4.6	40	87	4	232	25	21	26	26	1.99
38433019--38433334	47	6.7	47	93	1	510	32	8	30	28	1.87
38433019--38433334	140	2.2	141	92	1	519	32	8	30	28	1.87
38433452--38433530	37	2.1	37	90	0	122	24	18	31	25	1.98
38436621--38436757	63	2.2	63	85	1	175	46	16	12	24	1.81
38455621--38456130	264	1.9	264	86	2	720	26	27	23	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38455621--38456107	88	5.5	88	87	0	650	27	28	23	20	1.99
38456107--38456483	44	8.7	44	79	5	356	27	16	25	29	1.97
38457528--38457566	19	2.0	21	85	10	55	15	10	5	69	1.34
38457789--38457822	3	11.3	3	87	12	52	35	0	0	64	0.94
38457789--38457823	18	2.0	17	94	5	61	37	0	0	62	0.95
38459703--38459994	50	5.9	50	88	2	383	21	29	21	27	1.99
38460330--38460389	29	2.1	29	87	0	84	35	23	8	33	1.85
38464277--38464484	45	4.6	44	76	9	170	40	15	19	24	1.91
38465633--38465671	18	2.2	17	90	9	60	28	10	0	61	1.28
38465633--38465681	19	2.5	19	77	9	55	28	10	2	59	1.41
38466268--38466335	34	2.0	34	100	0	136	29	14	20	35	1.93
38469323--38469505	78	2.3	81	82	6	223	25	22	27	24	2.00
38469322--38469505	40	4.7	40	82	8	216	25	22	27	25	2.00
38469375--38469538	79	2.1	77	82	5	195	26	20	27	25	1.99
38472260--38472338	37	2.1	37	86	4	106	25	29	18	26	1.98
38472457--38473189	47	15.4	47	93	2	1178	29	30	8	31	1.87
38472994--38473189	103	1.9	103	94	0	347	30	29	7	32	1.85
38479433--38479513	40	2.0	40	85	0	108	14	40	18	25	1.89
38486376--38486511	45	2.9	46	84	11	170	29	29	16	24	1.97
38489275--38489356	42	2.0	42	82	4	103	30	23	14	31	1.94
38492150--38492181	16	2.0	16	93	0	55	25	15	0	59	1.36
38492408--38492598	51	3.8	51	76	15	216	31	26	16	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38492406--38492590	101	1.8	102	91	3	311	32	25	17	24	1.97
38492402--38492619	101	2.1	103	80	8	268	30	27	16	26	1.96
38495315--38495363	20	2.5	19	78	15	55	44	8	8	38	1.64
38496173--38496234	31	2.0	31	96	0	115	40	14	6	38	1.72
38500536--38500730	42	4.7	42	80	11	206	30	24	15	29	1.96
38524730--38524765	18	2.1	18	89	5	56	13	16	0	69	1.19
38524801--38524853	21	2.4	24	76	20	62	5	16	5	71	1.25
38525893--38525940	13	4.0	12	82	15	55	22	8	4	64	1.38
38530146--38530204	23	2.6	23	84	10	84	47	13	16	22	1.82
38534549--38534588	11	3.3	12	82	10	55	35	0	0	65	0.93
38545591--38545628	20	1.9	20	88	0	58	50	13	7	28	1.69
38546653--38546685	17	1.9	17	93	0	57	36	24	24	15	1.93
38548312--38548336	13	1.9	13	100	0	50	84	0	0	16	0.63
38549688--38549763	37	2.1	37	92	4	129	40	2	15	40	1.61
38550517--38550568	26	2.0	26	100	0	104	42	15	11	30	1.82
38551503--38551567	34	1.9	34	84	6	87	64	3	3	29	1.23
38551518--38551600	44	1.9	43	83	11	107	59	1	2	37	1.19
38551529--38551620	45	2.1	43	80	8	96	59	2	3	34	1.25
38552157--38552400	10	25.8	9	66	18	79	32	3	3	61	1.28
38552186--38552227	19	2.2	20	86	4	59	21	4	0	73	1.01
38552327--38552374	18	2.9	16	82	17	62	35	2	0	62	1.07
38552305--38552407	27	4.0	26	73	15	97	32	0	2	64	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38552311--38552400	19	4.9	19	67	21	57	34	1	2	62	1.15
38552386--38552431	20	2.2	21	85	11	60	26	0	0	73	0.83
38553632--38553671	19	2.1	19	95	0	71	37	7	20	35	1.81
38553967--38554073	27	4.1	27	75	2	85	19	17	25	37	1.94
38564799--38564823	12	2.1	12	100	0	50	24	36	24	16	1.94
38564957--38565050	9	10.4	9	78	13	95	40	24	8	26	1.84
38564957--38565050	27	3.5	27	86	2	136	40	24	8	26	1.84
38565087--38565130	20	2.2	20	84	8	54	25	0	6	68	1.14
38566583--38566652	29	2.3	29	83	9	79	28	12	10	48	1.74
38566645--38567056	203	2.0	204	97	0	781	24	15	10	49	1.77
38573499--38573537	20	2.0	20	85	10	53	43	10	10	35	1.73
38576955--38577138	40	4.6	40	78	10	198	25	27	22	25	2.00
38576922--38577139	79	2.8	81	79	11	229	25	27	21	26	1.99
38582497--38582561	27	2.4	27	86	0	94	29	30	18	21	1.97
38587998--38588036	14	2.8	14	88	0	60	58	0	2	38	1.12
38600840--38600908	36	1.9	36	93	0	120	24	30	13	31	1.93
38611034--38611065	11	2.6	13	90	9	50	37	12	12	37	1.81
38612262--38612649	51	7.7	50	82	5	458	29	15	25	29	1.96
38612418--38612500	26	3.2	26	67	21	75	28	13	26	31	1.94
38612262--38612656	152	2.6	152	92	1	632	29	15	24	29	1.96
38617747--38617861	55	2.1	55	95	0	203	27	5	22	44	1.74
38619248--38619384	50	2.7	50	81	0	166	29	23	26	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38619592--38619641	20	2.5	20	81	15	68	58	4	22	16	1.55
38622406--38622476	36	2.0	36	94	0	124	35	18	25	21	1.95
38627548--38627589	20	2.1	20	90	0	66	28	9	33	28	1.88
38631444--38631491	25	1.9	25	95	0	87	29	12	18	39	1.88
38635204--38635245	6	6.7	6	84	10	57	78	2	16	2	0.96
38647284--38647421	51	2.7	51	97	0	258	30	30	16	22	1.96
38654059--38654250	19	10.1	19	71	6	113	38	20	18	23	1.94
38661720--38661767	18	2.9	17	79	11	55	12	14	0	72	1.11
38676055--38676120	20	3.3	20	76	0	60	19	16	21	42	1.89
38676063--38676127	20	3.2	20	73	0	67	16	18	23	41	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211