genome.fa.s14.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  125  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36276146--36276175	15	2.0	15	93	0	51	33	10	6	50	1.62
36277598--36277698	42	2.4	42	83	4	125	38	16	11	32	1.86
36277920--36277954	17	2.1	17	88	0	52	42	8	0	48	1.33
36280083--36280176	46	2.0	46	100	0	188	23	19	22	35	1.96
36280512--36280653	62	2.3	61	90	8	214	47	8	14	29	1.73
36283212--36283255	23	1.9	23	95	0	79	38	27	15	18	1.91
36283485--36283531	23	2.0	23	91	0	76	51	19	8	21	1.73
36283829--36283922	46	2.0	46	91	0	152	23	17	22	37	1.94
36286147--36286176	15	2.0	15	93	0	51	33	10	6	50	1.62
36287599--36287699	42	2.4	42	83	4	125	38	16	11	32	1.86
36287921--36287955	17	2.1	17	88	0	52	42	8	0	48	1.33
36290086--36290179	46	2.0	46	100	0	188	23	19	22	35	1.96
36290515--36290656	62	2.3	61	90	8	214	47	8	14	29	1.73
36291564--36291626	20	3.2	20	75	22	62	71	1	17	9	1.20
36293212--36293255	23	1.9	23	95	0	79	38	27	15	18	1.91
36293485--36293531	23	2.0	23	95	0	85	48	19	8	23	1.75
36293829--36293922	46	2.0	46	91	0	152	23	17	22	37	1.94
36296166--36296215	10	4.7	10	88	9	64	74	6	2	18	1.12
36296166--36296215	11	4.5	11	90	7	75	74	6	2	18	1.12
36297155--36297199	6	7.0	6	85	14	63	80	0	20	0	0.72
36297161--36297189	15	1.9	15	100	0	58	75	0	24	0	0.80
36297155--36297195	21	2.0	21	100	0	82	78	0	21	0	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36297156--36297203	15	3.4	15	72	16	57	81	0	18	0	0.70
36297156--36297203	21	2.3	21	92	0	78	81	0	18	0	0.70
36297280--36297353	35	2.2	34	79	13	82	62	1	27	9	1.34
36302555--36302850	39	7.4	39	80	8	306	32	18	13	35	1.89
36302602--36302773	87	2.0	86	88	1	254	32	18	13	35	1.90
36302582--36302812	126	1.8	126	91	0	381	32	18	13	35	1.89
36304864--36304904	14	2.9	15	79	17	52	48	9	0	41	1.36
36304900--36305033	66	2.0	66	98	0	259	34	17	5	42	1.73
36316331--36316388	31	1.9	30	85	3	80	46	15	13	24	1.82
36316426--36316507	17	4.8	17	76	0	56	42	21	10	24	1.85
36316570--36316612	23	1.9	23	90	4	70	32	25	13	27	1.94
36317141--36317179	18	2.2	18	90	0	60	41	15	10	33	1.81
36317150--36317231	36	2.3	36	82	0	92	46	19	4	29	1.71
36317227--36317264	17	2.2	18	85	4	51	50	15	7	26	1.72
36319578--36319628	26	2.0	26	96	0	93	11	23	35	29	1.90
36319499--36319764	104	2.6	104	94	0	462	18	20	30	30	1.96
36319683--36319732	25	2.0	25	96	0	91	14	24	32	30	1.94
36326606--36326656	26	2.0	26	96	0	93	11	23	35	29	1.90
36326527--36326792	102	2.6	104	92	3	446	18	20	30	30	1.96
36332009--36332050	21	2.0	21	85	0	57	33	7	0	59	1.25
36332670--36332707	17	2.3	17	86	4	51	15	23	5	55	1.61
36338646--36338689	23	1.9	22	82	17	54	36	25	0	38	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36338734--36338822	45	2.0	45	93	0	151	33	23	17	24	1.96
36338833--36339019	51	3.7	50	76	4	205	31	27	17	24	1.97
36338831--36339015	101	1.8	101	90	3	300	31	27	17	24	1.97
36341549--36341790	50	4.8	50	82	7	256	25	29	19	25	1.99
36348240--36348424	79	2.3	81	82	9	220	25	22	27	24	2.00
36348241--36348424	40	4.6	40	80	9	198	25	22	27	24	2.00
36348293--36348457	79	2.1	79	83	6	201	27	21	26	24	1.99
36361546--36361587	14	3.1	14	79	6	50	42	26	2	28	1.67
36363252--36363276	13	1.9	13	100	0	50	12	0	56	32	1.36
36364631--36364699	29	2.4	29	87	4	95	18	21	28	30	1.97
36369237--36369309	22	3.1	22	70	21	67	35	24	17	21	1.95
36369237--36369327	48	1.9	47	88	6	139	38	25	15	20	1.92
36374393--36374438	22	2.1	21	84	11	58	43	0	0	56	0.99
36392256--36392299	20	2.2	21	80	12	56	25	20	18	36	1.95
36392265--36392310	20	2.3	20	96	0	83	19	21	19	39	1.93
36396900--36397126	79	2.9	80	85	5	295	28	20	25	25	1.99
36396911--36397152	119	2.1	116	82	6	283	28	20	25	26	1.99
36396859--36397119	40	6.7	40	80	8	279	26	21	25	26	1.99
36396905--36397152	79	3.2	77	83	8	272	28	20	25	26	1.99
36404928--36405054	40	3.2	40	95	2	220	23	20	27	28	1.99
36404928--36405087	80	2.0	79	85	6	216	25	20	26	27	1.99
36407936--36407990	20	2.8	20	81	10	67	25	20	16	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36412520--36412618	50	2.0	50	85	0	135	28	23	28	20	1.99
36420534--36420610	26	3.0	25	80	12	84	33	19	9	37	1.83
36423876--36423994	45	2.7	45	80	6	136	33	22	12	31	1.91
36429132--36429333	45	4.5	45	86	0	233	35	24	13	27	1.92
36444816--36444878	33	1.9	32	84	9	83	25	1	9	63	1.34
36444816--36444878	32	1.9	33	84	9	85	25	1	9	63	1.34
36451682--36451730	5	9.8	5	86	0	62	22	53	0	24	1.47
36455171--36455221	26	2.0	24	85	14	68	52	1	0	45	1.12
36458437--36458465	13	2.2	13	100	0	58	37	17	13	31	1.89
36460482--36460596	54	2.1	54	98	0	221	39	19	6	34	1.78
36460634--36460674	20	2.0	21	85	9	57	29	21	4	43	1.73
36460743--36460931	51	3.8	49	82	4	189	31	26	14	26	1.95
36467474--36467576	27	3.8	27	82	0	125	23	14	21	40	1.90
36477184--36477256	22	3.3	22	76	14	78	26	13	23	36	1.92
36477603--36477661	31	2.0	29	83	12	75	22	8	16	52	1.70
36478596--36478857	135	1.9	134	95	0	470	31	20	14	34	1.92
36482394--36482419	7	3.7	7	100	0	52	15	11	0	73	1.11
36487450--36487506	30	1.9	30	96	0	105	38	17	14	29	1.89
36500057--36500242	40	4.7	40	88	5	252	24	22	27	26	2.00
36500057--36500275	80	2.7	79	82	7	221	25	21	26	26	1.99
36505650--36505698	18	2.6	19	78	18	57	22	2	2	73	1.04
36505649--36505698	22	2.3	22	83	10	66	22	2	2	74	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36512357--36512619	40	6.6	40	87	3	316	24	20	28	26	1.99
36512396--36512654	80	3.3	80	84	3	238	25	20	28	25	1.99
36525810--36525987	27	6.6	27	79	3	115	28	28	16	26	1.97
36525810--36525987	54	3.3	55	80	10	204	28	28	16	26	1.97
36525831--36525986	82	1.9	81	85	3	215	28	28	16	26	1.97
36530538--36530721	40	4.6	40	81	6	187	23	20	27	28	1.99
36530538--36530718	80	2.3	81	83	9	212	23	20	27	28	1.99
36533629--36533679	21	2.4	21	90	0	75	33	3	15	47	1.64
36536358--36536392	18	2.0	18	88	5	54	42	0	14	42	1.45
36538460--36538529	24	3.0	23	81	8	70	37	4	5	52	1.45
36544093--36544127	7	5.0	7	86	13	54	68	0	17	14	1.21
36545604--36545692	44	2.0	44	86	0	124	31	20	22	25	1.98
36545476--36546030	142	3.9	142	92	0	905	32	18	20	27	1.96
36545902--36546024	44	2.8	44	77	4	115	33	17	19	29	1.95
36546109--36546372	50	5.3	50	75	1	269	33	23	18	24	1.97
36546079--36546388	100	3.1	100	94	0	521	31	23	19	25	1.98
36548065--36548119	24	2.3	24	84	6	67	38	5	7	49	1.54
36557472--36557508	11	3.2	12	85	14	51	13	5	8	72	1.24
36557587--36557619	12	2.6	13	95	4	59	6	3	6	84	0.84
36561922--36561960	20	2.0	20	85	10	53	38	10	10	41	1.73
36567474--36567533	27	2.2	27	100	0	120	30	0	13	56	1.37
36575655--36575969	53	6.0	52	84	4	348	31	14	23	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36575655--36575972	79	4.0	81	86	4	400	31	14	23	31	1.94
36575654--36575964	132	2.4	132	88	2	455	31	14	23	30	1.94
36575655--36575972	27	12.0	27	81	8	352	31	14	23	31	1.94
36576134--36576204	27	2.6	27	78	8	81	45	11	22	21	1.83
36580827--36580885	30	2.0	30	86	6	84	35	6	23	33	1.82
36581112--36581258	50	2.9	52	83	5	201	26	15	27	30	1.96
36581170--36581251	26	3.2	26	64	27	66	25	12	26	35	1.91
36581258--36581344	45	1.9	45	83	0	111	26	14	20	37	1.92
36583931--36584020	3	30.3	3	73	6	76	63	3	5	27	1.33
36583914--36584014	15	6.9	14	75	5	69	62	3	4	28	1.34

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211