genome.fa.s14.2.7.7.80.10.50.1000.164.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  164  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48403976--48404432	184	2.5	182	85	3	596	31	20	21	27	1.98
48403989--48404243	140	1.8	139	78	4	289	29	20	22	27	1.99
48404169--48404435	139	1.9	137	81	9	319	30	20	21	27	1.98
48404313--48404520	89	2.3	89	80	6	226	31	16	25	27	1.96
48410718--48410803	43	2.0	43	97	0	163	33	9	26	30	1.88
48414702--48414741	21	1.9	21	84	0	53	12	2	30	55	1.50
48415221--48415440	54	4.1	53	77	8	196	37	15	27	19	1.92
48415469--48415608	61	2.3	59	89	4	210	20	12	27	39	1.88
48432593--48432694	49	2.1	50	92	1	170	41	5	20	32	1.76
48437316--48437354	19	2.1	18	85	9	51	61	2	5	30	1.31
48442319--48442358	20	2.0	20	90	0	62	27	12	0	60	1.33
48467401--48467425	11	2.3	11	100	0	50	40	0	24	36	1.55
48470056--48470322	43	6.3	43	88	0	358	26	33	17	23	1.96
48473768--48473815	20	2.3	21	82	13	64	22	2	43	31	1.65
48473783--48473821	20	2.0	20	100	0	78	20	5	46	28	1.72
48474853--48474906	28	1.9	28	88	0	81	42	37	0	20	1.52
48474883--48475058	89	2.0	89	87	0	253	43	27	1	27	1.64
48475085--48475128	7	6.3	7	83	0	61	27	52	0	20	1.47
48475159--48475220	22	2.8	21	76	13	54	43	22	0	33	1.54
48475483--48475520	20	2.0	18	90	10	58	60	5	7	26	1.46
48475487--48475528	20	2.2	19	86	4	57	61	4	9	23	1.45
48475535--48475809	41	6.7	41	88	0	406	30	24	21	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48476464--48476529	26	2.5	26	97	0	123	36	27	19	16	1.93
48476955--48476984	10	3.0	10	95	0	51	23	10	26	40	1.86
48480858--48481314	47	9.6	47	91	0	644	32	8	29	29	1.87
48480858--48481314	49	9.6	49	91	2	695	32	8	29	29	1.87
48490474--48490511	18	2.1	18	90	0	58	34	5	2	57	1.35
48490838--48490862	9	2.8	9	100	0	50	44	0	0	56	0.99
48497305--48497400	31	3.1	31	93	3	165	31	10	13	44	1.77
48497953--48498060	11	10.9	10	74	13	64	72	12	12	1	1.21
48497981--48498090	11	10.4	11	71	13	79	71	10	15	1	1.21
48497981--48498058	20	3.8	21	75	11	81	73	11	14	1	1.17
48497953--48498049	9	10.0	9	72	19	63	73	13	11	2	1.19
48497951--48498110	51	3.2	49	80	13	180	71	11	14	1	1.22
48502595--48502690	31	3.1	31	95	3	174	31	9	13	45	1.75
48502999--48503056	29	2.1	27	81	18	66	24	5	1	68	1.19
48505567--48505634	21	3.1	21	83	12	68	79	13	7	0	0.93
48505567--48505622	20	2.8	20	83	2	67	80	12	7	0	0.90
48506048--48506128	38	2.1	39	93	2	137	18	17	25	38	1.92
48506128--48506423	42	7.2	42	86	2	350	22	19	21	35	1.96
48506128--48506372	83	2.9	83	90	0	373	24	20	21	33	1.97
48507310--48507546	124	1.9	123	85	4	325	41	4	10	43	1.58
48507477--48507538	31	2.0	31	81	3	72	33	4	8	53	1.52
48507682--48507716	6	5.8	6	100	0	70	48	0	51	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48511130--48511169	20	1.9	20	85	10	53	35	20	15	30	1.93
48513837--48513889	18	2.9	18	80	2	61	41	45	1	11	1.51
48513999--48514040	9	4.7	9	87	0	57	23	11	19	45	1.83
48542508--48542539	17	1.9	16	93	6	55	15	18	37	28	1.92
48543318--48543510	99	1.9	99	94	0	341	26	21	25	26	1.99
48550016--48550253	86	2.8	86	81	1	271	32	10	15	41	1.81
48549994--48550251	87	3.0	85	77	5	266	31	12	14	41	1.82
48550344--48550567	113	2.0	113	97	0	421	31	17	17	32	1.94
48553178--48553286	53	2.1	53	94	0	191	40	9	17	33	1.81
48555187--48555212	11	2.4	11	100	0	52	26	7	38	26	1.83
48558858--48558882	7	3.6	7	100	0	50	24	28	0	48	1.52
48559772--48561969	737	3.0	733	90	3	3392	36	13	18	31	1.90
48566944--48567141	45	4.4	44	83	7	222	35	26	14	23	1.93
48566944--48567192	90	2.8	90	82	5	274	34	25	14	25	1.93
48567948--48568001	18	3.1	18	76	12	58	18	37	3	40	1.69
48568928--48568965	16	2.4	16	82	8	51	57	5	0	36	1.21
48571184--48571221	18	2.2	17	86	9	51	23	7	0	68	1.16
48572851--48572890	19	2.1	19	85	0	53	37	0	5	57	1.21
48573992--48574024	16	2.0	17	88	5	50	57	0	3	39	1.14
48575456--48575498	21	2.0	22	86	4	61	27	2	11	58	1.46
48575914--48575953	13	3.2	12	89	7	53	52	7	0	40	1.30
48584080--48584314	50	4.6	50	73	13	142	23	26	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48589583--48589683	49	2.1	49	92	0	166	21	17	10	49	1.77
48597151--48597334	40	4.6	39	83	6	203	24	22	27	25	2.00
48597151--48597332	78	2.3	80	83	6	228	24	23	27	24	2.00
48605100--48605324	40	5.7	40	85	5	287	24	22	28	25	1.99
48609985--48610101	62	1.9	59	86	5	162	42	4	3	49	1.39
48616920--48617230	30	10.4	30	81	0	273	19	16	21	42	1.89
48616940--48617221	120	2.3	120	94	0	501	20	17	20	41	1.90
48619384--48619608	29	7.7	30	83	3	244	39	23	16	20	1.92
48619365--48619608	59	4.2	59	80	5	273	39	23	17	19	1.92
48619407--48619608	88	2.3	88	85	4	273	41	23	16	18	1.90
48627095--48627127	15	2.3	15	89	5	50	30	9	6	54	1.56
48628759--48628853	45	2.1	45	92	0	163	26	18	24	30	1.98
48633170--48633210	21	2.0	21	85	0	55	36	17	12	34	1.87
48636879--48636915	17	2.2	17	90	0	56	24	8	5	62	1.44
48637085--48637132	24	2.0	24	88	8	71	45	22	2	29	1.64
48639887--48639915	14	2.1	14	100	0	58	58	27	0	13	1.36
48642821--48642864	23	1.9	22	82	17	54	36	25	0	38	1.56
48643008--48643190	50	3.6	51	77	10	189	31	26	17	24	1.97
48643007--48643189	101	1.8	101	86	4	271	32	25	17	24	1.97
48653351--48653406	22	2.5	23	82	2	69	51	1	1	44	1.22
48653382--48653421	16	2.5	16	91	0	62	47	2	7	42	1.45
48653432--48653571	59	2.4	59	98	0	271	39	4	9	47	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48653553--48653589	9	4.1	9	100	0	74	32	0	10	56	1.34
48653686--48653731	24	1.9	24	86	8	67	63	2	0	34	1.07
48662304--48662391	17	4.8	19	73	19	62	52	2	2	43	1.26
48662304--48662412	39	3.0	37	80	15	104	53	2	1	42	1.26
48662338--48662395	17	3.6	16	75	15	66	56	1	1	39	1.19
48662330--48662412	38	2.1	41	82	10	102	53	3	1	42	1.26
48664266--48664315	25	2.0	25	92	0	82	34	18	10	38	1.84
48666703--48667349	47	13.6	49	90	3	979	32	8	29	29	1.86
48666703--48667349	96	6.8	96	90	4	972	32	8	29	29	1.86
48677783--48677856	36	2.1	36	100	0	148	24	27	18	29	1.98
48684195--48684243	23	2.1	23	92	0	80	20	20	16	42	1.89
48686652--48686705	13	4.2	13	69	21	51	31	14	14	38	1.87
48688484--48688513	6	5.0	6	91	0	51	70	13	0	16	1.18
48691602--48691641	20	2.0	20	85	0	53	42	20	7	30	1.79
48695890--48695926	13	2.7	14	83	8	58	29	29	16	24	1.96
48698875--48698905	6	5.2	6	92	0	53	16	12	0	70	1.16
48698875--48698923	18	2.7	18	90	0	71	14	14	4	67	1.37
48708624--48708743	49	2.4	49	80	4	134	31	21	23	23	1.98
48710869--48710917	10	4.6	11	78	12	50	22	6	0	71	1.08
48725229--48725415	51	3.7	51	80	5	218	30	26	17	26	1.97
48725227--48725411	101	1.8	101	87	5	275	30	25	17	25	1.97
48730886--48730925	19	2.1	19	95	0	71	7	45	22	25	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48739673--48739731	29	2.0	29	86	0	82	27	10	27	35	1.89
48740130--48740154	3	8.3	3	100	0	50	32	0	32	36	1.58
48742134--48742175	20	2.1	20	86	0	57	47	0	7	45	1.30
48743590--48743673	41	2.0	41	95	0	150	34	13	13	39	1.83
48744457--48744486	12	2.5	12	94	0	51	30	13	20	36	1.90
48746764--48746805	20	2.1	20	86	0	57	47	0	7	45	1.30
48750705--48750731	3	9.0	3	100	0	54	33	0	0	66	0.92
48751166--48751237	34	2.2	33	87	7	110	72	1	4	22	1.10
48751174--48751234	18	3.6	17	75	20	65	73	1	3	21	1.06
48759524--48759589	30	2.2	31	86	2	89	24	24	19	31	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211