genome.fa.s14.2.7.7.80.10.50.1000.192.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  192  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56801801--56804482	68	39.9	67	74	16	1766	25	0	25	48	1.55
56801875--56801988	60	1.9	59	90	1	183	30	0	21	48	1.50
56801934--56804483	45	56.7	44	78	12	1781	25	0	25	48	1.55
56803544--56803611	30	2.3	30	87	7	95	23	0	27	48	1.51
56803649--56803678	15	2.0	15	100	0	60	20	0	26	53	1.46
56803626--56803710	38	2.2	38	93	0	143	22	0	28	49	1.50
56804375--56804480	23	4.7	22	69	21	85	24	0	27	47	1.58
56804291--56804418	38	3.2	38	80	14	150	25	0	25	48	1.57
56803866--56804493	113	5.7	105	76	17	419	25	0	27	47	1.55
56804526--56804573	25	1.9	25	100	0	96	39	14	0	45	1.45
56804517--56804573	25	2.3	26	90	3	82	45	12	0	42	1.41
56806865--56806895	11	2.8	11	90	0	53	51	6	22	19	1.69
56806899--56806938	11	3.6	11	90	6	55	45	0	32	22	1.53
56807055--56807153	50	2.0	51	97	2	191	23	29	31	16	1.96
56808303--56808346	19	2.3	19	84	7	54	72	6	6	13	1.25
56808981--56809078	3	32.7	3	97	0	187	67	0	32	0	0.91
56810969--56810993	12	2.1	12	100	0	50	32	24	28	16	1.96
56815873--56815966	3	31.3	3	97	0	179	68	0	31	0	0.90
56817082--56817150	21	3.5	20	77	13	72	11	13	39	36	1.80
56817792--56817843	9	5.6	9	91	8	86	38	28	9	23	1.86
56817792--56817840	20	2.5	20	93	6	84	38	30	10	20	1.86
56818038--56818066	14	2.1	14	100	0	58	41	20	6	31	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56819800--56819854	28	2.0	28	92	0	92	45	16	7	30	1.74
56819800--56819861	28	2.3	27	86	8	83	50	14	6	29	1.68
56822123--56822312	6	30.7	6	70	6	92	56	12	8	22	1.62
56822147--56822235	36	2.5	36	86	0	133	57	13	6	22	1.60
56822147--56822312	36	4.4	36	72	11	109	55	12	9	22	1.65
56830832--56830856	8	3.1	8	100	0	50	16	0	0	84	0.63
56831136--56831177	13	3.2	13	80	12	59	59	9	0	30	1.29
56831745--56831831	21	4.1	21	75	7	86	37	22	19	19	1.94
56832104--56832135	16	1.9	17	93	6	57	25	21	0	53	1.46
56834917--56834996	41	2.0	40	87	2	115	31	27	17	23	1.97
56835117--56835507	31	12.7	31	87	2	513	43	16	9	30	1.80
56835117--56835507	123	3.2	122	84	3	523	43	16	9	30	1.80
56835141--56835517	185	2.0	185	90	1	585	43	16	9	30	1.80
56845114--56845190	14	5.0	15	71	20	52	42	14	9	33	1.77
56845130--56845169	20	2.0	20	90	0	62	50	12	10	27	1.72
56845118--56845184	34	1.9	35	90	3	109	46	13	8	31	1.74
56845167--56845198	15	2.1	16	88	11	50	43	9	12	34	1.75
56845512--56845572	31	1.9	32	83	3	79	32	6	16	44	1.73
56846632--56846691	31	1.9	31	86	6	86	45	10	8	36	1.68
56850269--56850294	2	13.0	2	100	0	52	50	0	0	50	1.00
56856108--56856424	114	2.8	114	85	3	435	23	23	26	26	2.00
56856330--56856495	73	2.3	73	86	2	226	27	21	22	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56856221--56856620	187	2.1	187	89	0	611	26	23	24	26	2.00
56856408--56856995	114	5.1	114	86	3	761	25	22	23	28	1.99
56856177--56856723	301	1.8	301	88	2	848	25	22	24	27	2.00
56856403--56856995	229	2.6	228	87	4	818	25	22	24	28	1.99
56857627--56857656	7	4.3	7	95	0	51	13	0	43	43	1.43
56857627--56857666	14	2.9	14	88	0	53	12	0	50	37	1.41
56857692--56857740	14	3.6	14	71	18	50	22	0	34	42	1.54
56858222--56858302	24	3.2	24	78	13	99	44	0	9	45	1.37
56858219--56858302	28	3.1	28	70	13	86	46	0	9	44	1.36
56858350--56859065	365	2.0	365	93	0	1225	30	14	20	34	1.93
56859727--56859764	18	2.1	18	100	0	76	26	10	15	47	1.78
56860566--56860599	17	2.1	17	94	5	61	44	11	0	44	1.40
56860601--56860739	13	10.5	13	70	9	75	41	10	2	46	1.52
56860591--56860739	53	2.8	52	88	2	217	41	10	2	45	1.52
56860671--56860748	40	2.0	40	94	0	138	41	10	2	46	1.51
56860943--56860986	23	1.9	23	95	0	79	43	18	0	38	1.50
56862622--56862719	21	4.7	21	88	0	124	37	18	40	3	1.66
56862684--56862729	21	2.2	21	88	0	65	36	17	41	4	1.69
56863116--56863343	42	5.3	43	80	8	234	25	19	21	32	1.97
56863178--56863342	85	2.0	85	90	1	260	26	21	21	30	1.98
56863178--56863344	42	4.0	42	88	3	246	25	20	21	31	1.98
56864980--56865021	19	2.3	19	88	8	61	35	9	21	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56867669--56867713	19	2.4	19	85	7	56	26	24	11	37	1.89
56870122--56870212	41	2.2	41	92	0	146	28	19	23	28	1.98
56875005--56875414	44	9.2	44	76	8	339	31	18	22	27	1.97
56875003--56875414	177	2.3	178	90	2	639	31	19	22	26	1.98
56875791--56875944	44	3.5	44	79	5	161	29	19	21	29	1.98
56875421--56875905	225	2.2	223	81	5	575	32	18	21	28	1.96
56875987--56876264	89	3.1	88	83	4	335	29	23	23	24	1.99
56876044--56876179	44	3.1	43	67	17	107	30	24	22	22	1.99
56878480--56878848	131	2.8	132	89	0	578	29	19	25	25	1.98
56879170--56879200	14	2.2	14	94	0	53	77	9	0	12	0.99
56879311--56879366	19	2.9	19	94	0	85	37	10	17	33	1.85
56881069--56881111	18	2.2	19	84	12	52	44	11	9	34	1.73
56881136--56881173	20	1.9	20	94	0	67	39	13	10	36	1.79
56882198--56882241	23	1.9	23	90	0	70	50	6	22	20	1.72
56883178--56883380	101	2.0	101	100	0	406	32	14	18	33	1.92
56897424--56897454	15	2.1	15	93	0	53	45	0	9	45	1.36
56904505--56904547	18	2.4	18	80	0	50	41	0	41	16	1.48
56904602--56904689	27	3.2	27	81	1	104	23	18	38	19	1.93
56908336--56908387	19	2.7	19	78	3	59	30	11	9	48	1.72
56908427--56908477	21	2.5	21	87	6	70	31	17	17	33	1.94
56910355--56910697	50	6.8	51	81	6	367	28	14	26	30	1.95
56910355--56910697	102	3.4	101	88	2	485	28	14	26	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56934360--56934446	41	2.1	41	97	0	165	45	8	3	42	1.50
56934947--56934999	19	2.7	18	78	21	54	35	7	13	43	1.72
56938453--56938511	25	2.4	25	88	0	82	32	23	20	23	1.98
56940813--56940857	21	2.1	22	91	4	74	40	2	0	57	1.11
56941904--56941979	38	2.1	36	90	5	116	31	30	7	30	1.86
56943226--56943261	9	3.9	9	85	7	54	80	0	19	0	0.71
56943228--56943265	15	2.5	15	91	4	58	81	0	18	0	0.69
56943226--56943266	19	2.1	20	90	4	66	78	0	21	0	0.76
56943234--56943274	7	6.1	7	82	5	50	75	0	24	0	0.80
56951928--56952022	46	2.1	46	95	0	172	40	22	2	35	1.66
56956512--56956588	22	3.4	22	67	19	68	36	25	2	35	1.70
56956499--56956589	46	2.0	46	100	0	182	39	24	2	34	1.67
56963609--56963849	33	6.7	33	75	17	214	32	26	20	20	1.97
56963608--56963882	108	2.6	108	90	4	427	31	26	20	21	1.98
56963828--56963881	27	2.0	28	96	3	101	29	29	22	18	1.97
56970697--56970900	102	2.0	101	93	2	347	31	28	19	20	1.97
56970803--56970939	42	3.5	41	74	17	155	33	27	17	21	1.96
56970801--56970971	75	2.3	75	94	0	306	33	26	19	19	1.96
56970667--56971001	177	1.9	177	93	1	573	31	27	19	20	1.97
56971787--56971948	79	2.1	79	89	0	243	30	12	24	32	1.92
56977982--56978018	18	2.1	18	100	0	74	43	18	0	37	1.51
56978181--56978231	14	3.7	14	71	12	52	27	19	13	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56988392--56988455	20	3.2	20	93	2	101	50	6	1	42	1.37
56988642--56988707	6	10.8	6	73	15	55	51	4	9	34	1.54
56988639--56988707	17	3.8	18	79	12	70	52	4	8	34	1.52
56988786--56988828	20	2.2	20	87	8	61	69	4	4	20	1.25
56991157--56991241	41	2.1	41	100	0	170	31	7	9	51	1.61
56996422--56996481	14	4.2	14	79	10	52	68	0	8	23	1.16
56996492--56996526	18	1.9	18	100	0	70	62	0	2	34	1.10
56997829--56997952	44	2.8	44	82	4	151	30	20	17	30	1.96
56997838--56998089	137	1.9	136	81	8	313	30	19	18	31	1.96
56998013--56998149	44	3.1	44	75	5	114	29	19	20	30	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211