genome.fa.s14.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  145  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43202732--43202827	21	4.8	19	88	5	129	38	10	15	35	1.82
43202733--43202816	21	4.1	21	90	3	136	39	10	14	35	1.81
43202732--43202834	40	2.7	38	81	14	129	38	9	16	34	1.82
43202763--43202850	21	4.0	23	86	10	82	38	6	15	38	1.75
43202806--43202850	23	2.0	22	91	4	72	37	4	17	40	1.70
43202816--43202860	23	2.0	23	86	4	65	33	4	15	46	1.66
43203422--43203468	23	2.0	23	91	8	76	29	6	4	59	1.41
43204104--43204300	98	2.0	98	91	0	322	29	10	22	37	1.87
43212745--43212786	21	2.0	21	85	0	57	33	2	2	61	1.21
43216326--43217407	88	12.3	88	84	2	1312	24	25	23	26	2.00
43216525--43216660	43	3.1	43	68	12	123	22	27	23	26	1.99
43218651--43218701	7	7.0	7	76	14	50	15	11	0	72	1.12
43218671--43218700	13	2.3	13	94	0	51	16	10	0	73	1.09
43219566--43219595	15	2.0	15	93	0	51	3	23	0	73	0.98
43219572--43219642	20	3.6	19	75	11	63	8	12	2	76	1.12
43219603--43219669	28	2.4	28	78	16	77	11	8	5	73	1.25
43239780--43239830	14	3.5	14	80	19	68	31	9	5	52	1.58
43239791--43239842	16	3.4	16	80	20	74	32	9	5	51	1.58
43239780--43239842	30	2.1	30	100	0	126	31	9	6	52	1.59
43241049--43241103	28	2.0	28	100	0	110	50	3	21	23	1.64
43253302--43253580	113	2.5	114	79	4	305	34	18	21	25	1.96
43253526--43253631	54	2.0	54	88	0	158	35	18	20	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43253418--43253747	167	2.0	166	80	7	375	34	18	21	24	1.96
43253597--43253990	208	1.9	207	86	4	562	31	18	23	25	1.98
43254452--43254534	7	11.7	7	68	7	51	16	0	37	45	1.48
43254480--43254526	14	3.3	14	82	11	60	21	0	34	44	1.52
43254903--43254966	24	2.7	24	81	13	62	48	0	1	50	1.10
43255593--43255686	44	2.1	44	90	3	145	22	32	8	36	1.84
43257271--43257339	21	3.3	20	86	8	93	39	20	39	1	1.61
43257814--43257997	42	4.3	42	91	2	287	25	23	21	29	1.99
43257814--43257997	85	2.2	86	91	1	298	25	23	21	29	1.99
43263265--43263412	41	3.6	41	82	0	188	20	28	17	33	1.95
43264074--43264252	63	2.8	63	83	0	241	34	30	9	26	1.88
43264037--43264256	63	3.5	63	79	6	232	32	33	8	25	1.86
43274749--43274801	26	2.0	26	96	0	97	54	13	7	24	1.64
43276767--43276900	41	3.3	41	77	5	128	24	21	24	29	1.99
43277364--43277388	13	1.9	13	100	0	50	8	0	60	32	1.26
43277433--43277619	81	2.3	84	89	2	281	26	0	31	41	1.60
43277566--43277617	14	3.7	14	78	0	59	23	0	44	32	1.54
43277569--43277632	21	3.0	21	79	9	58	25	0	42	32	1.55
43277599--43277638	21	1.9	21	84	0	53	30	0	37	32	1.58
43278529--43278572	22	2.0	23	81	4	54	56	2	9	31	1.43
43282735--43282924	43	4.4	43	87	2	258	23	18	26	31	1.97
43282958--43283020	31	2.0	33	87	6	94	22	22	25	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43284456--43284485	2	15.0	2	100	0	60	50	0	0	50	1.00
43290712--43290851	41	3.4	40	79	4	147	22	20	27	30	1.98
43291245--43291277	14	2.3	15	94	5	59	30	0	33	36	1.58
43291413--43291457	14	3.3	14	81	6	56	17	0	44	37	1.49
43291413--43291454	13	3.2	13	86	10	50	16	0	45	38	1.48
43291496--43291547	7	7.4	7	80	0	59	19	0	46	34	1.50
43291496--43291555	21	2.8	20	73	9	57	21	0	45	33	1.52
43291662--43291716	7	7.9	7	83	0	56	25	0	45	29	1.54
43295131--43295264	19	6.8	19	89	3	178	40	14	7	38	1.74
43295708--43296020	44	7.1	45	65	13	123	29	23	19	27	1.98
43295593--43296222	132	4.8	132	94	0	1075	29	24	18	27	1.98
43302499--43302632	19	6.8	19	86	3	169	39	13	7	39	1.73
43302522--43302625	38	2.7	38	96	0	190	39	12	7	40	1.72
43302522--43302632	57	1.9	57	92	0	186	38	13	8	39	1.74
43305841--43305866	12	2.2	12	100	0	52	23	0	15	61	1.33
43306065--43306322	84	3.0	84	81	3	259	25	18	24	32	1.97
43306065--43306302	43	5.6	43	79	7	229	23	17	25	32	1.97
43306932--43306962	13	2.4	13	94	0	53	22	32	32	12	1.92
43311274--43311329	21	2.7	21	86	8	80	44	21	21	12	1.85
43321012--43321043	15	2.1	15	100	0	64	31	6	28	34	1.82
43322155--43322214	29	2.1	29	96	0	111	23	15	3	58	1.52
43322329--43322903	159	3.6	159	92	2	933	27	10	8	53	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43322331--43322903	317	1.8	313	91	2	916	27	10	8	53	1.65
43323057--43323095	20	2.0	20	90	5	62	69	10	0	20	1.17
43323136--43323212	6	12.5	6	81	9	75	0	41	2	55	1.13
43323136--43323281	60	2.5	56	79	13	136	1	35	1	61	1.13
43323205--43323261	10	5.7	10	85	0	78	0	28	0	71	0.86
43323205--43323281	20	3.8	20	76	6	75	2	29	0	67	1.04
43323197--43323281	30	2.8	30	96	0	152	2	30	0	67	1.04
43327042--43327084	13	3.1	14	84	12	54	60	0	0	39	0.97
43329544--43329639	3	32.0	3	86	0	93	56	1	9	33	1.38
43330693--43330720	5	5.6	5	100	0	56	17	17	0	64	1.30
43336908--43336938	16	1.9	16	93	0	53	32	0	9	58	1.31
43346605--43346801	29	6.8	29	82	5	227	20	27	14	37	1.92
43346605--43346812	88	2.4	87	82	8	260	21	26	14	37	1.92
43350021--43350099	27	2.9	27	84	0	104	18	17	22	40	1.91
43354552--43354793	58	4.2	58	78	6	247	21	26	14	38	1.92
43354552--43354808	29	8.8	29	79	4	214	21	26	14	38	1.91
43354600--43354818	117	1.9	117	82	3	280	21	24	13	40	1.89
43355016--43355063	23	2.1	23	96	0	87	37	6	4	52	1.46
43361081--43361194	42	2.6	43	80	9	106	29	24	14	30	1.95
43362452--43362807	43	8.3	43	82	3	358	32	28	16	21	1.95
43365481--43365523	21	2.1	21	91	4	70	20	4	51	23	1.66
43365490--43365534	20	2.2	21	84	4	56	17	4	60	17	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43366524--43366549	7	3.7	7	100	0	52	46	26	0	26	1.53
43366521--43366555	14	2.5	13	86	13	52	45	25	0	28	1.54
43366530--43366603	33	2.3	32	86	9	105	35	37	2	24	1.70
43366530--43366616	33	2.7	32	82	5	102	36	37	2	22	1.67
43367471--43367753	41	6.9	41	89	0	404	29	27	20	21	1.98
43373933--43373992	4	14.8	4	75	19	54	23	1	0	75	0.90
43373926--43373994	29	2.3	31	85	14	101	21	1	0	76	0.86
43373941--43373992	15	3.5	15	77	17	63	23	1	0	75	0.91
43375174--43375222	25	2.0	25	87	0	71	26	26	12	34	1.92
43383045--43383114	35	2.0	36	82	2	88	30	8	21	40	1.83
43387475--43387500	13	2.0	13	100	0	52	61	7	7	23	1.49
43388702--43388736	18	1.9	18	88	11	54	68	2	17	11	1.31
43391877--43392390	262	2.0	262	95	0	929	35	23	12	28	1.91
43393783--43393820	15	2.5	15	87	12	51	42	7	26	23	1.81
43394646--43394710	30	2.2	30	88	0	94	27	32	24	15	1.95
43395848--43396015	29	5.8	29	81	4	169	21	26	13	38	1.91
43397353--43397386	11	3.0	11	91	4	50	52	5	0	41	1.25
43399936--43399993	25	2.4	24	82	2	71	74	5	0	20	1.01
43399936--43400032	39	2.4	41	78	11	103	68	5	1	25	1.17
43399835--43400032	44	5.1	38	70	15	120	64	5	2	27	1.28
43400054--43400124	26	2.7	26	88	2	106	61	2	2	32	1.24
43400059--43400141	26	3.2	26	86	3	105	65	2	2	30	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43401677--43402154	44	10.6	44	71	10	304	29	21	19	30	1.97
43401707--43401973	140	1.9	139	81	2	320	29	21	18	30	1.97
43401710--43402168	181	2.5	181	87	2	634	29	20	18	31	1.97
43401677--43402111	96	4.8	94	74	11	316	29	20	19	30	1.97
43403040--43403093	5	10.8	5	74	21	51	0	16	0	83	0.65
43403045--43403100	11	5.2	10	83	12	67	1	16	0	82	0.76
43403038--43403100	21	3.0	21	84	9	76	1	15	0	82	0.74
43403039--43403100	6	10.8	6	72	16	51	1	16	0	82	0.75
43403181--43403213	14	2.3	15	89	5	50	24	33	15	27	1.95
43408353--43408601	125	2.0	125	91	0	399	29	16	22	30	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211