genome.fa.s14.2.7.7.80.10.50.1000.160.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  160  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47306497--47306546	25	2.0	25	84	0	64	36	20	18	26	1.95
47305622--47306634	125	8.1	125	96	0	1819	35	19	18	25	1.95
47324122--47324187	34	1.9	34	90	3	105	42	15	10	31	1.81
47324157--47324196	14	2.9	14	84	0	53	42	17	7	32	1.77
47325233--47325278	22	2.0	23	95	4	85	65	4	0	30	1.12
47330663--47330740	23	3.3	23	70	16	79	58	5	15	20	1.55
47330655--47330753	47	2.1	47	100	0	198	56	7	15	21	1.62
47332925--47332956	16	1.9	17	93	6	57	37	21	0	40	1.54
47333117--47333286	43	4.0	43	78	11	165	31	28	17	22	1.97
47333117--47333274	84	1.9	84	84	7	214	30	28	18	22	1.97
47340304--47340335	16	1.9	17	93	6	57	37	21	0	40	1.54
47340494--47340663	43	4.0	43	78	13	190	31	27	17	22	1.97
47340496--47340653	84	1.9	84	87	7	232	30	27	18	22	1.98
47341161--47341194	9	3.8	9	84	0	50	26	14	0	58	1.36
47341157--47341197	18	2.3	18	100	0	82	29	19	0	51	1.47
47346166--47346190	6	4.2	6	100	0	50	36	48	0	16	1.46
47351270--47351394	42	3.0	42	78	2	126	43	18	21	16	1.88
47351348--47351435	21	4.2	21	76	2	88	45	19	17	18	1.86
47356814--47357037	104	2.2	104	93	1	378	31	31	19	17	1.95
47359399--47359504	41	2.6	41	95	0	185	21	21	25	31	1.98
47360690--47360735	24	1.9	24	82	8	58	32	6	2	58	1.36
47364860--47364897	18	2.1	18	85	9	51	71	0	15	13	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47364869--47364921	23	2.3	23	80	6	63	66	0	20	13	1.25
47364878--47364919	22	1.9	22	90	9	68	71	0	19	9	1.13
47366388--47366568	44	4.1	43	63	12	98	27	20	23	28	1.99
47366180--47367437	265	4.8	262	87	3	1754	28	18	24	28	1.98
47367182--47367406	44	5.1	44	69	8	143	28	20	24	27	1.99
47366180--47367437	132	9.5	132	88	3	1739	28	18	24	28	1.98
47366180--47367515	397	3.4	397	83	6	1594	28	18	23	28	1.98
47368862--47368888	13	2.1	13	100	0	54	29	0	0	70	0.88
47368940--47369017	27	3.0	26	79	7	86	37	7	6	48	1.57
47369063--47369097	14	2.5	14	85	0	52	28	0	0	71	0.86
47369072--47369097	12	2.2	12	100	0	52	26	0	0	73	0.84
47369107--47369152	24	1.9	24	82	8	58	32	6	2	58	1.36
47373176--47373212	16	2.3	16	95	0	65	21	37	5	35	1.77
47376194--47376239	18	2.8	17	78	15	53	30	41	28	0	1.56
47377943--47377969	7	3.9	7	100	0	54	59	11	0	29	1.32
47377993--47378063	30	2.3	30	95	2	124	50	7	8	33	1.60
47378590--47378621	13	2.3	15	89	10	50	53	0	0	46	1.00
47379152--47379356	92	2.2	92	88	2	306	44	5	12	37	1.65
47383395--47383492	20	4.9	20	68	5	81	17	31	19	31	1.95
47383387--47383505	40	3.0	41	86	7	172	19	27	19	33	1.96
47383387--47383536	40	3.8	38	85	6	167	19	26	18	35	1.95
47386175--47386313	57	2.4	57	85	0	188	32	17	23	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47386367--47386437	28	2.6	27	76	14	72	28	18	23	29	1.98
47387181--47387247	27	2.5	27	80	0	80	32	13	31	22	1.92
47389597--47389699	21	5.1	20	71	15	77	59	0	2	37	1.13
47389613--47389649	11	3.4	11	96	0	65	54	0	5	40	1.24
47389597--47389707	40	2.7	41	87	6	163	60	0	2	36	1.11
47389674--47389719	17	2.7	17	82	0	56	63	0	0	36	0.95
47396551--47396849	41	7.3	41	92	0	490	22	28	20	28	1.98
47404309--47404471	41	4.0	41	90	0	256	21	28	22	28	1.99
47404315--47404471	82	1.9	81	98	1	305	21	28	21	28	1.99
47404448--47404493	26	1.9	24	83	16	60	21	28	17	32	1.96
47404404--47404532	60	2.0	64	85	11	176	20	29	20	28	1.98
47404382--47404573	101	1.9	102	94	4	343	22	28	19	29	1.98
47404322--47404585	142	1.8	145	88	5	408	22	28	19	29	1.98
47404471--47404585	41	3.0	38	86	10	148	23	29	17	29	1.97
47404798--47404835	19	2.0	19	89	0	58	47	15	0	36	1.46
47409317--47409350	14	2.4	14	85	0	50	17	41	26	14	1.88
47409657--47409883	96	2.4	96	87	2	321	39	2	17	40	1.64
47409920--47410336	126	3.3	126	91	0	692	31	18	22	27	1.97
47412726--47412768	21	2.0	21	86	0	59	6	23	39	30	1.81
47413031--47413068	18	2.1	18	90	0	58	42	10	26	21	1.85
47414900--47414938	10	3.6	10	83	16	51	51	0	25	23	1.49
47420029--47420321	35	8.3	35	76	3	246	28	6	30	34	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47426140--47426181	21	2.0	21	90	0	66	30	35	9	23	1.87
47427457--47427516	27	2.2	27	87	0	84	13	18	36	31	1.89
47429317--47429353	18	2.1	18	89	0	56	24	18	18	37	1.94
47429767--47429854	24	3.7	24	71	14	74	42	21	12	23	1.87
47434265--47434343	26	3.0	26	78	10	72	40	1	3	54	1.26
47434308--47434349	9	5.0	8	94	5	66	40	0	0	59	0.97
47434309--47434349	17	2.4	18	92	8	68	41	0	0	58	0.98
47434420--47434453	4	8.5	4	87	12	52	76	0	23	0	0.79
47435556--47435689	39	3.4	38	73	12	112	22	21	27	28	1.99
47436348--47436398	17	3.0	17	91	0	75	41	13	11	33	1.81
47440785--47440871	29	3.0	29	81	1	104	25	21	24	28	1.99
47440801--47440884	28	3.0	28	82	1	96	26	23	23	26	2.00
47446588--47446617	7	4.4	7	95	4	53	46	13	0	40	1.43
47446841--47446892	24	2.2	22	72	21	52	32	19	0	48	1.49
47449130--47449203	34	2.2	34	100	0	148	33	20	14	31	1.93
47449484--47449597	51	2.2	50	80	7	115	57	6	6	30	1.48
47449654--47449691	12	2.8	14	88	11	53	65	2	0	31	1.06
47449911--47449949	19	2.0	21	85	10	55	69	5	10	15	1.34
47450136--47450232	21	4.7	21	87	5	144	36	12	12	39	1.81
47450149--47450252	19	5.3	19	82	6	118	37	13	11	37	1.81
47450149--47450251	40	2.6	40	90	0	161	37	12	11	37	1.80
47450480--47450568	44	2.0	44	87	8	128	25	21	20	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47450496--47450960	217	2.1	217	89	2	693	28	23	19	28	1.98
47450986--47451075	44	2.0	44	82	0	108	27	26	14	31	1.95
47450957--47451465	132	3.9	132	92	0	840	26	23	18	31	1.97
47451257--47452016	44	17.2	44	63	11	120	26	23	18	31	1.97
47451419--47451508	47	1.9	47	97	0	171	31	25	14	28	1.95
47451155--47451776	311	2.0	311	93	0	1075	26	23	18	30	1.98
47451287--47451640	179	2.0	179	92	1	593	27	23	18	29	1.98
47451466--47452832	132	10.4	132	90	0	2043	26	24	18	31	1.97
47450979--47451905	443	2.1	443	89	1	1436	26	24	18	30	1.98
47452786--47452880	47	2.1	45	92	4	154	32	27	13	26	1.94
47452654--47453000	174	2.0	179	88	4	526	28	24	17	29	1.97
47452833--47453659	132	6.4	132	85	4	1076	26	23	18	31	1.97
47453613--47453709	47	2.1	47	94	0	167	31	25	13	28	1.94
47453488--47453834	179	2.0	172	88	4	514	27	23	17	31	1.97
47453660--47454353	130	5.4	132	88	4	1004	26	23	19	30	1.98
47454178--47454530	176	2.0	179	91	2	581	28	23	18	30	1.98
47454308--47454394	46	1.9	46	90	6	142	31	24	14	29	1.95
47454322--47455054	132	5.6	132	82	6	807	27	23	18	30	1.97
47454174--47454544	174	2.1	174	88	5	561	27	23	19	29	1.98
47455008--47455102	45	2.1	47	90	4	149	31	26	12	29	1.93
47454876--47455224	174	2.0	178	88	5	530	27	23	17	30	1.97
47455055--47455614	132	4.3	132	86	5	779	27	23	18	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47455572--47455661	47	1.9	47	95	0	162	31	24	14	30	1.95
47455440--47455797	179	2.0	179	92	0	599	28	24	17	29	1.97
47455723--47455905	44	4.2	44	62	8	102	25	22	20	32	1.98
47455619--47460419	132	36.4	132	79	7	2275	26	23	18	31	1.98
47456277--47456424	47	3.0	48	84	5	181	30	26	17	25	1.97
47456289--47456440	52	3.0	52	83	4	179	30	25	20	23	1.98
47456909--47456999	44	2.0	47	87	10	136	31	25	14	28	1.94
47456774--47457826	176	6.0	178	70	14	540	26	24	18	30	1.98
47457184--47457495	44	7.1	44	63	16	128	25	23	19	31	1.98
47457605--47457694	47	1.9	47	95	0	162	31	25	15	27	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211