genome.fa.s14.2.7.7.80.10.50.1000.186.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  186  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55119376--55119481	49	2.1	49	80	16	121	35	2	2	58	1.27
55121452--55121484	17	1.9	18	88	11	52	39	0	0	60	0.97
55129397--55129441	19	2.2	20	84	7	56	71	0	2	26	0.98
55129415--55129457	21	2.0	23	86	9	63	67	2	2	27	1.15
55131162--55131197	16	2.2	17	90	5	56	25	2	5	66	1.27
55132160--55132356	98	2.0	98	97	0	376	27	14	14	43	1.84
55132571--55132684	55	2.1	55	93	1	194	36	16	12	34	1.86
55138300--55138324	8	3.1	8	100	0	50	52	12	0	36	1.39
55147403--55147457	24	2.3	25	81	6	69	36	0	3	60	1.15
55148119--55148175	29	2.0	28	83	10	71	24	10	12	52	1.70
55154855--55154896	20	2.1	20	86	0	57	47	0	7	45	1.30
55156889--55156925	13	2.7	14	84	16	51	67	5	2	24	1.25
55157457--55157496	6	6.7	6	91	0	53	75	0	0	25	0.81
55157941--55158036	19	4.7	21	79	10	74	40	15	6	37	1.73
55157941--55157998	22	2.6	22	81	7	64	41	17	5	36	1.72
55157977--55158049	19	3.8	19	92	0	128	36	15	9	38	1.80
55161723--55162006	144	2.0	144	95	0	505	35	17	9	38	1.81
55168269--55168309	20	2.0	21	86	9	59	34	4	17	43	1.70
55170267--55170392	42	3.0	42	85	2	146	17	26	16	38	1.91
55170299--55170413	42	2.7	42	85	2	115	19	24	14	41	1.89
55170281--55170435	21	7.5	21	71	4	82	18	23	16	41	1.90
55174261--55174318	3	19.3	3	74	0	53	31	1	5	62	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55180116--55180156	18	2.1	19	86	13	57	24	4	2	68	1.22
55180116--55180157	19	2.3	18	84	12	50	26	4	2	66	1.23
55180224--55180272	19	2.5	20	80	9	57	38	2	0	59	1.09
55188184--55188235	23	2.2	23	83	13	61	28	5	1	63	1.28
55199880--55199925	11	4.3	11	76	13	51	71	2	2	23	1.08
55199886--55199934	22	2.2	23	92	3	82	69	6	2	22	1.21
55199907--55199978	36	2.0	36	81	5	83	61	13	0	25	1.33
55201823--55201892	38	1.9	37	83	11	92	62	2	7	27	1.35
55210033--55210078	23	2.0	23	86	0	65	34	28	26	10	1.90
55214538--55214583	23	2.0	23	86	0	65	34	28	26	10	1.90
55217206--55217355	41	3.6	41	93	0	246	25	27	18	28	1.98
55219903--55219936	7	4.9	7	100	0	68	29	26	0	44	1.55
55220840--55220893	20	2.7	20	83	13	67	38	0	3	57	1.17
55238354--55238413	24	2.5	24	86	5	86	26	40	11	21	1.88
55245228--55245253	3	8.7	3	100	0	52	69	0	30	0	0.89
55253355--55253435	31	2.7	30	80	5	83	34	6	11	48	1.64
55253382--55253444	29	2.1	29	82	8	74	31	9	12	46	1.74
55259264--55259330	17	3.9	17	92	0	116	23	25	5	44	1.76
55261868--55261943	19	3.9	19	71	10	73	31	19	21	27	1.97
55262266--55262302	18	2.1	18	100	0	74	27	18	16	37	1.92
55267631--55267669	18	2.2	17	86	13	53	33	0	20	46	1.51
55267896--55268016	23	5.3	23	90	4	190	17	19	27	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55271669--55271706	18	2.2	18	86	9	53	68	2	7	21	1.28
55278525--55278584	27	2.2	27	85	5	86	31	21	15	31	1.94
55281451--55281532	4	20.8	4	71	24	50	74	0	4	20	1.00
55281452--55281532	7	11.9	7	75	20	66	74	0	4	20	1.01
55284601--55284625	8	3.1	8	100	0	50	88	0	0	12	0.53
55285476--55285511	15	2.5	14	86	8	54	44	8	0	47	1.33
55287150--55287213	31	2.1	31	100	0	128	29	23	3	43	1.69
55288953--55289013	12	5.1	12	75	0	59	24	11	9	54	1.66
55288947--55289010	18	3.6	18	83	8	85	25	12	7	54	1.64
55289029--55289096	6	11.3	6	82	0	55	22	5	16	55	1.62
55289060--55289102	12	3.6	12	87	0	50	18	0	25	55	1.42
55289307--55289423	61	1.9	61	89	0	180	24	8	23	42	1.82
55291302--55291369	28	2.5	28	83	4	86	23	7	17	51	1.70
55292771--55292833	20	3.3	20	65	17	62	49	25	6	19	1.71
55292767--55292837	36	2.0	36	100	0	142	47	25	8	18	1.76
55296076--55296161	42	2.1	41	93	2	145	20	18	19	40	1.91
55299112--55299353	108	2.3	107	81	8	269	42	7	11	38	1.69
55299787--55299872	43	2.0	43	100	0	172	41	32	2	23	1.67
55302429--55302504	37	2.0	38	90	7	120	67	0	1	31	0.99
55316492--55316615	24	5.0	25	75	14	96	33	19	26	20	1.97
55316722--55316784	25	2.6	25	76	2	65	34	17	26	20	1.95
55318894--55318969	26	2.9	26	86	7	109	30	15	11	42	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55320811--55320867	10	5.2	11	74	21	57	21	35	0	43	1.52
55320828--55320880	22	2.4	22	96	3	97	26	32	0	41	1.56
55322064--55322102	7	5.6	7	100	0	78	28	0	12	58	1.34
55322751--55322785	18	1.9	18	94	0	61	25	31	8	34	1.86
55326035--55326093	22	2.8	22	85	10	70	38	0	1	59	1.08
55326032--55326093	5	12.2	5	80	13	65	38	0	1	59	1.07
55328934--55328964	7	4.4	7	100	0	62	58	0	12	29	1.35
55349300--55349337	20	1.9	20	94	0	67	36	26	26	10	1.89
55350124--55350178	21	2.8	19	84	13	60	67	0	9	23	1.19
55351100--55351220	39	3.0	40	84	7	149	15	18	26	39	1.90
55351115--55351230	40	2.9	41	84	6	141	13	18	28	39	1.89
55354190--55354236	22	2.1	22	84	7	60	36	2	4	57	1.30
55354278--55354344	16	4.5	16	67	17	54	50	10	1	37	1.46
55354307--55354357	16	2.8	19	67	27	56	49	13	0	37	1.43
55354285--55354451	86	2.0	84	83	8	214	47	8	5	38	1.57
55354488--55354549	32	2.1	29	82	14	74	40	6	4	48	1.50
55354496--55354552	16	3.6	16	87	0	87	43	5	3	47	1.43
55354525--55354587	22	2.7	23	90	4	92	47	1	1	49	1.20
55354636--55354664	6	5.0	6	95	4	51	0	34	51	13	1.42
55366337--55366419	11	7.5	10	75	15	67	4	2	30	62	1.28
55366337--55366418	21	3.7	22	82	9	94	4	2	29	63	1.28
55366576--55366660	41	2.1	40	84	2	107	20	2	10	67	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55366986--55367028	22	2.0	22	81	9	52	30	6	4	58	1.45
55386704--55386747	17	2.8	16	93	6	72	77	15	0	6	0.97
55396556--55396588	15	2.2	15	100	0	66	42	6	12	39	1.67
55406784--55406832	25	2.0	24	96	4	89	53	4	18	24	1.62
55424244--55424584	51	6.7	50	78	5	301	30	15	25	28	1.96
55424240--55424575	102	3.3	101	86	2	426	30	15	25	28	1.96
55427448--55427744	50	5.8	50	81	3	292	22	27	21	27	1.99
55432029--55432128	50	2.0	50	98	0	191	38	15	18	29	1.90
55433631--55433722	29	3.2	29	80	6	89	20	29	22	27	1.99
55434435--55434542	39	2.7	39	82	4	101	32	16	21	29	1.95
55437533--55437568	16	2.2	16	95	0	63	27	0	33	38	1.57
55437804--55437838	18	2.0	17	88	5	52	54	0	0	45	0.99
55437691--55438006	156	2.0	157	95	0	562	43	3	5	47	1.44
55438080--55438114	18	2.0	17	88	5	52	54	0	0	45	0.99
55438179--55438230	15	3.6	15	80	12	56	53	1	0	44	1.11
55437943--55438348	120	3.4	120	95	2	701	48	5	2	43	1.41
55438386--55438579	92	2.1	92	84	5	250	46	5	3	44	1.44
55442080--55442152	23	3.3	23	66	11	71	47	4	2	45	1.36
55443023--55443244	52	4.0	52	76	17	241	43	21	9	25	1.82
55445558--55445637	30	2.6	30	80	11	83	48	1	5	45	1.32
55467750--55467901	27	5.6	27	78	9	155	26	15	27	30	1.96
55467832--55467898	29	2.4	28	80	11	75	23	13	26	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55475860--55476010	27	5.6	27	81	4	160	27	15	27	29	1.96
55475860--55476010	55	2.8	55	80	4	171	27	15	27	29	1.96
55475861--55476010	82	1.8	81	85	4	212	26	15	28	30	1.96
55484422--55484501	41	2.0	41	97	0	151	17	32	16	33	1.92
55488662--55488700	13	3.1	13	77	7	53	76	5	0	17	0.96
55490289--55490338	10	4.6	11	87	7	68	38	4	0	58	1.17
55490291--55490333	23	1.9	23	90	4	70	41	4	0	53	1.21
55499064--55499102	20	1.9	21	84	5	53	61	20	17	0	1.34
55501499--55501524	3	8.7	3	100	0	52	34	0	0	65	0.93
55513219--55513246	1	28.0	1	100	0	56	100	0	0	0	0.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211