genome.fa.s14.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  122  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34669042--34669079	13	2.8	13	82	17	51	73	0	18	7	1.06
34669043--34669093	21	2.4	21	74	6	50	74	1	17	5	1.11
34669096--34669158	33	1.9	33	84	12	85	53	6	26	12	1.62
34670927--34670999	29	2.5	30	82	13	89	21	20	17	39	1.92
34680002--34680031	14	2.1	14	93	0	51	60	16	0	23	1.36
34680080--34680121	20	2.0	21	90	4	68	30	16	28	23	1.96
34682980--34683030	25	2.2	24	82	10	61	43	11	5	39	1.66
34694271--34694322	23	2.3	22	75	21	54	9	23	1	65	1.32
34698023--34698075	23	2.4	22	76	20	56	9	18	1	69	1.25
34702787--34702843	11	5.5	10	73	22	55	77	1	17	3	1.00
34702787--34702843	5	11.0	5	77	17	55	77	1	17	3	1.00
34702787--34702843	16	3.7	14	80	17	60	77	1	17	3	1.00
34702920--34702978	30	2.0	30	82	0	73	61	0	25	13	1.33
34703250--34703294	14	3.2	14	83	0	54	37	6	33	22	1.80
34705556--34705638	30	2.7	30	81	9	89	13	21	1	63	1.35
34705589--34705644	18	3.1	18	76	5	51	7	19	3	69	1.27
34705614--34705638	12	2.1	12	100	0	50	8	16	0	76	1.02
34705707--34705763	5	11.0	5	75	20	55	3	17	1	77	1.00
34705707--34705763	16	3.7	14	82	15	60	3	17	1	77	1.00
34705707--34705774	21	3.2	21	76	15	61	2	17	2	76	1.04
34712575--34712642	21	3.2	20	79	8	64	76	2	16	4	1.07
34712597--34712642	16	3.1	14	82	14	56	76	4	17	2	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34712711--34712735	12	2.1	12	100	0	50	76	0	16	8	1.02
34712705--34712760	18	3.1	18	76	5	51	69	1	19	8	1.24
34712711--34712792	30	2.7	31	81	5	105	64	1	21	12	1.33
34715019--34715105	13	6.5	13	77	15	72	72	5	8	13	1.26
34715068--34715136	30	2.3	30	85	9	88	75	5	14	4	1.15
34722487--34722583	30	3.2	30	73	2	97	28	25	15	29	1.96
34722557--34722603	19	2.5	19	100	0	94	29	21	19	29	1.97
34727111--34727213	30	3.5	30	71	11	95	27	23	16	33	1.96
34729422--34729518	30	3.2	30	68	8	81	26	28	15	28	1.96
34730639--34730704	20	3.2	20	74	6	62	19	27	18	34	1.95
34732049--34732140	45	2.0	45	100	0	184	44	13	16	26	1.84
34734075--34734106	12	2.6	12	95	5	55	25	6	3	65	1.31
34750423--34750599	27	6.6	27	84	2	203	29	28	15	27	1.96
34750444--34750598	81	1.9	81	88	2	231	29	28	15	27	1.96
34753168--34753209	17	2.7	15	79	20	50	11	19	2	66	1.34
34753265--34753349	11	7.7	11	72	15	52	12	9	3	74	1.19
34753264--34753294	12	2.6	12	100	0	62	12	6	0	80	0.89
34754841--34754887	20	2.3	20	81	0	58	23	12	34	29	1.92
34755391--34755429	19	2.1	19	85	4	53	69	2	23	5	1.21
34758815--34758855	15	2.7	16	74	11	50	7	26	0	65	1.18
34759013--34759051	15	2.4	15	87	12	51	10	20	2	66	1.33
34759951--34760017	27	2.4	28	87	9	93	11	8	2	76	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34760063--34760120	13	4.5	13	91	0	98	15	1	5	77	1.02
34774309--34774351	11	3.7	11	87	6	59	13	6	0	79	0.93
34774308--34774354	12	3.9	12	86	8	69	14	8	0	76	1.01
34776625--34776664	21	1.9	21	84	0	53	70	7	20	2	1.24
34779242--34779294	23	2.4	22	76	20	56	9	18	1	69	1.25
34780576--34780617	18	2.3	18	84	8	50	14	7	11	66	1.43
34789452--34790610	88	13.2	88	84	3	1334	27	24	24	22	2.00
34789685--34790355	44	15.3	43	65	8	179	26	25	25	22	2.00
34790693--34790907	44	4.9	44	89	1	306	28	18	23	29	1.98
34790654--34790907	87	2.9	88	83	8	236	28	18	24	28	1.98
34790693--34790907	87	2.5	88	89	3	317	28	18	23	29	1.98
34790693--34790934	131	1.8	130	82	6	310	28	19	23	28	1.98
34791577--34791620	18	2.3	19	80	15	54	70	4	2	22	1.17
34791675--34791714	16	2.5	16	84	11	55	45	37	2	15	1.59
34792046--34792078	16	2.1	16	88	5	50	84	9	3	3	0.82
34792758--34792833	12	6.2	12	74	6	62	22	6	1	69	1.19
34792761--34792835	3	25.3	3	72	5	55	24	6	1	68	1.22
34796766--34796840	33	2.2	34	90	2	116	42	12	6	38	1.68
34797684--34797734	10	5.1	10	75	17	52	27	15	31	25	1.96
34797686--34797734	20	2.5	20	89	0	80	26	16	32	24	1.96
34802740--34802792	23	2.4	22	76	20	56	9	18	1	69	1.25
34804630--34804852	39	5.7	40	82	6	224	25	28	20	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34804630--34804853	79	2.8	79	78	7	231	25	28	20	25	1.99
34804785--34804861	40	1.9	41	84	7	104	27	28	19	24	1.99
34810760--34810817	20	2.9	19	82	7	62	24	29	13	32	1.94
34818508--34818545	19	2.0	20	94	5	69	18	34	10	36	1.85
34821160--34821203	12	3.5	13	93	6	74	77	6	4	11	1.11
34823284--34823338	15	3.8	14	80	7	65	74	1	21	1	1.01
34834193--34834261	33	2.1	34	83	2	86	30	20	14	34	1.92
34836384--34836432	22	2.2	23	82	10	66	42	18	8	30	1.79
34838589--34838632	22	2.0	22	95	0	79	34	4	36	25	1.76
34842904--34842943	18	2.2	18	90	0	62	7	12	2	77	1.07
34842912--34842966	18	2.9	18	82	17	67	5	18	1	74	1.10
34842905--34842951	18	2.7	17	78	18	60	8	12	4	74	1.19
34845196--34845234	12	3.0	12	88	11	51	15	12	2	69	1.30
34845534--34845577	22	2.0	22	95	0	79	34	4	36	25	1.76
34853265--34853300	18	2.0	18	89	10	56	13	25	0	61	1.33
34866762--34866804	11	3.9	11	100	0	86	74	6	0	18	1.04
34867732--34867791	18	3.2	18	78	7	66	73	3	16	6	1.18
34881497--34881532	19	1.9	19	88	5	56	41	33	8	16	1.78
34884762--34884807	12	3.7	12	85	5	56	63	0	23	13	1.30
34884793--34884834	22	1.9	22	85	9	59	64	2	21	11	1.38
34889871--34889926	17	3.2	17	76	18	69	35	10	17	35	1.85
34889914--34889946	10	3.3	10	100	0	66	48	18	12	21	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34890242--34890425	40	4.6	41	82	8	229	24	22	27	25	2.00
34890242--34890425	79	2.3	80	84	6	232	24	22	27	25	2.00
34890243--34890458	79	2.7	78	79	12	226	25	22	27	24	2.00
34894724--34894761	17	2.2	18	85	4	51	10	23	2	63	1.39
34900964--34901011	21	2.3	21	82	7	53	33	4	16	45	1.67
34902924--34902970	20	2.3	20	85	0	67	21	12	36	29	1.91
34904640--34904745	48	2.2	48	85	9	137	14	24	1	59	1.45
34905832--34905857	11	2.4	11	100	0	52	19	0	7	73	1.07
34907348--34907394	20	2.3	20	85	0	67	21	12	36	29	1.91
34912078--34912143	21	3.0	22	86	4	80	30	4	30	34	1.78
34915135--34915187	23	2.4	22	76	20	56	9	18	1	69	1.25
34925572--34925610	20	1.9	21	89	5	62	35	12	28	23	1.91
34931102--34931321	79	2.8	79	80	6	205	26	27	20	24	1.99
34931139--34931321	40	4.6	40	80	8	187	27	27	20	24	1.99
34938030--34938158	37	3.3	39	78	13	149	27	27	21	23	1.99
35510473--35510525	25	2.1	26	85	3	72	9	28	3	58	1.47
35517712--35517750	19	2.1	19	85	4	53	5	23	2	69	1.21
35521984--35522023	13	3.2	13	89	3	64	72	5	7	15	1.24
35521984--35522025	12	3.4	12	83	3	57	69	4	7	19	1.31
35522997--35523038	18	2.3	18	87	0	57	73	2	16	7	1.15
35526369--35526403	12	2.8	12	95	4	61	77	5	5	11	1.12
35527337--35527395	18	3.2	18	80	4	64	72	1	18	6	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35532237--35532299	21	2.9	22	85	4	74	28	4	31	34	1.78
35533850--35533875	13	2.0	13	100	0	52	46	7	0	46	1.31
35534265--35534303	20	1.9	21	89	5	62	35	10	28	25	1.89
35536702--35536739	19	2.0	19	100	0	76	21	21	21	36	1.95
35538078--35538116	21	1.9	21	89	5	62	15	2	2	79	0.95
35539643--35539681	20	1.9	21	89	5	62	35	12	28	23	1.91
35540650--35540682	12	2.8	12	90	4	50	15	9	3	72	1.21
35546043--35546067	12	2.1	12	100	0	50	44	16	8	32	1.76
35546315--35546352	19	1.9	19	89	5	58	18	31	10	39	1.85
35548341--35548379	10	3.9	10	82	0	51	25	23	20	30	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211