genome.fa.s14.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  138  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40928887--40928945	30	2.0	30	86	3	84	66	0	3	30	1.08
40928851--40928971	29	3.3	39	71	26	120	65	0	3	30	1.14
40938482--40938543	21	2.9	21	85	4	88	30	27	17	24	1.97
40938482--40938537	22	2.6	22	88	2	78	30	26	19	23	1.98
40941391--40941421	16	1.9	16	93	0	53	9	22	22	45	1.81
40950157--40950196	21	1.9	21	85	10	55	55	0	7	37	1.29
40977343--40977495	73	2.1	73	100	0	306	31	16	14	37	1.89
40980682--40980863	101	1.8	101	82	0	238	28	18	24	29	1.98
40980682--40980869	50	3.7	50	76	1	187	27	18	25	29	1.98
40988919--40989183	40	6.5	40	93	2	449	28	20	27	23	1.99
40988919--40989183	81	3.3	81	98	0	512	28	20	27	23	1.99
40996921--40997181	41	6.5	41	91	3	440	28	20	27	23	1.99
40996921--40997181	81	3.2	81	92	2	454	28	20	27	23	1.99
41004799--41005710	40	22.5	41	75	13	579	30	16	25	27	1.97
41004799--41005715	81	11.3	81	74	12	650	30	16	25	27	1.97
41004714--41005859	568	2.0	568	97	0	2157	30	15	24	29	1.95
41007036--41007089	27	2.0	27	100	0	108	18	14	29	37	1.91
41007398--41007424	12	2.2	12	100	0	54	33	22	14	29	1.94
41011439--41011486	20	2.4	20	89	0	69	37	10	2	50	1.49
41011452--41011489	20	1.9	20	100	0	76	36	15	2	44	1.61
41016690--41016802	27	4.2	26	87	4	163	18	17	19	44	1.87
41016690--41016802	53	2.1	54	90	4	176	18	17	19	44	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41022472--41022497	9	2.9	9	100	0	52	53	23	0	23	1.46
41025735--41025782	2	24.0	2	86	0	69	43	0	56	0	0.99
41025740--41025791	24	2.2	24	92	0	86	42	0	57	0	0.98
41025736--41025790	28	2.0	28	96	0	101	41	0	58	0	0.98
41036842--41036888	24	2.0	24	86	0	67	29	23	21	25	1.99
41042304--41042568	103	2.6	104	90	3	417	29	29	20	19	1.97
41042896--41042960	30	2.2	29	81	8	76	30	27	6	35	1.81
41042903--41042960	30	1.9	30	85	0	80	31	24	6	37	1.82
41049796--41050060	103	2.6	104	90	3	417	29	29	20	19	1.97
41050388--41050452	30	2.2	29	81	8	76	30	27	6	35	1.81
41050395--41050452	30	1.9	30	85	0	80	31	24	6	37	1.82
41057284--41057548	103	2.6	104	90	3	417	29	29	20	19	1.97
41057876--41057940	30	2.2	29	81	8	76	30	27	6	35	1.81
41057883--41057940	30	1.9	30	85	0	80	31	24	6	37	1.82
41073881--41073943	25	2.6	26	76	20	73	39	1	3	55	1.25
41077617--41077806	68	2.8	68	77	6	179	35	17	6	39	1.77
41089918--41090102	101	1.8	101	84	3	255	30	23	19	27	1.98
41089965--41090108	50	2.9	50	77	3	155	29	24	20	26	1.99
41093407--41093537	46	2.8	46	95	2	237	29	26	9	34	1.87
41094284--41094328	17	2.6	17	89	0	63	60	15	0	24	1.36
41105722--41105765	18	2.4	18	88	3	61	34	18	20	27	1.96
41112499--41112530	15	2.1	15	94	0	55	68	9	6	15	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41114613--41114691	40	2.0	40	82	9	99	26	11	24	37	1.89
41114641--41114797	41	3.9	41	84	4	192	28	12	22	36	1.91
41121102--41121139	20	1.9	20	88	0	58	39	28	18	13	1.88
41125199--41125504	42	7.4	42	82	3	318	29	19	18	32	1.96
41125291--41125525	126	1.9	126	88	0	353	29	16	20	34	1.94
41125268--41125528	84	3.1	84	87	0	371	29	16	20	34	1.94
41133002--41133183	40	4.7	40	82	8	223	24	22	27	25	2.00
41133003--41133183	39	4.6	39	81	11	201	24	22	27	24	2.00
41133055--41133216	78	2.1	78	83	6	204	26	20	27	25	1.99
41173415--41173461	23	2.1	23	84	7	62	51	12	4	31	1.59
41178793--41178834	18	2.5	17	88	7	59	19	7	4	69	1.31
41178877--41178920	11	4.0	11	100	0	88	18	0	9	72	1.10
41181785--41181979	50	3.9	50	78	0	185	22	27	21	28	1.99
41190503--41190626	65	1.9	65	96	0	230	24	8	18	48	1.76
41192222--41192246	3	8.3	3	100	0	50	68	0	0	32	0.90
41194308--41194413	43	2.5	41	80	8	106	36	25	13	24	1.92
41194349--41194480	67	2.0	68	83	4	169	28	28	18	25	1.98
41198109--41198205	50	1.9	50	97	0	185	49	12	1	37	1.47
41210159--41210782	71	8.8	71	77	3	495	34	23	16	25	1.95
41210254--41210782	283	1.9	284	82	3	681	34	23	16	24	1.95
41212518--41212941	211	2.0	211	96	0	785	32	23	16	27	1.96
41215139--41215164	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41215257--41215294	18	2.2	18	90	4	60	36	2	0	60	1.11
41215283--41215323	19	2.0	21	90	9	68	34	2	9	53	1.47
41215905--41215936	11	2.8	12	86	13	50	12	0	0	87	0.54
41220723--41220761	12	3.3	12	85	3	53	69	10	5	15	1.34
41223110--41223663	142	3.9	142	92	1	914	32	18	21	27	1.97
41223392--41223608	44	4.7	44	71	12	157	32	18	22	26	1.97
41223534--41223618	44	2.0	44	83	2	109	32	18	18	29	1.95
41224774--41224798	11	2.3	11	100	0	50	8	36	40	16	1.77
41227369--41227404	18	2.0	18	88	0	54	63	11	11	13	1.51
41227812--41227863	26	2.0	26	100	0	104	23	0	3	73	1.00
41231839--41231875	16	2.3	17	81	13	51	59	0	2	37	1.12
41231866--41231925	25	2.4	24	76	17	61	50	5	1	43	1.34
41232822--41232860	14	2.7	15	84	11	55	43	7	0	48	1.31
41233328--41233368	17	2.4	17	84	11	57	17	2	4	75	1.08
41235024--41235048	12	2.1	12	100	0	50	76	16	0	8	1.02
41235732--41235766	18	1.9	18	88	0	52	42	28	2	25	1.69
41238098--41238138	21	2.0	21	100	0	82	26	4	24	43	1.74
41243609--41243645	8	4.5	8	89	3	56	27	59	0	13	1.35
41245743--41245791	25	2.0	25	83	0	62	59	6	0	34	1.22
41245745--41245822	32	2.4	34	80	6	90	57	5	2	34	1.34
41247804--41247903	50	2.0	50	98	0	191	51	12	20	17	1.76
41250349--41250490	69	2.1	69	94	0	248	33	18	16	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41257560--41257620	24	2.5	24	81	5	70	37	32	11	18	1.86
41260638--41260680	18	2.4	18	92	0	68	30	23	9	37	1.86
41263880--41264104	40	5.7	40	86	5	278	26	27	22	24	2.00
41263881--41264104	119	1.9	120	84	6	303	26	26	22	24	2.00
41270788--41270927	32	4.3	31	74	11	111	23	45	2	29	1.65
41271436--41271762	117	2.8	117	88	2	487	45	24	7	21	1.78
41271962--41272005	16	2.6	17	82	13	56	36	0	18	45	1.49
41276365--41276545	41	4.4	41	82	8	199	28	18	24	28	1.98
41276365--41276545	82	2.2	82	84	8	226	28	18	24	28	1.98
41276527--41276641	43	2.7	43	77	11	121	23	17	25	33	1.96
41282082--41282108	11	2.5	11	100	0	54	70	14	0	14	1.17
41284298--41284332	16	2.2	16	100	0	70	22	11	11	54	1.68
41290490--41290523	16	2.1	16	88	0	50	38	0	5	55	1.24
41291554--41291596	3	14.7	3	95	4	79	69	0	0	30	0.88
41291552--41291593	20	2.1	20	100	0	84	71	0	0	28	0.86
41291550--41291597	23	2.1	22	96	3	87	72	0	0	27	0.84
41300478--41300577	38	2.6	38	77	6	103	24	30	18	28	1.97
41300638--41300718	22	3.8	22	69	21	55	30	0	19	49	1.49
41300635--41300751	41	2.9	40	79	13	132	29	0	19	50	1.54
41300660--41300751	19	4.6	20	74	15	73	28	1	21	48	1.57
41300813--41300886	29	2.6	29	85	8	105	43	6	20	29	1.77
41303228--41303276	14	3.4	15	78	13	50	48	2	2	46	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41304197--41304306	37	2.8	40	79	9	118	24	16	25	33	1.96
41304198--41304336	40	3.5	39	71	12	97	26	15	25	32	1.95
41310706--41310776	4	17.0	4	76	21	58	70	1	23	4	1.13
41311630--41311766	40	3.5	40	74	9	129	28	18	21	31	1.97
41314000--41314037	12	2.9	14	85	14	55	71	0	0	28	0.87
41318812--41318869	25	2.3	25	83	13	75	56	1	1	39	1.19
41327689--41327718	15	1.9	16	93	6	53	56	0	0	43	0.99
41328156--41328205	18	2.8	17	82	14	64	30	0	2	68	1.01
41328188--41328240	24	2.2	24	86	3	72	33	1	0	64	1.05
41329368--41329392	6	4.2	6	100	0	50	68	0	0	32	0.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211