genome.fa.s14.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  41  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10828766--10828797	15	2.0	17	88	11	50	37	12	0	50	1.41
10828910--10828962	29	1.9	28	85	11	74	39	1	0	58	1.09
10828897--10828965	36	1.9	36	82	5	86	37	1	0	60	1.06
10828964--10829034	24	2.8	25	78	20	76	29	4	1	64	1.20
10830813--10830873	28	2.3	27	77	11	63	31	1	6	60	1.32
10831887--10831912	13	2.0	13	100	0	52	30	0	0	69	0.89
10833987--10834028	21	1.9	23	90	9	70	19	23	4	52	1.65
10835391--10835734	91	3.8	91	91	2	559	28	22	15	33	1.95
10835391--10835734	46	7.6	46	93	1	563	28	22	15	33	1.95
10835391--10835734	137	2.5	137	93	1	595	28	22	15	33	1.95
10840403--10840443	21	2.0	21	90	4	66	53	0	0	46	1.00
10850490--10850530	20	2.1	20	86	4	57	31	2	0	65	1.05
10850498--10850537	9	4.2	9	81	12	53	30	0	0	70	0.88
10857544--10857595	13	4.2	12	76	11	52	42	1	0	55	1.10
10857544--10857595	26	2.1	23	86	10	68	42	1	0	55	1.10
10857581--10857625	18	2.6	17	83	16	58	46	0	2	51	1.13
10861962--10862090	42	3.1	41	80	4	134	16	23	16	44	1.86
10862037--10862090	21	2.6	20	80	8	72	14	24	18	42	1.88
10866037--10866121	24	3.5	24	82	6	109	16	56	8	18	1.64
10872755--10872780	4	6.5	4	100	0	52	76	0	0	23	0.78
10874249--10874317	5	13.8	5	100	0	138	39	0	0	60	0.97
10885450--10885575	63	2.0	63	100	0	252	23	15	19	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10886186--10886431	44	5.6	44	83	3	275	32	17	20	29	1.96
10886186--10886432	132	1.9	132	88	3	372	31	17	21	29	1.96
10890399--10890437	13	2.9	13	96	3	69	33	12	15	38	1.85
10894734--10894836	42	2.5	42	85	0	125	47	19	15	17	1.83
10898824--10898849	3	8.7	3	100	0	52	30	0	0	69	0.89
10908750--10908775	13	2.0	13	100	0	52	7	30	46	15	1.74
10908994--10909045	11	4.5	11	74	11	50	30	5	1	61	1.30
10909658--10910054	200	2.0	200	97	0	749	28	12	25	32	1.92
10911117--10911156	8	5.0	8	88	11	64	40	0	0	60	0.97
10912519--10912650	24	5.5	24	88	5	171	15	20	21	41	1.90
10918027--10918091	32	2.0	33	90	3	105	50	10	1	36	1.47
10921079--10921146	9	7.3	9	75	8	57	29	4	1	64	1.21
10921698--10921747	3	16.7	3	100	0	100	34	0	0	66	0.92
10924307--10924361	12	4.5	12	77	22	53	5	10	0	83	0.79
10924288--10924354	28	2.5	27	90	4	100	7	11	1	79	1.00
10924288--10924368	28	3.0	27	84	10	87	7	12	2	77	1.06
10924921--10924999	41	1.9	41	86	0	113	13	25	37	22	1.91
10926562--10926720	53	3.0	52	85	3	194	37	12	22	27	1.90
10926871--10926937	27	2.4	29	80	11	70	23	19	28	28	1.98
10930946--10930978	16	2.0	17	88	5	50	48	0	3	48	1.17
10938328--10938370	21	2.0	22	90	4	70	30	34	23	11	1.90
10946601--10946676	37	2.1	37	97	0	143	27	11	27	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10948068--10948517	228	2.0	228	89	0	686	27	15	22	34	1.94
10950406--10950438	17	1.9	17	100	0	66	48	0	3	48	1.17
10952268--10952309	17	2.4	18	77	18	52	59	0	4	35	1.19
10961000--10961046	24	1.9	25	91	4	78	40	8	2	48	1.45
10986231--10986322	46	2.0	46	100	0	184	36	13	13	36	1.83
10987623--10987703	41	2.0	41	97	0	153	48	14	7	29	1.71
10990800--10990833	17	1.9	18	88	5	52	50	5	29	14	1.67
10991581--10991651	35	2.1	34	94	2	124	54	14	15	15	1.71
10997753--10997805	24	2.2	23	80	12	63	62	0	5	32	1.19
10997756--10997809	21	2.3	24	87	12	78	61	0	7	31	1.24
11006661--11006687	2	13.5	2	100	0	54	0	48	0	51	1.00
11030109--11030141	13	2.6	13	85	4	50	12	6	0	81	0.85
11031450--11031869	218	1.9	215	89	1	651	29	15	19	35	1.93
11031428--11031869	110	4.1	107	91	2	643	30	14	18	35	1.92
11032797--11032831	16	2.2	16	89	0	52	22	17	17	42	1.88
11043264--11043390	44	2.9	45	76	6	134	32	15	22	29	1.95
11046007--11046043	17	2.1	18	90	5	58	45	5	5	43	1.49
11047207--11047242	14	2.7	13	91	8	63	0	16	13	69	1.19
11048488--11048907	218	1.9	215	90	2	671	29	16	19	34	1.94
11048481--11048907	110	4.0	108	90	3	666	30	16	19	34	1.94
11049637--11049717	34	2.3	35	93	6	139	28	2	2	66	1.17
11049637--11049733	34	2.8	34	86	7	117	27	3	2	67	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11064675--11064709	13	2.7	13	95	0	61	34	17	25	22	1.96
11076071--11076139	30	2.3	30	87	2	95	46	17	14	21	1.84
11077030--11077145	34	3.5	31	78	15	117	43	0	12	43	1.43
11077208--11077601	126	3.1	125	85	3	508	37	15	16	30	1.90
11085565--11085614	25	2.0	25	96	0	91	22	24	28	26	1.99
11085593--11085827	42	5.5	44	75	10	188	22	16	25	35	1.95
11085592--11085825	85	2.8	84	86	1	317	22	16	25	35	1.94
11088172--11088939	397	1.9	396	82	5	942	34	12	17	34	1.88
11089674--11089854	51	3.3	57	81	12	236	44	6	19	30	1.75
11089830--11089854	6	4.2	6	100	0	50	68	0	16	16	1.22
11092189--11092232	20	2.2	21	88	8	65	9	22	0	68	1.18
11098056--11098184	2	65.5	2	94	3	226	0	51	0	48	1.00
11098642--11098722	37	2.2	37	81	12	89	58	2	0	39	1.12
11098872--11098937	24	2.9	22	70	18	53	51	4	1	42	1.31
11103133--11103329	41	4.8	41	92	5	317	28	20	22	27	1.99
11103544--11103641	33	2.9	33	84	7	108	30	10	22	36	1.87
11111780--11111874	41	2.5	37	79	17	120	47	2	6	44	1.40
11113328--11113913	150	4.0	148	88	3	849	22	26	18	32	1.97
11115581--11115637	28	1.9	29	83	16	73	59	1	35	3	1.25
11119571--11119820	137	1.8	136	81	5	308	48	18	9	24	1.77
11133406--11133668	50	5.3	49	70	3	211	22	26	22	28	1.99
11133406--11133714	100	3.1	100	93	1	512	22	25	22	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11133440--11133712	50	5.5	50	73	5	246	21	26	23	28	1.99
11145897--11145922	8	3.2	8	100	0	52	88	0	0	11	0.52
11149533--11149591	27	2.2	27	90	0	91	20	15	30	33	1.93
11153015--11153039	13	1.9	13	100	0	50	40	24	4	32	1.73
11159755--11159885	68	1.9	72	87	6	198	41	3	4	51	1.38
11159867--11159902	11	3.4	11	88	7	56	52	0	0	47	1.00
11159861--11159908	5	9.0	6	75	25	54	52	0	0	47	1.00
11163090--11163137	19	2.6	19	90	3	80	37	2	12	47	1.53
11168364--11168412	21	2.3	21	79	6	55	48	0	0	51	1.00
11168816--11168899	42	2.0	42	92	0	141	57	3	4	34	1.37
11181138--11181187	24	2.1	24	85	7	66	52	8	8	32	1.60
11188967--11189004	18	2.1	19	90	5	60	42	5	7	44	1.56
11189567--11189720	30	5.2	30	79	7	172	32	20	2	44	1.65
11189578--11189720	59	2.4	58	85	8	189	33	19	2	44	1.65
11190079--11190131	5	11.2	5	82	11	67	77	1	20	0	0.87
11190076--11190128	9	5.9	9	85	10	65	79	1	18	0	0.83
11190071--11190131	14	4.5	13	84	10	77	78	1	18	1	0.91
11190079--11190120	19	2.2	19	95	0	75	78	2	19	0	0.86
11190069--11190129	9	7.4	8	75	12	52	80	1	16	1	0.88
11190220--11190286	7	9.0	7	81	15	64	80	0	19	0	0.71
11190223--11190286	11	6.1	11	76	20	57	81	0	18	0	0.70
11190219--11190286	18	3.8	18	72	16	70	79	0	20	0	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11190219--11190286	21	3.4	21	75	20	74	79	0	20	0	0.73
11190541--11190587	15	3.1	15	79	14	60	76	0	23	0	0.78
11190557--11190607	13	3.9	13	80	14	61	78	0	21	0	0.75
11190541--11190608	6	11.2	6	71	20	52	77	0	22	0	0.76
11190545--11190611	26	2.6	25	81	15	82	76	0	23	0	0.79
11190551--11190606	12	4.6	12	78	12	60	76	0	23	0	0.78
11190924--11190965	20	2.2	20	87	12	61	40	9	11	38	1.75
11190991--11191024	18	1.9	18	94	5	61	35	11	11	41	1.78
11191140--11191181	18	2.3	18	83	0	57	42	9	11	35	1.74
11191210--11191488	17	15.6	18	71	13	143	32	10	11	45	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211