genome.fa.s14.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  152  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45079710--45080896	88	13.5	88	93	0	1950	27	22	24	25	2.00
45102473--45102569	40	2.5	39	86	1	131	18	30	19	30	1.96
45102473--45102586	39	2.9	40	85	1	140	19	28	18	33	1.95
45113375--45113408	16	2.1	16	94	0	59	20	11	32	35	1.89
45116608--45116758	50	2.9	49	79	9	140	26	21	29	21	1.99
45116675--45116847	50	3.5	49	79	7	154	28	22	26	21	1.99
45117169--45117199	15	2.1	15	100	0	62	29	19	6	45	1.75
45122013--45122044	16	2.0	16	93	0	55	40	6	9	43	1.62
45122270--45122454	101	1.8	102	91	3	311	23	18	27	30	1.98
45122267--45122461	51	3.9	49	81	4	221	23	18	27	29	1.98
45122376--45122456	26	3.2	26	65	28	73	22	14	29	33	1.94
45122270--45122461	102	1.9	100	88	5	287	23	19	27	29	1.98
45127447--45127678	50	4.5	50	81	6	236	27	21	27	23	1.99
45148800--45148929	49	2.6	48	83	9	149	43	4	2	50	1.35
45148884--45149058	94	1.9	94	93	0	305	36	10	5	48	1.61
45162203--45162272	33	2.1	33	97	0	131	28	17	14	40	1.88
45164883--45164926	22	2.0	23	86	13	65	54	4	2	38	1.33
45171758--45171802	19	2.4	19	76	0	54	62	0	0	37	0.96
45171736--45171820	29	2.9	29	75	3	80	63	0	2	34	1.07
45171828--45171880	28	1.9	27	88	11	81	60	1	3	33	1.26
45172114--45172155	19	2.2	20	91	8	70	23	4	0	71	1.05
45175284--45175519	43	5.5	43	78	7	246	30	28	20	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45175284--45175517	86	2.7	85	80	7	276	29	29	20	20	1.98
45179038--45179093	12	4.8	12	74	14	55	16	3	1	78	0.97
45179038--45179093	17	3.3	16	80	16	60	16	3	1	78	0.97
45179458--45179514	17	3.6	16	79	6	55	35	43	1	19	1.61
45179772--45180236	113	4.1	114	83	3	580	26	26	21	26	1.99
45180131--45180303	71	2.4	72	86	4	224	25	26	23	24	2.00
45180015--45180424	186	2.2	188	88	4	589	25	26	22	25	2.00
45179909--45180604	300	2.3	300	86	3	945	26	25	20	27	1.99
45180206--45180535	114	2.9	114	91	0	516	26	27	20	25	1.99
45180435--45180681	73	3.4	73	91	0	377	28	23	19	29	1.98
45180647--45180725	41	1.9	41	84	5	106	31	26	16	25	1.96
45180144--45180886	374	2.0	372	85	1	1013	27	24	21	27	1.99
45180590--45180903	114	2.8	113	85	2	414	29	22	20	27	1.98
45189065--45189106	20	2.1	20	86	0	57	47	0	7	45	1.30
45190049--45190122	32	2.3	32	86	6	98	28	37	17	16	1.91
45191500--45191532	18	1.9	17	88	11	50	36	6	15	42	1.71
45201450--45201956	255	2.0	255	96	0	944	27	19	22	30	1.98
45208867--45208965	28	3.6	27	84	11	112	28	28	12	31	1.92
45212910--45213031	45	2.7	45	79	5	131	41	15	19	22	1.89
45213316--45213380	27	2.4	27	73	19	64	30	16	27	24	1.97
45218652--45218676	13	1.9	13	100	0	50	36	16	0	48	1.46
45219010--45219082	30	2.4	30	78	13	78	28	23	5	42	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45221500--45221542	20	2.0	22	86	8	63	58	2	0	39	1.11
45223336--45223485	50	3.0	49	74	5	131	24	20	22	33	1.97
45223530--45223848	175	1.8	173	87	2	478	32	20	15	31	1.94
45223788--45223877	45	2.0	44	84	2	117	28	24	16	30	1.97
45237970--45238017	25	1.9	25	91	0	78	47	8	0	43	1.33
45238049--45238080	14	2.3	15	89	10	50	18	37	0	43	1.51
45240099--45240126	2	14.0	2	100	0	56	50	0	0	50	1.00
45248004--45248037	17	2.0	17	88	0	50	35	0	0	64	0.94
45249437--45249465	13	2.1	14	93	6	51	41	0	0	58	0.98
45251201--45251242	17	2.3	19	88	12	70	28	11	21	38	1.89
45252267--45252440	91	1.9	92	91	1	287	31	14	21	32	1.94
45253790--45253913	55	2.2	55	83	8	144	42	0	3	54	1.16
45253772--45253927	60	2.7	56	81	11	172	42	1	2	53	1.25
45258234--45258469	119	2.0	114	87	5	339	20	19	18	41	1.91
45260291--45260316	12	2.2	12	100	0	52	7	38	23	30	1.83
45263167--45263301	18	8.0	17	67	19	77	39	1	2	56	1.24
45263289--45263360	26	3.0	25	71	18	57	45	1	1	51	1.18
45263455--45263546	44	2.0	46	91	4	152	35	27	4	32	1.77
45264214--45264255	22	1.9	22	90	0	66	21	0	11	66	1.23
45264281--45264560	115	2.4	114	81	5	305	22	2	14	59	1.48
45264658--45264712	22	2.5	22	79	8	58	30	0	5	63	1.17
45267232--45267264	15	2.1	17	88	11	52	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45269030--45269076	25	1.9	25	95	4	87	59	0	2	38	1.09
45269442--45269476	17	2.1	17	89	5	54	42	0	0	57	0.99
45276277--45276309	7	4.7	7	88	11	50	72	0	15	12	1.12
45276282--45276308	13	2.1	13	100	0	54	70	0	14	14	1.17
45276276--45276316	13	2.9	15	79	20	52	75	0	12	12	1.05
45277519--45277882	131	2.8	131	92	0	602	29	21	24	24	1.99
45277917--45278436	44	11.1	44	70	18	320	32	17	21	28	1.96
45277915--45278487	142	4.0	142	95	0	1002	33	17	21	27	1.96
45278103--45278284	98	1.9	97	82	6	233	31	18	20	29	1.96
45278245--45278426	98	1.9	97	83	6	242	32	18	20	28	1.96
45278343--45278479	44	3.1	44	82	6	127	32	18	21	27	1.97
45282715--45282766	18	2.9	19	88	11	83	44	11	13	30	1.79
45282724--45282815	19	4.8	18	72	27	66	39	7	17	35	1.78
45282731--45282825	41	2.3	41	87	3	129	37	6	15	40	1.73
45282951--45282987	18	2.1	18	94	0	65	40	10	13	35	1.80
45283620--45283686	4	17.8	4	73	17	63	0	25	0	74	0.82
45283611--45283686	11	7.2	11	74	12	61	0	23	0	76	0.79
45283614--45283683	23	3.1	22	82	15	90	0	24	0	75	0.80
45283646--45283687	22	1.9	22	95	0	75	0	26	0	73	0.83
45283613--45283688	7	10.1	7	75	12	62	0	25	0	75	0.81
45283784--45283851	25	2.7	24	80	13	75	2	13	4	79	1.00
45284160--45284329	30	5.7	30	82	10	206	39	2	23	34	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45284161--45284329	59	2.8	59	87	5	243	39	2	23	34	1.68
45284508--45286335	78	23.8	77	86	5	2156	34	20	16	28	1.94
45284508--45286310	232	7.9	229	85	6	2012	34	20	16	28	1.94
45284508--45286335	155	11.9	153	85	6	2118	34	20	16	28	1.94
45287189--45287258	9	7.6	9	73	10	61	7	10	2	80	1.01
45287189--45287258	19	3.7	19	75	12	72	7	10	2	80	1.01
45287191--45287258	28	2.4	29	90	4	104	7	10	2	79	1.03
45292102--45292266	67	2.5	67	94	0	294	32	20	25	21	1.98
45293012--45293126	52	2.2	52	89	4	169	45	9	12	33	1.74
45293017--45293167	18	8.2	19	74	24	128	42	10	11	35	1.76
45293102--45293169	21	3.3	21	70	15	70	35	10	13	41	1.78
45293050--45293169	40	3.2	40	84	11	139	40	10	11	37	1.77
45293297--45293339	18	2.3	18	88	4	59	41	9	9	39	1.69
45293975--45294064	4	22.5	4	70	18	55	1	26	0	72	0.92
45293987--45294066	23	3.4	23	80	13	83	1	26	0	72	0.92
45294002--45294060	27	2.2	26	85	8	75	1	23	0	74	0.91
45294166--45294220	20	2.7	20	78	10	58	0	20	7	72	1.07
45294166--45294222	21	2.8	21	76	12	55	0	21	7	71	1.08
45294549--45294637	30	3.0	30	77	0	97	41	5	21	31	1.76
45297062--45297164	40	2.6	40	83	6	120	30	21	21	27	1.98
45297102--45297284	99	1.9	98	83	5	244	30	21	21	26	1.98
45297303--45297490	102	1.8	103	86	3	272	28	20	22	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45297780--45297979	14	13.5	14	71	16	91	23	1	29	45	1.62
45297864--45297979	14	8.1	14	79	11	92	21	0	32	44	1.58
45297864--45297917	7	7.7	7	80	0	63	20	0	35	44	1.52
45297814--45297979	86	1.9	86	88	0	251	23	1	29	45	1.63
45297934--45297979	7	6.4	7	80	5	56	17	0	34	47	1.48
45297848--45297978	29	4.6	29	73	9	106	22	0	32	44	1.59
45298563--45299024	115	4.0	115	80	3	414	27	14	22	36	1.93
45299461--45299499	20	2.0	20	84	0	51	10	12	28	48	1.74
45300958--45301028	35	2.0	36	83	5	90	39	4	5	50	1.45
45301171--45301408	9	25.6	9	73	14	171	43	18	0	37	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211