genome.fa.s14.2.7.7.80.10.50.1000.166.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  166  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48961814--48961857	18	2.4	18	88	7	63	40	43	2	13	1.57
48961898--48961926	6	4.8	6	100	0	58	65	17	0	17	1.27
48962009--48962084	9	8.4	9	77	11	84	30	9	18	42	1.81
48962009--48962084	18	4.2	18	83	6	100	30	9	18	42	1.81
48962009--48962084	27	2.8	27	84	4	100	30	9	18	42	1.81
48962147--48962205	28	2.1	28	81	3	66	35	6	18	38	1.78
48970287--48970313	6	4.5	6	100	0	54	18	0	81	0	0.69
48973374--48973422	15	3.3	15	76	0	53	48	2	16	32	1.57
48980901--48981064	43	3.9	43	80	7	174	28	15	26	29	1.96
48987833--48987996	43	3.9	43	80	7	174	28	15	26	29	1.96
48988808--48988848	21	2.0	21	95	0	73	53	14	7	24	1.66
48993421--48993445	13	1.9	13	100	0	50	8	0	24	68	1.16
48994556--48994657	41	2.5	41	90	3	152	27	19	25	27	1.99
48995818--48995964	28	5.2	28	81	8	165	40	10	19	29	1.86
48995818--48996044	56	4.1	56	80	5	178	36	12	22	29	1.91
48995832--48996103	27	10.0	27	80	7	153	33	14	22	29	1.94
48995949--48996103	27	5.8	27	82	7	174	27	17	25	29	1.97
48995947--48996090	54	2.7	54	86	3	193	28	16	26	28	1.97
48998207--48998619	31	13.3	31	81	2	452	47	8	15	27	1.75
49000153--49000241	27	3.3	26	76	6	79	35	16	29	17	1.93
49000127--49000381	121	2.1	120	86	2	341	32	17	27	22	1.96
49000127--49000430	121	2.5	121	83	3	337	32	17	27	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49026117--49026195	37	2.1	37	90	0	122	25	31	18	24	1.98
49026314--49026824	47	10.7	47	95	1	844	29	29	8	32	1.87
49026314--49026824	241	2.2	238	91	4	741	29	29	8	32	1.87
49037015--49037069	16	3.4	16	80	7	67	41	5	20	32	1.75
49037632--49037759	62	2.1	62	93	0	220	25	13	11	49	1.76
49043210--49043262	23	2.4	22	76	20	56	9	18	1	69	1.25
49048576--49048644	21	3.2	21	69	15	68	49	5	10	34	1.61
49048598--49048674	23	3.4	23	67	13	70	51	6	9	32	1.59
49048577--49048675	44	2.2	44	98	0	189	50	6	10	33	1.61
49048749--49048777	10	2.7	11	89	10	51	55	0	0	44	0.99
49049933--49050076	70	2.1	69	98	1	279	35	6	8	50	1.58
49059297--49059356	17	3.5	17	73	8	59	15	16	35	33	1.90
49060664--49060688	12	2.1	12	100	0	50	44	0	8	48	1.32
49061381--49061489	41	2.6	41	86	1	146	24	21	27	26	1.99
49066188--49066736	47	11.6	47	94	1	918	32	8	29	29	1.86
49070917--49071044	24	5.2	25	69	10	66	32	21	28	18	1.97
49073655--49073806	45	3.4	44	78	5	146	37	22	13	26	1.92
49073644--49073851	90	2.3	89	75	8	199	35	22	15	26	1.94
49073771--49073864	45	2.1	45	81	0	107	32	22	12	31	1.92
49077518--49077858	179	1.9	179	93	0	583	36	21	13	27	1.91
49078482--49078515	17	2.0	17	88	11	52	17	26	8	47	1.77
49080799--49080833	16	2.2	16	100	0	70	40	11	25	22	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49089520--49089639	52	2.3	52	92	1	197	31	30	10	26	1.90
49098028--49098112	39	2.2	39	89	0	125	44	21	3	30	1.69
49098799--49098847	26	2.0	26	88	8	75	57	8	8	26	1.56
49113337--49113485	66	2.3	66	95	1	264	39	21	7	31	1.81
49114757--49114785	10	2.9	10	100	0	58	41	20	6	31	1.79
49117221--49117343	61	2.0	61	93	3	212	37	14	14	33	1.87
49120584--49120717	62	2.2	59	85	5	180	43	3	2	50	1.35
49124273--49124375	45	2.3	45	83	6	129	46	5	17	30	1.71
49124273--49124407	42	3.1	43	81	8	114	44	8	16	31	1.77
49124697--49124727	15	2.1	15	100	0	62	41	19	32	6	1.77
49129177--49129221	23	2.0	23	91	4	74	35	8	2	53	1.45
49140280--49140327	22	2.2	22	96	0	87	31	27	22	18	1.97
49140430--49140473	22	2.0	22	86	0	61	20	31	15	31	1.94
49141966--49141993	14	2.0	14	100	0	56	50	0	0	50	1.00
49141988--49142053	29	2.2	30	84	10	91	56	3	3	37	1.30
49142114--49142163	21	2.5	20	83	6	64	66	0	4	30	1.10
49142463--49142515	23	2.3	22	81	9	61	41	0	0	58	0.98
49143306--49143367	32	1.9	33	83	9	83	66	4	3	25	1.27
49146427--49146491	27	2.3	29	81	5	80	40	1	3	55	1.25
49146518--49146573	28	2.0	27	82	6	67	33	0	5	60	1.19
49155302--49155377	25	3.0	26	79	7	77	31	21	23	23	1.98
49155334--49155404	25	2.9	25	75	10	74	33	22	25	18	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49155385--49155536	25	6.2	24	79	12	116	34	21	28	15	1.94
49155385--49155536	50	3.1	49	78	9	150	34	21	28	15	1.94
49155396--49155536	75	1.9	74	80	4	167	34	19	29	16	1.94
49160290--49160321	7	4.7	7	92	7	57	25	0	0	75	0.81
49160290--49160321	13	2.4	14	94	5	57	25	0	0	75	0.81
49161235--49161288	24	2.3	23	81	9	65	44	3	0	51	1.19
49161235--49161293	25	2.3	24	80	8	64	45	3	0	50	1.18
49161395--49161465	18	3.7	19	73	19	67	50	1	1	46	1.18
49161436--49161480	20	2.1	22	84	8	58	55	0	0	44	0.99
49161864--49161916	20	2.4	23	84	12	76	47	0	0	52	1.00
49170251--49170301	18	3.1	17	76	21	54	68	0	19	11	1.20
49170782--49170840	3	20.0	3	96	3	111	66	0	33	0	0.92
49172429--49172463	16	2.1	17	89	5	54	11	51	0	37	1.38
49178930--49178967	15	2.4	17	86	8	53	71	2	7	18	1.23
49179287--49179349	27	2.4	26	80	12	67	61	3	3	31	1.27
49179413--49179455	21	2.0	21	82	8	52	48	4	11	34	1.60
49180770--49181016	44	5.8	44	84	7	330	26	24	22	26	2.00
49180867--49180947	37	2.2	37	82	8	105	25	23	24	25	2.00
49180830--49180991	81	2.0	81	91	0	261	27	23	23	25	2.00
49181016--49181294	88	3.2	87	80	5	312	22	23	26	27	1.99
49181230--49181337	43	2.5	44	76	3	119	23	29	23	24	1.99
49182560--49182608	21	2.3	21	82	0	62	16	14	0	69	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49188309--49188346	15	2.4	17	86	8	53	71	2	7	18	1.23
49194245--49194281	7	5.3	7	93	0	56	18	56	0	24	1.41
49200900--49200952	27	2.0	27	88	0	79	15	24	24	35	1.94
49208093--49208133	16	2.5	17	76	11	50	17	7	2	73	1.17
49208257--49208310	26	2.1	26	96	0	99	66	9	7	16	1.42
49209365--49209427	31	2.1	29	85	5	81	11	19	15	53	1.71
49209571--49209636	10	6.7	10	76	8	64	53	1	1	43	1.19
49209570--49209636	20	3.4	19	82	8	89	52	1	1	44	1.19
49209589--49209646	30	1.9	30	82	6	73	56	1	1	39	1.19
49210257--49210328	28	2.5	29	77	2	74	48	34	0	16	1.47
49210342--49210391	22	2.2	23	85	3	66	44	36	2	18	1.61
49210342--49210395	23	2.4	22	87	3	72	46	33	1	18	1.60
49210719--49210788	21	3.5	21	65	21	60	51	4	0	44	1.21
49210714--49210797	38	2.2	39	91	2	134	48	3	0	47	1.19
49218338--49218415	39	2.0	39	94	0	138	23	10	19	47	1.79
49223819--49223862	19	2.2	19	84	12	52	45	0	2	52	1.13
49223819--49223857	16	2.5	15	83	8	51	43	0	2	53	1.14
49225993--49226053	31	2.0	31	100	0	122	19	4	16	59	1.55
49226893--49227180	145	2.0	144	88	2	427	39	9	23	27	1.86
49231162--49231228	27	2.5	27	85	0	89	35	25	16	22	1.94
49231372--49231437	27	2.5	26	82	9	71	21	21	21	36	1.95
49231475--49231703	32	7.3	32	71	9	98	20	19	20	39	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49231551--49231665	59	1.9	59	89	0	176	20	21	20	37	1.95
49231754--49231807	26	2.1	26	82	0	63	22	25	18	33	1.97
49231761--49231812	26	2.0	26	84	0	68	25	23	17	34	1.96
49236995--49237444	226	2.0	226	92	0	740	32	12	21	33	1.91
49239179--49239237	17	3.4	17	72	4	55	40	16	3	38	1.66
49241501--49241544	19	2.2	20	96	4	81	34	0	2	63	1.07
49241508--49241550	19	2.4	17	85	14	52	41	0	2	55	1.12
49241509--49241555	20	2.4	19	85	7	58	44	0	2	53	1.12
49241602--49241646	21	2.1	21	84	8	56	31	2	2	64	1.18
49241640--49242005	184	2.0	187	84	5	481	37	4	12	44	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211