genome.fa.s14.2.7.7.80.10.50.1000.165.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  165  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48759600--48759759	60	2.6	61	83	2	205	40	19	20	20	1.92
48760809--48760881	30	2.5	29	86	2	92	32	5	15	46	1.68
48761140--48761184	6	7.5	6	97	0	72	26	0	35	37	1.57
48764321--48764346	2	13.0	2	100	0	52	50	0	50	0	1.00
48768649--48768738	46	2.0	46	90	0	144	31	7	13	47	1.71
48768652--48768748	46	2.1	46	86	0	131	30	8	14	46	1.74
48768655--48768761	46	2.4	44	75	13	110	31	7	14	45	1.73
48770841--48770922	21	3.9	21	78	1	65	18	19	15	46	1.84
48774069--48774175	21	5.1	21	76	4	81	46	16	22	14	1.83
48774066--48774249	42	4.4	42	77	2	163	48	14	20	16	1.80
48780981--48781152	21	8.2	21	71	2	121	45	17	19	18	1.86
48781002--48781150	42	3.6	41	83	7	174	45	16	18	18	1.86
48788067--48788274	21	9.9	21	78	6	199	13	20	17	48	1.81
48788069--48788272	63	3.2	63	82	7	254	14	19	18	48	1.82
48792338--48792440	46	2.2	46	87	0	152	33	9	12	44	1.75
48793062--48793090	7	4.1	7	100	0	58	41	13	0	44	1.44
48793423--48793468	3	15.3	3	90	0	74	67	0	32	0	0.91
48793826--48793895	36	1.9	36	94	0	122	18	8	24	48	1.76
48795433--48795492	24	2.5	24	81	5	68	38	11	3	46	1.57
48803427--48803956	44	12.0	44	87	3	712	28	16	25	29	1.97
48803478--48804916	88	16.4	87	71	9	643	28	17	25	27	1.98
48803654--48804907	44	28.6	44	69	11	181	28	18	25	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48803961--48804209	132	1.9	131	80	4	295	30	18	23	27	1.98
48803915--48805009	524	2.1	526	91	1	1793	29	18	25	27	1.98
48804002--48804930	44	21.2	44	71	9	310	29	18	24	27	1.98
48803915--48805009	176	6.2	176	92	1	1779	29	18	25	27	1.98
48804003--48805020	88	11.6	88	68	11	579	28	18	24	27	1.98
48806770--48806829	24	2.5	24	81	5	68	40	11	1	46	1.50
48808457--48808501	22	2.0	24	86	8	67	26	24	2	46	1.64
48809677--48809737	26	2.4	26	88	2	88	50	14	8	26	1.71
48809652--48809744	28	3.5	25	81	11	98	49	15	8	26	1.73
48811500--48811545	15	3.1	15	87	0	65	36	32	8	21	1.84
48811991--48812050	6	10.0	6	88	0	84	63	13	3	20	1.43
48811991--48812062	24	3.0	24	87	0	108	61	12	5	20	1.51
48811999--48812062	6	10.7	6	89	0	56	60	12	6	20	1.53
48821073--48821099	13	2.1	13	100	0	54	37	0	14	48	1.45
48823657--48823688	11	2.9	11	90	0	55	56	28	6	9	1.55
48830745--48831270	97	5.4	97	88	0	656	19	31	19	29	1.97
48830745--48831272	50	10.7	50	81	4	583	19	31	19	28	1.97
48830745--48831299	147	3.8	146	79	8	547	20	31	19	28	1.97
48834716--48834836	41	3.0	41	82	4	111	35	27	19	17	1.94
48834995--48835032	14	2.7	15	80	12	53	55	13	0	31	1.38
48838166--48838222	30	1.9	30	85	0	78	38	10	22	28	1.87
48838560--48838752	50	3.8	50	86	0	260	27	22	29	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48838564--48838752	100	1.9	101	88	1	290	26	23	29	20	1.99
48839273--48839334	31	2.0	31	96	0	115	29	6	27	37	1.82
48840383--48840519	40	3.5	38	77	9	125	32	24	16	26	1.96
48841458--48841513	5	10.8	5	92	7	94	58	0	0	41	0.98
48841458--48841515	22	2.7	22	94	5	102	58	0	0	41	0.98
48841505--48841563	24	2.5	24	100	0	118	50	3	3	42	1.35
48841471--48841563	24	3.7	26	90	9	117	54	2	2	40	1.24
48844869--48844923	29	2.0	29	89	7	87	27	16	16	40	1.89
48845126--48845184	22	2.6	22	94	2	100	30	27	0	42	1.56
48845134--48845233	52	1.9	52	89	0	155	30	31	0	39	1.57
48845186--48845238	22	2.4	22	84	6	72	33	32	0	33	1.58
48845284--48845334	19	2.8	18	76	5	57	35	0	1	62	1.06
48845270--48845325	29	2.0	28	89	10	87	37	0	1	60	1.07
48845273--48845334	29	2.1	29	82	11	74	37	0	3	59	1.13
48845425--48845458	15	2.3	15	90	5	52	26	0	5	67	1.13
48846417--48846441	7	3.6	7	100	0	50	28	0	12	60	1.32
48847295--48847350	24	2.3	24	96	0	103	28	37	16	17	1.91
48847630--48849826	29	74.6	29	82	8	2482	43	21	1	33	1.61
48847866--48847949	23	3.3	23	65	25	62	46	21	1	30	1.59
48847879--48847933	24	2.3	24	87	6	76	43	21	1	32	1.63
48853018--48853299	125	2.3	125	87	4	399	33	20	14	30	1.93
48853518--48853577	29	2.1	28	84	6	77	43	13	15	28	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48860626--48860873	124	2.1	118	84	9	322	39	13	10	36	1.79
48867624--48867692	34	2.0	34	94	0	120	40	2	17	39	1.64
48871662--48871702	17	2.4	17	87	4	55	68	2	0	29	1.03
48871662--48871702	9	4.7	9	84	6	57	68	2	0	29	1.03
48871662--48871716	18	3.1	18	81	5	58	67	1	1	29	1.11
48871730--48871785	20	2.9	19	78	5	60	62	0	1	35	1.06
48872141--48872173	16	2.0	16	94	5	57	36	0	0	63	0.95
48872248--48872296	20	2.4	21	80	16	59	30	0	2	67	1.02
48872252--48872301	10	5.2	10	75	15	52	30	0	2	68	1.01
48877885--48877912	3	9.3	3	100	0	56	64	0	0	35	0.94
48880758--48880811	29	2.0	26	85	10	72	25	0	1	72	0.95
48888647--48888757	43	2.6	43	89	1	150	32	22	17	27	1.96
48888932--48889046	31	3.7	31	87	1	160	45	18	7	28	1.77
48888932--48889057	62	2.0	62	89	3	191	46	18	7	27	1.75
48891813--48891882	33	2.2	33	87	5	99	31	22	7	38	1.81
48891823--48891890	33	2.1	33	100	0	136	27	23	5	42	1.77
48899273--48899471	52	3.8	52	78	4	209	29	7	14	48	1.70
48899336--48899459	55	2.3	52	86	4	158	30	5	12	50	1.63
48901284--48901432	43	3.5	43	79	8	160	28	24	16	30	1.96
48904620--48904881	46	5.6	46	86	7	352	29	20	15	33	1.94
48909726--48909913	23	8.2	22	71	11	101	31	4	22	41	1.73
48909704--48909897	46	4.2	46	78	4	167	31	4	23	41	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48909704--48909831	23	5.5	23	76	10	102	32	4	21	40	1.74
48910182--48910221	21	1.9	21	89	0	62	37	0	5	57	1.21
48910439--48910534	45	2.2	44	90	5	149	38	25	5	31	1.78
48910513--48910550	16	2.4	16	95	0	67	28	26	5	39	1.78
48914457--48914524	25	2.7	25	90	0	109	20	22	23	33	1.97
48915116--48915158	20	2.2	19	88	12	61	58	4	18	18	1.56
48916029--48916085	29	2.0	29	100	0	114	45	3	12	38	1.59
48916400--48916503	42	2.5	42	95	0	181	21	25	35	17	1.95
48928257--48928305	23	2.1	23	84	0	62	59	0	2	38	1.09
48937503--48937549	13	3.5	13	77	5	58	57	10	23	8	1.60
48937514--48937555	14	3.1	14	72	6	50	57	11	23	7	1.59
48937500--48937555	27	2.1	27	100	0	112	55	10	26	7	1.60
48940610--48940704	50	1.9	50	82	4	120	22	22	22	33	1.97
48941696--48941760	31	2.1	31	88	0	94	36	16	7	38	1.78
48953861--48953904	18	2.4	18	88	7	63	40	43	2	13	1.57
48953945--48953973	6	4.8	6	100	0	58	65	17	0	17	1.27
48954056--48954131	9	8.4	9	77	11	84	30	9	18	42	1.81
48954056--48954131	18	4.2	18	83	6	100	30	9	18	42	1.81
48954056--48954131	27	2.8	27	84	4	100	30	9	18	42	1.81
48954194--48954252	28	2.1	28	81	3	66	35	6	18	38	1.78
48956512--48956555	18	2.4	18	88	7	63	40	43	2	13	1.57
48956596--48956624	6	4.8	6	100	0	58	65	17	0	17	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48956707--48956782	9	8.4	9	77	11	84	30	9	18	42	1.81
48956707--48956782	18	4.2	18	83	6	100	30	9	18	42	1.81
48956707--48956782	27	2.8	27	84	4	100	30	9	18	42	1.81
48956845--48956903	28	2.1	28	81	3	66	35	6	18	38	1.78
48959163--48959206	18	2.4	18	88	7	63	40	43	2	13	1.57
48959247--48959275	6	4.8	6	100	0	58	65	17	0	17	1.27
48959358--48959433	9	8.4	9	77	11	84	30	9	18	42	1.81
48959358--48959433	18	4.2	18	83	6	100	30	9	18	42	1.81
48959358--48959433	27	2.8	27	84	4	100	30	9	18	42	1.81
48959496--48959554	28	2.1	28	81	3	66	35	6	18	38	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211