genome.fa.s14.2.7.7.80.10.50.1000.190.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  190  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56311659--56311735	39	2.0	39	97	0	145	22	23	20	33	1.97
56314367--56314405	20	2.0	20	89	0	60	15	17	28	38	1.91
56314731--56314815	38	2.2	39	87	2	127	27	12	20	40	1.89
56316277--56316301	2	12.5	2	100	0	50	48	0	52	0	1.00
56319641--56319878	48	5.0	48	84	2	289	35	18	20	25	1.95
56319817--56319928	57	2.0	56	89	1	170	35	25	17	21	1.95
56319892--56319967	39	1.9	39	91	0	125	31	18	26	23	1.97
56324220--56324301	7	10.9	7	79	13	67	24	4	0	70	1.06
56324226--56324294	4	16.5	4	73	21	54	24	4	0	71	1.05
56324217--56324294	17	4.9	16	75	17	65	24	3	0	71	1.02
56327112--56327355	48	4.9	48	79	9	247	34	22	19	22	1.96
56326971--56327310	105	3.3	103	86	2	434	36	22	18	22	1.95
56327510--56327592	26	3.2	26	65	13	71	51	14	0	33	1.42
56327491--56327598	52	2.1	52	91	0	171	50	13	0	36	1.43
56329680--56329714	2	17.5	2	100	0	70	0	51	0	48	1.00
56331176--56331260	38	2.2	38	87	2	125	40	20	12	27	1.89
56348539--56348563	2	12.5	2	100	0	50	52	0	48	0	1.00
56348738--56348874	57	2.4	56	78	6	141	24	21	11	43	1.85
56365849--56366084	69	3.4	70	82	4	257	25	20	17	36	1.94
56366598--56366638	21	2.0	21	85	4	57	24	29	17	29	1.97
56372595--56372714	43	2.8	43	75	13	129	25	21	25	27	1.99
56379952--56379987	10	3.8	9	92	7	54	88	8	2	0	0.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56379952--56379989	9	3.8	10	89	10	60	86	10	2	0	0.66
56380018--56380095	27	2.9	27	90	0	111	26	25	30	16	1.97
56380513--56380541	14	2.1	14	100	0	58	55	0	6	37	1.27
56381368--56381396	14	2.1	14	100	0	58	37	6	0	55	1.27
56381891--56381935	12	3.8	12	83	16	51	2	2	11	84	0.80
56381895--56381930	16	2.2	16	90	0	54	2	2	8	86	0.77
56386956--56387088	62	2.1	62	98	0	257	30	19	7	42	1.79
56388867--56388909	22	1.9	23	85	4	61	18	18	9	53	1.70
56409263--56409320	17	3.2	16	79	16	53	50	0	25	24	1.50
56409400--56409459	30	2.0	31	83	3	77	40	0	41	18	1.50
56417375--56417443	28	2.4	29	75	20	72	43	0	5	50	1.26
56423375--56423547	86	2.0	86	100	0	346	49	10	12	27	1.73
56424496--56424585	42	2.2	43	86	6	123	17	21	16	44	1.87
56424496--56424590	21	4.6	21	64	12	61	16	21	16	45	1.86
56426418--56426506	45	2.0	45	90	0	142	33	23	16	25	1.96
56426508--56426703	51	3.9	50	82	4	232	30	28	16	24	1.97
56426515--56426699	101	1.8	101	89	3	291	30	27	17	24	1.97
56431768--56431892	29	4.4	27	71	17	78	64	0	3	31	1.14
56432132--56432169	19	2.0	19	89	0	58	28	2	7	60	1.38
56432215--56432261	19	2.4	19	85	3	58	31	2	2	63	1.18
56432215--56432262	10	4.9	10	79	5	53	31	2	2	64	1.16
56433247--56433377	49	2.5	50	79	10	138	60	4	4	30	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56438037--56438066	4	7.5	4	92	0	51	30	0	23	46	1.52
56438912--56438961	20	2.4	22	80	10	59	38	2	4	56	1.30
56456279--56456320	13	3.2	13	86	6	57	78	2	16	2	0.96
56456282--56456316	18	2.0	17	88	5	52	80	2	14	2	0.95
56466408--56466441	17	2.0	17	88	11	52	50	0	0	50	1.00
56479936--56480117	91	2.0	91	84	2	240	29	13	23	33	1.93
56480935--56480993	28	2.2	26	84	6	73	49	3	16	30	1.63
56481319--56481407	30	2.8	33	83	10	105	33	5	12	48	1.64
56481340--56481422	30	2.8	30	90	0	130	32	4	14	48	1.65
56485501--56485559	13	4.5	13	76	0	64	33	5	25	35	1.78
56485496--56485546	26	2.0	26	92	0	84	31	7	27	33	1.85
56485753--56485798	24	1.9	24	86	0	65	52	2	0	45	1.13
56489009--56489097	30	2.8	31	88	6	110	33	6	12	47	1.68
56489030--56489112	30	2.8	30	90	0	130	30	7	15	46	1.73
56492965--56493101	41	3.3	41	86	3	159	31	20	20	27	1.97
56501746--56501789	22	2.0	22	81	4	52	54	0	13	31	1.39
56505832--56505860	8	3.8	8	90	9	51	34	0	0	65	0.93
56508637--56508755	43	2.8	43	84	2	141	34	24	15	26	1.94
56508875--56508969	31	3.1	31	86	3	129	47	18	7	26	1.75
56511487--56511516	6	4.8	6	95	4	51	70	0	0	30	0.88
56525454--56525489	18	2.0	18	89	10	56	61	2	2	33	1.25
56526424--56526523	27	3.6	28	71	21	75	31	4	2	63	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56537140--56537559	209	2.0	209	99	0	822	42	14	10	31	1.80
56537768--56537833	22	3.0	22	78	8	62	39	18	24	18	1.92
56538832--56538919	5	17.6	5	85	11	110	54	1	1	43	1.15
56538827--56538926	15	6.8	14	80	15	105	54	1	1	44	1.13
56539120--56539159	20	2.0	20	100	0	80	40	10	5	45	1.60
56539599--56539640	5	8.0	5	84	10	57	40	2	2	54	1.26
56539694--56539729	18	2.0	18	88	0	54	41	0	8	50	1.33
56541365--56541399	18	1.9	18	88	11	54	51	2	8	37	1.47
56542222--56542328	34	3.1	34	74	5	99	35	14	19	29	1.92
56542390--56542422	13	2.5	13	90	0	57	36	36	12	15	1.84
56542468--56542500	15	2.3	15	89	5	50	27	18	27	27	1.98
56542605--56542656	22	2.4	22	93	0	95	34	9	9	46	1.69
56545463--56545521	25	2.4	25	85	0	73	32	23	25	18	1.97
56548983--56549049	10	6.4	10	74	16	64	73	5	19	1	1.12
56549017--56549063	20	2.4	19	89	3	67	68	2	29	0	1.02
56551424--56551460	9	4.1	9	92	0	65	45	13	10	29	1.77
56554089--56554223	40	3.4	40	74	10	107	37	22	22	17	1.94
56554089--56554204	40	2.9	39	76	10	110	32	22	25	18	1.97
56554262--56554441	41	4.4	41	89	2	272	12	21	28	37	1.89
56554262--56554500	82	2.9	81	83	7	252	14	22	26	36	1.92
56554262--56554540	123	2.3	123	80	5	287	15	22	25	36	1.93
56554953--56554984	16	1.9	17	93	6	57	37	0	21	40	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56559344--56559390	23	2.0	23	95	0	85	44	21	2	31	1.64
56559341--56559393	16	3.3	16	76	15	56	43	22	1	32	1.64
56559379--56560012	34	19.4	33	67	19	203	44	12	1	41	1.52
56559487--56559582	30	3.3	30	66	16	85	39	10	2	47	1.49
56559479--56559582	25	3.9	25	71	20	77	40	11	1	46	1.51
56559555--56559657	22	4.9	22	70	20	76	47	11	1	38	1.51
56559460--56559754	56	5.0	56	85	12	328	44	10	2	41	1.53
56559560--56559762	64	3.2	65	90	4	319	45	11	2	39	1.56
56559747--56559784	7	5.1	7	87	12	58	44	26	0	28	1.54
56559742--56559802	16	3.8	16	83	16	90	44	24	0	31	1.54
56559708--56560118	9	48.3	9	67	20	95	44	15	1	38	1.56
56559742--56559802	23	2.5	24	89	10	97	44	24	0	31	1.54
56559998--56560048	16	3.1	16	81	10	66	45	23	1	29	1.64
56560086--56560118	16	2.1	16	94	0	57	51	18	0	30	1.46
56565527--56565697	66	2.6	65	84	4	209	40	18	28	12	1.88
56565676--56565719	21	2.1	21	86	0	61	34	20	43	2	1.64
56565688--56565759	21	3.4	21	80	0	81	34	15	44	5	1.70
56566117--56566421	43	7.1	42	75	5	177	24	20	29	24	1.99
56566117--56566421	86	3.5	85	80	7	278	24	20	29	24	1.99
56566352--56566444	43	2.2	42	86	1	123	25	30	22	21	1.99
56566352--56566463	42	2.6	43	82	1	118	23	29	24	23	1.99
56566559--56566601	22	2.0	22	90	0	68	44	27	18	9	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56578230--56578283	19	2.9	17	79	15	54	42	0	3	53	1.18
56580619--56580841	108	2.1	109	90	0	349	35	13	6	43	1.70
56581432--56581477	3	15.3	3	100	0	92	67	0	0	32	0.91
56581974--56582033	26	2.3	26	82	8	77	51	0	8	40	1.32
56581989--56582045	26	2.2	26	81	6	71	56	0	7	36	1.27
56582312--56582352	17	2.4	16	84	11	55	58	0	2	39	1.11
56583248--56583576	108	3.1	107	87	3	466	36	17	16	29	1.92
56583708--56583784	4	18.8	4	74	14	59	68	5	5	20	1.29
56583772--56583824	22	2.4	21	81	12	61	67	5	7	18	1.35
56583890--56583928	16	2.4	16	82	0	51	53	5	7	33	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211