genome.fa.s14.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  42  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11191198--11191376	36	5.1	34	75	10	121	32	12	10	44	1.76
11191363--11191417	21	2.6	22	83	13	71	40	14	12	32	1.84
11191398--11191428	16	1.9	16	93	0	53	25	12	12	48	1.77
11191398--11191518	53	2.3	54	79	13	135	30	9	14	45	1.77
11194892--11194937	12	3.5	13	78	21	51	58	4	0	36	1.18
11205774--11205845	29	2.3	32	81	6	87	59	5	1	33	1.29
11206289--11206349	32	1.9	32	83	6	79	45	13	11	29	1.78
11208392--11208704	42	7.4	42	83	5	335	29	21	23	26	1.99
11208410--11208703	85	3.5	84	82	5	344	29	20	23	26	1.99
11209153--11209221	21	3.3	21	85	0	93	2	42	20	34	1.67
11211122--11211518	9	44.0	9	72	17	272	35	1	19	44	1.57
11211320--11211386	28	2.4	28	92	0	107	32	2	16	47	1.62
11211391--11211429	16	2.3	18	91	8	64	33	0	23	43	1.54
11211537--11211580	23	1.9	23	95	0	79	38	0	18	43	1.50
11211582--11211691	36	3.3	36	67	27	105	42	7	8	41	1.62
11211663--11211726	13	5.2	13	71	19	57	48	1	7	42	1.41
11214129--11214464	146	2.3	147	83	4	392	36	21	14	26	1.93
11214255--11214593	147	2.3	146	81	6	366	37	20	13	27	1.91
11215943--11216199	114	2.3	114	76	7	263	27	25	21	25	2.00
11216124--11216200	41	1.9	40	86	2	109	29	24	16	28	1.97
11217716--11217892	64	2.6	67	81	9	209	41	17	7	33	1.79
11224480--11224509	11	2.7	11	89	0	51	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11224631--11224690	30	2.0	30	90	0	93	56	13	0	30	1.37
11224723--11224765	22	2.0	22	85	0	59	55	9	13	20	1.66
11241697--11241722	12	2.2	12	100	0	52	26	23	7	42	1.81
11244343--11244405	25	2.5	25	86	0	81	30	23	26	19	1.98
11248263--11248309	23	2.0	23	91	0	76	44	10	6	38	1.65
11248554--11248609	29	1.9	29	92	0	94	35	0	8	55	1.31
11249727--11249785	29	2.0	30	90	3	93	33	3	10	52	1.52
11257922--11257946	2	12.5	2	100	0	50	52	0	48	0	1.00
11262972--11263023	26	2.0	25	85	3	68	32	3	23	40	1.72
11271546--11271597	21	2.4	21	78	9	52	32	1	7	57	1.38
11272021--11272053	15	2.2	15	94	0	57	24	0	12	63	1.28
11272323--11272582	98	2.7	98	98	0	502	29	10	25	35	1.88
11274018--11274112	30	3.3	29	82	5	104	62	5	1	31	1.24
11274040--11274112	10	7.7	9	75	15	67	63	4	1	31	1.22
11274039--11274125	29	3.0	29	76	8	88	62	5	1	31	1.26
11286536--11286578	23	2.0	21	86	9	59	34	2	4	58	1.32
11286545--11286584	7	5.6	7	84	3	53	32	2	2	62	1.22
11287094--11287127	16	2.1	16	88	0	50	44	0	0	55	0.99
11290947--11290974	2	14.0	2	100	0	56	50	0	50	0	1.00
11291114--11291158	2	23.0	2	95	4	83	0	51	0	48	1.00
11303370--11303483	34	3.4	34	80	6	142	29	13	14	42	1.83
11303590--11303640	24	2.3	23	83	10	61	33	23	13	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11305109--11305243	40	3.4	40	75	9	134	31	25	18	25	1.98
11305128--11305242	37	2.9	39	76	8	117	33	23	17	26	1.96
11305744--11305768	13	1.9	13	100	0	50	60	0	0	40	0.97
11305744--11305798	15	3.9	14	76	17	51	54	3	0	41	1.18
11312378--11312422	20	2.2	20	80	0	54	4	24	4	66	1.29
11312480--11312504	13	1.9	13	100	0	50	60	0	0	40	0.97
11315173--11315213	21	2.0	21	85	0	55	36	0	2	60	1.10
11322744--11322776	7	4.7	7	92	0	57	72	12	0	15	1.12
11323566--11323591	2	13.0	2	100	0	52	50	0	0	50	1.00
11329087--11329133	3	15.7	3	95	0	76	4	34	0	61	1.15
11333125--11333183	4	14.8	4	100	0	118	25	0	23	50	1.49
11347337--11347410	37	2.0	37	100	0	148	37	27	5	29	1.79
11347789--11347823	5	7.0	5	96	0	52	60	34	0	5	1.21
11356988--11357162	85	2.1	85	96	0	323	32	22	14	30	1.94
11363548--11363573	13	2.0	13	100	0	52	46	0	0	53	1.00
11365146--11365265	41	2.9	41	93	0	204	29	24	20	26	1.99
11369200--11369233	2	17.0	2	100	0	68	50	0	0	50	1.00
11378991--11379024	17	2.0	17	88	0	50	14	8	5	70	1.31
11379475--11379551	30	2.6	30	84	9	97	50	9	10	29	1.67
11381451--11381497	20	2.2	21	85	7	60	68	0	2	29	1.02
11398094--11398173	40	2.0	40	100	0	160	30	17	20	32	1.95
11409634--11409678	22	2.0	22	91	0	72	33	2	15	48	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11414226--11414270	22	2.0	22	91	0	72	33	2	15	48	1.57
11421874--11421903	14	2.1	14	93	0	51	10	30	10	50	1.69
11422420--11422470	24	2.1	24	82	7	59	68	5	5	19	1.31
11434805--11434835	16	1.9	16	100	0	62	0	25	16	58	1.38
11440967--11441015	23	2.1	23	85	7	64	36	8	6	48	1.58
11445197--11445405	87	2.3	86	84	8	242	38	12	8	39	1.75
11445609--11445706	9	10.3	9	68	14	63	62	2	2	33	1.18
11445664--11445727	21	3.1	21	75	4	58	67	1	3	28	1.15
11445645--11445774	69	1.9	68	80	10	149	63	0	6	29	1.23
11445693--11445783	28	3.1	29	75	12	96	64	0	6	28	1.18
11446032--11446088	29	1.9	30	89	3	89	35	3	1	59	1.25
11449418--11449566	67	2.2	67	84	3	194	42	12	4	40	1.64
11450867--11450931	30	2.2	30	97	0	121	60	13	1	24	1.43
11450960--11451007	22	2.2	22	84	0	60	60	4	12	22	1.49
11451068--11451156	43	2.1	43	95	0	160	22	13	13	50	1.76
11454220--11454255	19	1.9	18	94	5	63	72	0	27	0	0.85
11454619--11455692	153	7.0	151	81	8	1280	52	7	9	30	1.61
11454620--11455686	155	7.0	152	81	7	1245	52	7	9	30	1.61
11455427--11455459	13	2.5	13	86	13	50	78	3	0	18	0.87
11454617--11455688	304	3.5	300	90	4	1646	52	7	9	30	1.61
11457755--11458129	124	3.0	124	96	0	689	40	14	11	33	1.82
11461002--11461088	37	2.3	38	84	11	108	51	10	4	33	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11461099--11461197	42	2.4	41	75	17	98	45	14	5	35	1.66
11469484--11469588	41	2.6	41	83	6	131	30	28	17	23	1.97
11471263--11471287	13	1.9	13	100	0	50	40	24	4	32	1.73
11473523--11473631	56	2.0	55	88	1	164	43	12	22	21	1.86
11474460--11474507	20	2.3	21	82	13	55	4	6	10	79	1.05
11474687--11474724	18	2.1	19	90	9	62	10	5	39	44	1.61
11474693--11474730	17	2.2	17	86	9	51	13	5	39	42	1.66
11475646--11475702	29	2.0	28	86	6	80	38	1	0	59	1.08
11484702--11484760	18	3.3	18	72	13	50	18	28	1	50	1.56
11488565--11488629	27	2.4	27	82	9	80	35	21	24	18	1.96
11488798--11489125	26	12.6	26	82	7	310	24	14	20	39	1.90
11488824--11489125	52	5.8	52	84	3	385	24	14	21	40	1.90
11488824--11489125	78	3.9	78	84	4	378	24	14	21	40	1.90
11490986--11491065	25	3.2	26	80	5	101	35	18	25	21	1.96
11490989--11491085	50	1.9	50	87	8	144	36	20	24	18	1.95
11491010--11491083	25	2.9	25	76	6	78	39	20	21	18	1.93
11495700--11495733	11	2.9	12	82	8	52	26	23	0	50	1.50
11498641--11498683	19	2.2	20	83	8	52	30	23	2	44	1.66
11511520--11511598	36	2.2	36	88	4	115	17	12	27	41	1.86
11513845--11513883	19	2.2	19	86	9	55	38	15	5	41	1.69
11513892--11513997	25	4.3	25	74	8	92	31	20	25	22	1.98
11514202--11514245	22	2.0	22	81	0	52	9	13	27	50	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11514309--11514468	86	1.9	86	86	0	230	22	27	20	29	1.99
11514332--11514491	43	3.7	43	85	0	205	21	29	19	29	1.98
11514313--11514491	86	2.1	86	83	3	218	21	29	20	29	1.98
11515206--11515249	21	2.1	21	87	8	63	34	2	15	47	1.58
11515222--11515246	12	2.1	12	100	0	50	32	0	16	52	1.44
11515358--11515398	19	2.2	19	86	8	57	56	0	4	39	1.21
11515371--11515423	19	2.8	19	82	0	52	58	0	1	39	1.09
11515908--11515937	14	2.1	14	93	0	51	53	10	13	23	1.69
11516915--11516965	16	3.2	16	80	0	66	27	15	45	11	1.81
11517263--11517372	40	2.7	42	76	9	122	34	24	22	18	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211