genome.fa.s14.2.7.7.80.10.50.1000.161.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  161  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47457473--47457826	179	2.0	179	93	1	611	27	24	18	29	1.98
47457655--47457953	127	2.3	132	90	4	457	27	23	18	30	1.98
47457914--47458007	47	2.0	47	91	0	152	30	24	13	30	1.94
47457784--47458132	179	2.0	174	87	5	495	28	22	16	32	1.96
47458354--47458447	47	2.0	47	100	0	188	29	27	14	27	1.96
47458222--47458577	179	2.0	179	93	0	613	26	25	18	29	1.98
47458635--47461849	44	73.3	43	62	12	219	26	23	18	31	1.97
47459581--47459677	47	2.1	47	94	0	167	31	25	13	28	1.94
47459452--47459802	179	2.0	176	89	2	542	28	23	17	31	1.97
47459776--47459946	85	2.0	85	100	0	342	27	24	18	29	1.98
47459644--47460078	217	2.0	217	91	0	699	26	23	18	30	1.98
47459019--47460587	396	4.0	391	74	11	1178	27	23	18	31	1.97
47460373--47460462	47	1.9	47	95	0	162	31	24	14	30	1.95
47460241--47460770	172	3.0	177	91	3	863	27	22	17	31	1.97
47460546--47460634	47	1.9	47	93	2	153	32	23	13	30	1.93
47460592--47461821	132	9.4	132	86	2	1659	26	23	18	31	1.97
47461775--47461864	47	1.9	47	95	0	162	31	25	15	27	1.96
47461643--47462000	179	2.0	179	92	1	592	27	24	18	29	1.98
47461822--47462528	132	5.4	132	88	0	1020	27	24	17	30	1.98
47462485--47462578	47	2.0	47	95	0	170	30	26	13	28	1.94
47462350--47462703	179	2.0	179	90	2	568	27	24	16	31	1.96
47462529--47462971	132	3.4	132	91	0	690	26	24	18	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47462766--47464357	44	36.1	44	63	15	206	26	23	18	31	1.97
47462925--47463018	47	2.0	47	95	0	170	29	26	13	29	1.94
47462793--47463148	179	2.0	177	93	2	606	27	25	17	30	1.97
47462972--47463550	132	4.4	132	89	2	869	26	23	18	31	1.97
47463370--47463728	179	2.0	178	89	1	549	27	23	18	30	1.98
47463549--47464643	132	8.3	132	86	2	1382	26	23	17	32	1.97
47463549--47464640	396	2.8	394	85	1	1521	26	23	17	32	1.97
47464601--47464693	47	2.0	47	93	2	161	30	26	13	29	1.95
47464474--47464816	177	1.9	177	87	4	505	27	24	16	31	1.97
47464644--47465073	126	3.4	127	83	7	527	26	23	18	31	1.97
47465028--47465117	44	2.0	46	87	8	132	31	24	13	31	1.93
47464906--47465246	172	2.0	173	89	6	532	28	24	17	30	1.97
47465814--47465997	44	4.2	43	66	10	104	27	20	19	32	1.97
47465074--47466153	129	8.4	132	88	4	1517	26	23	18	31	1.98
47466114--47466203	47	1.9	47	90	0	144	32	26	13	27	1.94
47465978--47466328	179	2.0	179	87	1	515	29	24	16	30	1.96
47466154--47466596	132	3.4	131	91	1	679	26	23	18	31	1.98
47466550--47466646	47	2.2	42	83	10	115	27	27	14	29	1.95
47466550--47466640	44	2.0	44	89	6	137	29	26	14	29	1.95
47466418--47466765	172	2.0	179	89	5	550	27	25	17	30	1.97
47466597--47467556	132	7.4	131	86	3	1235	26	23	18	32	1.97
47466597--47467556	261	3.7	262	85	3	1258	26	23	18	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47467510--47467650	47	3.0	47	94	0	246	31	26	13	29	1.94
47467604--47467902	132	2.3	132	91	2	476	27	23	17	31	1.97
47467837--47467974	72	1.9	73	86	7	201	28	19	20	31	1.97
47468168--47468670	44	11.4	44	65	11	125	27	23	16	32	1.96
47467905--47468373	132	3.6	132	85	4	598	26	22	17	33	1.97
47468377--47468939	131	4.3	131	90	3	854	26	24	17	31	1.97
47468198--47468552	179	2.0	179	87	2	520	29	23	15	31	1.95
47468377--47468939	259	2.2	260	90	3	875	26	24	17	31	1.97
47468897--47468984	45	1.9	47	93	4	153	31	25	13	29	1.94
47468781--47469120	174	2.0	173	89	4	524	28	25	16	30	1.96
47468944--47471201	132	17.4	132	87	3	3100	25	24	19	31	1.98
47470334--47474403	44	92.2	44	63	10	444	26	23	18	31	1.98
47468944--47471201	659	3.5	656	86	4	3148	25	24	19	31	1.98
47471154--47471251	47	2.1	47	92	0	160	29	24	13	32	1.93
47471023--47471380	179	2.0	179	88	0	536	28	22	15	32	1.95
47471202--47471776	132	4.4	131	92	1	934	26	24	18	30	1.97
47471730--47471823	47	2.0	47	97	0	179	29	26	14	28	1.95
47471598--47471958	179	2.0	179	93	1	616	27	24	17	30	1.97
47471777--47472618	132	6.4	132	90	0	1290	25	23	19	31	1.98
47472569--47472665	47	2.1	47	92	0	158	29	24	13	31	1.93
47472437--47472794	179	2.0	179	92	1	592	27	24	17	31	1.97
47472616--47473190	132	4.4	132	93	1	956	27	24	17	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47473144--47473237	47	2.0	47	95	0	170	28	26	15	28	1.96
47473012--47473372	179	2.0	179	92	1	598	27	23	17	31	1.97
47473191--47474715	132	11.6	132	89	0	2221	25	23	19	31	1.98
47481231--47481260	11	2.7	11	100	0	60	73	0	0	26	0.84
47481691--47481745	19	2.7	21	83	11	87	36	10	10	41	1.75
47481668--47481733	23	3.0	22	75	20	66	37	15	7	39	1.75
47482110--47482199	42	2.2	42	93	2	155	47	8	15	27	1.75
47483183--47483276	30	3.2	27	77	15	89	32	4	1	61	1.22
47483183--47483268	29	2.9	29	80	13	86	31	4	1	62	1.23
47483242--47483275	11	3.1	11	91	0	50	32	0	0	67	0.91
47483203--47483385	20	9.3	19	68	17	79	33	2	2	61	1.22
47483242--47483354	40	2.8	39	72	13	97	32	2	2	61	1.23
47483349--47483385	18	2.0	19	89	5	58	35	0	2	62	1.10
47486376--47486660	50	5.6	50	85	3	311	23	29	20	26	1.99
47496893--47496930	14	2.7	15	88	8	53	42	5	13	39	1.66
47497012--47497083	36	2.0	36	84	10	94	36	5	4	54	1.43
47500094--47500127	16	2.1	16	94	0	59	52	0	35	11	1.38
47501438--47501495	31	1.9	30	89	10	91	63	10	12	13	1.51
47507090--47507130	21	2.0	20	85	4	55	26	19	19	34	1.96
47509434--47509477	22	2.0	23	81	4	54	40	13	9	36	1.76
47524083--47524124	15	2.9	14	76	16	50	64	0	0	35	0.94
47524078--47524116	14	2.9	14	85	11	55	69	0	0	30	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47524066--47524136	27	2.6	27	75	4	70	59	0	0	40	0.98
47524355--47524392	19	2.0	19	100	0	76	47	5	15	31	1.68
47530793--47530861	35	2.0	34	88	5	104	40	4	7	47	1.51
47531151--47531222	37	1.9	37	100	0	144	40	15	5	38	1.70
47532498--47532603	44	2.4	44	93	1	176	43	29	6	20	1.77
47532875--47532913	14	2.8	14	84	0	51	20	7	51	20	1.72
47536611--47536668	19	2.9	19	82	12	55	72	1	0	25	0.94
47541193--47541263	25	2.9	25	83	4	83	39	18	21	21	1.93
47544272--47544324	28	2.0	26	85	7	70	28	7	1	62	1.33
47544311--47544389	27	3.0	27	75	12	76	63	2	3	30	1.25
47548379--47548412	17	2.0	17	88	0	50	41	32	8	17	1.80
47552652--47552705	24	2.2	24	83	6	65	55	5	3	35	1.41
47557522--47557576	27	2.0	27	86	6	76	30	30	10	27	1.91
47562072--47562187	50	2.3	50	78	8	128	29	25	25	19	1.99
47562457--47562495	12	3.2	12	85	0	51	51	5	23	20	1.67
47575458--47575673	45	4.8	45	87	3	278	26	15	23	34	1.94
47589367--47589471	53	2.0	53	86	3	149	25	12	19	42	1.86
47603299--47603443	41	3.5	41	83	0	173	34	24	21	19	1.96
47606664--47606702	20	2.0	20	85	10	53	17	20	5	56	1.60
47606944--47607068	50	2.5	50	82	0	151	20	25	22	31	1.98
47614137--47614174	15	2.5	15	95	0	67	55	0	23	21	1.44
47614359--47614395	15	2.5	15	95	0	65	56	0	21	21	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47616335--47616364	6	4.8	6	95	4	51	80	0	20	0	0.72
47617707--47617746	20	2.0	20	90	0	62	35	0	2	62	1.09
47623831--47623867	18	2.0	19	89	5	58	32	16	5	45	1.70
47630572--47630654	41	2.0	41	100	0	166	43	7	12	37	1.70
47630585--47630672	41	2.1	41	83	4	106	51	6	13	28	1.67
47634199--47634231	16	2.0	17	94	5	59	39	0	0	60	0.97
47634215--47634276	11	5.5	11	79	9	72	37	4	0	58	1.20
47634198--47634314	33	3.1	39	80	15	147	35	4	0	59	1.23
47634297--47634336	21	1.9	21	84	0	53	37	2	2	57	1.26
47634852--47634897	18	2.5	19	72	10	51	43	4	32	19	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211