genome.fa.s14.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  111  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31293412--31293452	22	1.9	21	85	5	55	36	31	0	31	1.58
31294086--31294124	19	2.1	19	85	0	51	38	2	0	58	1.12
31299631--31299778	72	2.0	73	92	1	244	40	11	14	33	1.82
31301740--31301783	22	2.0	22	95	4	81	40	9	18	31	1.81
31314953--31315222	130	2.1	130	90	2	427	29	12	12	45	1.79
31320169--31320194	6	4.3	6	100	0	52	84	0	0	15	0.62
31322888--31322991	29	3.6	29	71	6	93	36	20	17	25	1.94
31323015--31323121	52	2.1	52	100	0	214	20	29	13	36	1.90
31326312--31326504	50	3.8	50	87	0	260	21	29	21	26	1.99
31330837--31330872	5	6.8	5	87	12	54	77	0	0	22	0.76
31335470--31335513	22	2.0	22	95	0	79	47	4	2	45	1.35
31337817--31337985	43	4.0	43	75	9	157	33	26	17	22	1.96
31344758--31344862	29	3.6	29	74	6	104	34	20	17	27	1.95
31346677--31346902	40	5.7	40	87	4	262	25	22	26	25	2.00
31346730--31346935	80	2.6	79	81	9	197	27	20	26	26	1.99
31351976--31352015	4	10.0	4	100	0	80	75	0	0	25	0.81
31352439--31352486	3	16.0	3	100	0	96	33	0	0	66	0.92
31358177--31358248	35	2.1	35	84	5	92	37	8	2	51	1.47
31358408--31358452	23	1.9	24	86	4	65	24	2	0	73	0.95
31358796--31358825	13	2.3	13	94	0	51	63	0	0	36	0.95
31358798--31358836	19	2.1	18	90	4	60	64	0	2	33	1.08
31363057--31363262	111	1.9	111	89	0	322	31	15	22	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31363970--31363999	15	2.0	15	93	0	51	50	6	6	36	1.55
31365617--31365670	28	2.0	26	89	7	81	50	0	1	48	1.11
31366275--31366315	22	1.9	22	85	5	57	53	0	0	46	1.00
31372402--31372462	21	2.9	21	85	4	70	21	22	40	14	1.90
31377843--31377897	27	2.0	27	89	0	83	41	1	12	43	1.53
31379550--31379942	54	7.3	54	82	3	384	26	21	15	36	1.93
31379550--31379933	161	2.4	162	83	3	470	26	21	15	36	1.93
31379550--31379940	108	3.6	108	81	6	452	26	21	15	36	1.93
31379564--31379972	215	1.9	215	82	3	509	26	21	15	36	1.93
31379978--31380130	23	6.6	22	67	14	85	37	20	9	32	1.85
31379981--31380103	47	2.6	47	88	0	183	40	18	8	32	1.80
31379981--31380201	24	9.4	24	71	10	93	38	18	9	33	1.82
31380091--31380137	22	2.1	22	96	0	85	34	25	10	29	1.90
31380074--31380239	72	2.4	69	79	5	181	37	19	10	33	1.85
31380074--31380239	70	2.4	68	80	7	188	37	19	10	33	1.85
31380618--31380644	14	1.9	14	100	0	54	55	7	0	37	1.28
31381773--31381811	19	2.1	19	95	4	71	43	10	17	28	1.82
31385206--31385259	22	2.5	21	93	3	90	50	7	0	42	1.30
31385206--31385266	21	2.8	20	83	9	68	52	6	0	40	1.27
31385812--31385985	93	1.9	94	85	3	244	44	8	16	31	1.77
31386715--31386760	19	2.3	20	77	3	58	58	13	0	28	1.35
31386704--31386760	19	3.1	19	73	11	57	63	10	0	26	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31386849--31386883	14	2.5	14	90	0	52	51	5	8	34	1.56
31392734--31392800	18	3.5	18	68	11	53	52	0	2	44	1.16
31395197--31395244	3	16.0	3	100	0	96	66	0	0	33	0.92
31395709--31395872	17	9.8	16	69	18	84	44	11	10	32	1.76
31395741--31395983	18	13.9	18	69	14	152	44	10	12	32	1.77
31395740--31395901	17	9.1	20	72	17	80	45	10	11	33	1.74
31395916--31395971	17	3.2	17	69	14	51	41	5	14	39	1.68
31395825--31395937	55	2.1	55	85	6	149	41	11	14	32	1.81
31396268--31396309	5	8.2	5	84	5	57	61	0	0	38	0.96
31396504--31396545	17	2.5	17	78	17	52	0	21	0	78	0.75
31396491--31396550	28	2.2	27	82	11	70	0	18	0	81	0.69
31396604--31396640	19	1.9	19	88	0	56	2	27	40	29	1.70
31396801--31396864	25	2.5	25	85	12	78	3	35	0	60	1.12
31396989--31397041	22	2.4	22	73	17	56	0	16	11	71	1.13
31397352--31397433	30	2.8	30	84	1	121	42	2	20	34	1.65
31397669--31398540	76	11.2	78	85	6	929	36	19	16	27	1.93
31397683--31398540	155	5.5	157	82	7	923	35	19	17	27	1.94
31399391--31399442	12	4.5	11	85	4	50	3	3	7	84	0.85
31399390--31399424	18	1.9	18	88	0	52	8	5	5	80	1.03
31399409--31399443	17	2.1	17	89	10	54	0	0	11	88	0.51
31399409--31399443	14	2.6	13	90	4	52	0	0	11	88	0.51
31399409--31399446	13	2.9	13	88	7	51	0	0	13	86	0.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31401429--31401650	107	2.1	107	94	0	390	51	11	18	18	1.75
31412449--31412633	79	2.3	82	83	7	229	24	27	22	24	2.00
31412430--31412633	40	5.1	40	81	8	229	24	27	22	25	2.00
31415015--31415039	11	2.3	11	100	0	50	28	12	32	28	1.92
31416552--31416804	18	14.4	17	72	18	157	43	11	13	31	1.80
31416520--31416804	35	8.2	35	74	12	214	43	11	12	31	1.80
31416552--31416796	17	13.9	17	71	15	167	44	12	13	30	1.80
31417297--31417357	18	2.8	23	72	25	69	0	22	0	77	0.78
31417587--31417648	7	9.0	7	75	3	54	0	25	0	74	0.82
31417587--31417649	14	4.6	14	80	4	65	0	26	0	73	0.84
31417756--31417788	9	3.8	9	88	4	50	0	21	0	78	0.75
31418972--31419016	21	2.1	21	84	8	56	42	0	0	57	0.98
31419097--31419130	17	1.9	18	88	5	52	55	0	5	38	1.24
31423120--31423272	42	3.6	42	83	1	164	15	18	18	47	1.83
31423120--31423270	21	7.2	21	67	4	81	14	19	19	47	1.83
31426273--31426313	21	2.0	21	95	0	73	41	0	9	48	1.36
31431657--31431826	92	1.8	92	83	5	227	24	17	24	32	1.97
31434360--31434401	19	2.3	18	80	11	50	73	4	19	2	1.12
31448703--31448736	5	6.8	5	93	0	50	41	11	20	26	1.87
31449325--31449457	66	2.0	66	89	4	207	46	19	24	9	1.79
31452621--31452649	5	5.8	5	100	0	58	41	0	17	41	1.49
31455881--31455991	51	2.1	51	85	6	143	27	19	8	44	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31456397--31456743	173	2.0	173	95	0	622	31	17	25	25	1.97
31458492--31458676	79	2.3	81	84	7	236	25	27	22	24	2.00
31458492--31458676	40	4.7	40	83	7	234	25	27	22	24	2.00
31466164--31466346	40	4.7	40	80	10	216	25	27	22	24	2.00
31471894--31471926	13	2.5	13	95	5	57	9	0	15	75	1.03
31482583--31482624	21	2.0	21	95	0	75	42	7	7	42	1.59
31486674--31486749	38	1.9	38	84	5	98	57	7	17	17	1.62
31492805--31493224	44	9.5	44	77	7	397	27	16	25	29	1.97
31492805--31493211	132	3.1	132	94	0	697	28	15	26	28	1.96
31493258--31493463	44	4.7	44	83	5	265	24	18	28	28	1.98
31493205--31493527	132	2.4	132	71	15	322	26	22	26	25	2.00
31493770--31493874	44	2.4	44	83	3	131	26	20	21	30	1.98
31494306--31494348	20	2.1	21	95	4	79	37	9	13	39	1.78
31494305--31494359	20	2.8	19	81	5	74	36	9	16	38	1.80
31496428--31496507	42	1.9	42	87	5	117	45	21	13	20	1.85
31498006--31498034	14	2.0	15	93	6	51	27	6	20	44	1.77
31499184--31499307	43	2.9	43	81	11	146	20	20	28	30	1.98
31506016--31506091	28	2.7	28	81	0	89	27	21	21	30	1.98
31507538--31507632	45	2.1	45	88	3	147	27	20	23	29	1.98
31510265--31510320	29	1.9	29	85	0	76	41	17	14	26	1.88
31510754--31510810	26	2.2	26	81	9	62	40	0	15	43	1.47
31510837--31511214	104	3.6	104	86	7	509	26	0	13	59	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31510837--31511214	215	1.8	201	85	7	522	26	0	13	59	1.38
31511203--31511240	20	2.0	20	84	5	51	18	5	7	68	1.34
31513763--31513871	48	2.3	48	87	3	148	46	7	10	35	1.65
31518264--31518291	6	4.7	6	100	0	56	82	0	17	0	0.68
31520778--31520845	32	2.1	33	83	8	86	14	14	22	48	1.80
31523046--31523079	16	2.1	16	88	0	50	64	5	23	5	1.38
31528705--31528825	37	3.2	37	75	20	119	75	5	10	8	1.19
31528722--31528750	6	4.8	6	100	0	58	86	0	13	0	0.58
31528705--31528768	18	3.6	18	73	12	60	78	6	9	6	1.10
31528734--31528815	32	2.5	32	74	16	87	73	6	10	9	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211