genome.fa.s14.2.7.7.80.10.50.1000.185.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  185  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54741340--54741390	25	2.0	25	96	0	93	50	7	17	23	1.72
54741337--54741425	30	3.1	30	84	12	116	42	6	24	25	1.79
54745532--54745565	16	2.0	18	88	11	54	26	5	11	55	1.58
54746314--54746366	24	2.2	24	83	6	63	52	7	5	33	1.53
54770197--54770427	102	2.3	102	92	0	381	19	20	28	31	1.97
54778968--54779016	22	2.2	22	85	0	62	28	30	6	34	1.82
54778976--54779019	22	2.0	22	90	0	70	27	27	6	38	1.82
54788546--54788584	20	2.0	20	94	0	69	20	23	20	35	1.96
54799318--54799342	11	2.3	11	100	0	50	16	20	16	48	1.82
54827250--54827305	27	2.1	27	100	0	112	32	16	21	30	1.95
54830624--54830703	42	1.9	42	94	0	142	22	22	8	46	1.79
54834846--54834908	21	2.9	22	81	11	69	68	0	12	19	1.21
54834870--54834919	21	2.5	20	83	9	57	68	0	10	22	1.19
54834853--54834917	21	3.1	21	80	10	55	70	0	10	18	1.15
54835086--54835169	42	2.0	42	95	0	150	23	22	8	45	1.79
54835099--54835188	23	4.1	23	70	11	89	21	25	6	46	1.75
54836391--54836637	42	5.8	42	84	5	302	20	21	21	37	1.95
54836391--54836637	85	2.9	85	84	4	320	20	21	21	37	1.95
54836956--54837026	21	3.4	21	73	11	65	2	43	18	35	1.65
54842596--54842729	25	5.4	23	72	15	83	34	3	21	40	1.71
54842587--54842727	34	4.2	34	66	15	105	34	3	21	39	1.71
54842587--54842628	18	2.5	16	88	7	57	38	2	21	38	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54842686--54843531	9	94.2	9	80	7	855	34	1	14	49	1.53
54842643--54842898	63	4.2	59	79	6	187	35	1	18	44	1.59
54846063--54846617	261	2.1	261	91	2	900	35	20	17	26	1.95
54846455--54846692	115	2.1	114	88	3	354	32	18	18	29	1.95
54847160--54847234	7	10.9	7	80	8	64	45	30	2	21	1.66
54847153--54847234	21	3.9	19	77	16	83	46	29	2	21	1.64
54847160--54847234	14	5.5	13	79	14	71	45	30	2	21	1.66
54847366--54847413	20	2.4	21	86	6	64	52	33	0	14	1.42
54847564--54847605	22	1.9	22	90	0	66	33	45	2	19	1.63
54848138--54848246	41	2.7	41	94	0	182	26	30	20	22	1.98
54848264--54848413	72	2.1	72	82	2	176	30	24	21	23	1.99
54861294--54861347	24	2.4	21	72	21	56	31	5	5	57	1.45
54865998--54866033	18	2.0	18	100	0	72	33	38	22	5	1.77
54866346--54866405	30	1.9	32	83	6	79	46	1	3	48	1.28
54866332--54866405	35	2.2	33	77	15	80	48	1	2	47	1.24
54869652--54869712	30	2.0	31	90	3	97	24	21	26	27	1.99
54869925--54870267	27	12.7	27	81	8	333	17	18	20	43	1.89
54869926--54870255	81	4.1	82	86	4	404	17	18	20	43	1.88
54869944--54870267	108	3.0	106	85	7	420	17	18	20	43	1.88
54877695--54877773	38	2.1	38	97	0	149	31	12	13	41	1.82
54888102--54888134	15	2.2	15	89	10	50	27	0	3	69	1.03
54889161--54889243	38	2.2	37	77	12	89	44	4	21	28	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54889346--54889455	23	5.0	23	83	9	142	20	20	23	36	1.95
54889823--54889849	3	9.0	3	100	0	54	33	0	0	66	0.92
54899993--54900022	1	30.0	1	93	0	51	0	0	3	96	0.21
54901565--54901591	12	2.2	12	100	0	54	44	18	22	14	1.86
54902010--54902055	14	3.2	14	80	14	58	54	0	2	43	1.12
54910558--54910645	18	4.9	18	87	0	131	32	15	22	28	1.95
54910558--54910645	36	2.4	36	94	0	149	32	15	22	28	1.95
54918585--54918656	34	2.1	34	97	0	135	33	25	1	40	1.64
54919620--54919645	5	5.2	5	100	0	52	23	0	0	76	0.78
54927976--54928052	26	3.0	26	84	0	100	40	24	20	14	1.90
54928227--54928655	27	15.9	27	82	4	463	18	19	18	43	1.88
54936195--54936313	38	3.2	38	76	8	102	42	21	7	29	1.80
54936481--54936602	41	3.0	42	90	3	194	23	28	20	27	1.99
54939753--54939813	25	2.5	25	78	10	72	31	1	8	59	1.37
54940149--54940193	14	3.5	14	77	22	62	44	8	8	37	1.67
54940131--54940205	24	3.2	24	92	1	116	48	8	5	38	1.56
54960213--54960293	37	2.2	37	95	2	146	24	18	12	44	1.84
54978062--54978096	18	1.9	18	88	0	52	17	0	22	60	1.37
54979372--54979430	17	3.6	17	76	19	63	52	0	1	45	1.10
54980022--54980099	40	2.0	40	82	5	95	47	10	1	41	1.46
54980651--54980708	27	2.3	24	78	18	73	56	0	3	39	1.16
54984917--54985013	41	2.4	41	84	3	117	26	18	16	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54985113--54985156	16	2.6	17	82	7	63	40	2	22	34	1.67
54996154--54996208	26	2.2	25	81	9	67	18	1	16	63	1.39
54999113--54999321	92	2.3	91	85	5	269	45	3	3	46	1.39
54999413--54999456	16	2.8	16	83	13	56	45	0	2	52	1.13
54999388--54999703	157	2.0	157	95	0	562	47	4	3	44	1.41
54999556--54999590	18	2.0	17	88	5	52	45	0	0	54	0.99
54999826--54999861	16	2.2	16	100	0	72	38	36	0	25	1.56
55003028--55003056	14	2.0	15	93	6	51	44	0	0	55	0.99
55005151--55005256	52	2.0	54	94	3	189	46	5	14	33	1.68
55006168--55006237	31	2.3	31	85	2	88	44	14	8	32	1.75
55012769--55012817	21	2.3	21	83	13	57	38	14	4	42	1.64
55020463--55020496	2	17.0	2	100	0	68	50	0	0	50	1.00
55021201--55021250	24	2.1	24	85	10	68	50	10	14	26	1.73
55023784--55023826	21	2.1	20	82	4	50	30	2	6	60	1.35
55031827--55031884	29	2.0	29	96	0	107	27	15	24	32	1.95
55034679--55034726	18	2.6	19	77	12	55	62	0	2	35	1.07
55041712--55041972	138	1.9	138	93	0	450	28	12	18	40	1.87
55044416--55044461	24	1.9	24	81	0	56	50	4	8	36	1.53
55044614--55044660	20	2.2	20	85	14	60	31	4	0	63	1.13
55047347--55047395	18	2.7	18	81	6	55	61	6	0	32	1.21
55047434--55047589	75	2.1	75	92	0	258	25	14	17	42	1.86
55049954--55050018	31	2.1	31	82	0	76	44	10	12	32	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55052868--55052993	43	2.9	45	76	17	149	31	26	17	23	1.97
55055533--55055575	22	2.0	22	90	4	70	58	2	9	30	1.42
55057535--55058510	44	22.2	45	77	5	893	30	26	15	27	1.96
55057535--55058512	132	7.4	132	88	2	1322	29	26	15	28	1.96
55070334--55070376	22	2.0	22	90	4	70	58	2	9	30	1.42
55076709--55076764	22	2.5	22	82	5	69	37	17	12	32	1.88
55080923--55080955	15	2.2	15	89	10	50	66	0	0	33	0.92
55085416--55085471	26	2.2	26	86	0	76	28	17	14	39	1.89
55090620--55090657	18	2.1	19	85	5	51	15	18	0	65	1.27
55091434--55091462	7	4.1	7	100	0	58	41	0	0	58	0.98
55094587--55094637	23	2.2	23	89	0	75	27	7	21	43	1.80
55095680--55095734	23	2.3	24	81	3	67	40	0	7	52	1.29
55102705--55102757	22	2.4	22	78	6	63	62	1	0	35	1.06
55102718--55102765	22	2.0	22	84	11	60	68	2	2	27	1.11
55103332--55103391	27	2.2	27	96	0	111	30	21	33	15	1.94
55103781--55103843	19	3.3	19	68	0	63	46	3	9	41	1.52
55104520--55104576	27	2.1	27	96	0	105	12	35	22	29	1.91
55104637--55104700	27	2.4	27	86	0	83	48	1	10	39	1.48
55106432--55106505	24	3.2	24	70	14	75	52	4	5	37	1.43
55106430--55106519	44	2.0	44	89	0	135	53	4	5	36	1.45
55106812--55106861	23	2.1	23	81	7	55	42	2	6	50	1.38
55114939--55115084	57	2.4	59	78	8	152	25	26	21	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55116251--55116361	9	12.6	8	76	18	73	62	1	2	33	1.20
55116269--55116360	17	5.4	16	76	18	80	61	2	1	34	1.15
55116197--55116366	20	9.5	17	72	19	98	62	2	2	31	1.25
55116236--55116366	16	7.5	16	76	20	97	61	2	2	34	1.21
55116401--55116442	21	2.0	21	85	4	57	69	16	0	14	1.20
55118790--55118871	20	4.1	21	81	12	93	59	2	1	36	1.18
55118791--55118871	29	2.8	29	82	16	112	59	2	1	37	1.19
55118795--55118895	48	2.1	48	85	9	134	63	3	0	31	1.19
55118795--55118884	10	9.4	9	75	8	72	62	3	1	33	1.19
55119400--55119441	22	1.9	22	90	9	68	33	0	4	61	1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211