genome.fa.s14.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  139  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41329388--41329454	16	3.8	16	74	24	53	58	7	1	32	1.35
41329419--41329454	16	2.2	16	100	0	72	55	5	0	38	1.23
41329924--41329995	29	2.5	29	100	0	144	37	13	0	48	1.43
41329978--41330033	28	2.0	28	100	0	112	57	7	0	35	1.26
41330059--41330132	27	2.7	27	82	10	89	27	24	31	17	1.97
41330447--41330557	57	2.0	55	89	3	168	39	9	3	46	1.54
41330564--41330634	37	1.9	37	97	0	133	49	1	11	38	1.48
41330570--41330638	19	3.7	19	78	5	88	52	1	10	36	1.44
41330570--41330647	19	4.1	19	78	5	59	51	1	11	35	1.46
41330713--41330798	27	3.2	26	81	4	93	20	26	22	30	1.98
41330840--41330937	28	3.5	28	97	2	180	47	0	13	38	1.42
41339155--41339223	28	2.5	26	78	17	77	42	0	0	57	0.98
41339173--41339229	24	2.3	25	84	6	71	40	0	0	59	0.97
41339151--41339229	26	2.9	27	80	14	90	41	0	0	58	0.98
41339953--41340001	24	2.0	24	88	4	71	57	4	0	38	1.18
41340036--41340102	35	1.9	35	87	6	100	44	0	4	50	1.22
41343096--41343369	132	2.1	132	80	0	314	21	17	24	35	1.95
41345674--41345754	27	3.0	27	78	3	92	25	25	23	24	2.00
41346216--41346655	72	6.1	70	71	7	278	27	16	21	34	1.95
41346139--41346470	144	2.3	142	80	5	362	28	18	20	32	1.96
41346216--41346553	144	2.4	144	80	3	351	27	17	21	33	1.96
41346212--41346659	216	2.1	215	81	4	517	27	16	21	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41346623--41346704	40	2.0	40	100	0	164	30	12	18	39	1.87
41346688--41347019	72	4.7	72	76	6	309	26	15	22	35	1.94
41346761--41347020	144	1.8	143	87	2	387	26	15	23	35	1.94
41347330--41347357	13	2.2	13	100	0	56	14	7	14	64	1.48
41355015--41355061	22	2.1	22	100	0	94	27	0	12	59	1.34
41355891--41355928	10	4.1	9	83	16	51	52	0	5	42	1.24
41355893--41355928	14	2.6	14	83	16	56	50	0	5	44	1.25
41359544--41359667	43	2.7	47	90	9	220	46	8	16	28	1.76
41359793--41359824	12	2.6	13	85	14	50	37	0	6	56	1.25
41362484--41362530	20	2.3	20	100	0	94	42	4	4	48	1.42
41364669--41364707	20	2.0	20	94	0	69	23	30	25	20	1.98
41366395--41366427	5	6.4	5	96	3	57	78	0	0	21	0.75
41367918--41368058	42	3.4	42	89	1	212	24	26	10	39	1.88
41375113--41375253	42	3.4	41	86	7	187	24	24	12	39	1.89
41387561--41387586	12	2.2	12	100	0	52	92	0	7	0	0.39
41395536--41395583	20	2.6	19	78	12	55	47	2	4	45	1.33
41395606--41395646	16	2.6	16	85	11	50	46	0	2	51	1.14
41398491--41398522	16	2.0	16	100	0	64	50	25	12	12	1.75
41400558--41400617	18	3.2	18	75	11	66	6	16	3	73	1.18
41401551--41401580	13	2.3	13	100	0	60	13	0	6	80	0.91
41403091--41403122	16	2.0	16	93	0	55	53	25	9	12	1.68
41411777--41411900	34	3.6	34	78	4	124	44	16	7	32	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41412547--41412609	25	2.7	23	83	9	90	25	22	17	34	1.95
41416178--41416224	23	2.1	23	88	4	69	63	12	2	21	1.39
41416192--41416250	29	2.1	28	83	3	73	62	10	0	27	1.27
41422555--41422634	39	2.1	39	83	9	101	53	5	2	38	1.36
41427222--41427261	21	1.9	21	89	0	62	50	2	0	47	1.14
41427275--41427323	21	2.4	20	82	3	62	40	0	0	59	0.98
41427235--41427338	50	2.1	50	83	5	129	37	1	0	59	1.15
41428336--41428532	98	2.0	98	93	0	340	37	24	10	28	1.88
41429994--41430148	19	7.8	19	81	5	139	38	13	8	39	1.75
41430017--41430148	38	3.4	40	91	4	200	37	13	9	40	1.77
41430028--41430147	59	2.0	59	90	0	186	38	12	9	40	1.75
41430324--41430836	44	11.8	43	72	15	289	27	23	21	27	1.99
41430324--41430836	89	5.9	88	72	13	305	27	23	21	27	1.99
41430314--41430915	217	2.8	217	93	0	999	28	23	20	27	1.99
41430907--41431559	132	4.9	131	93	0	1081	24	25	20	30	1.99
41431014--41431460	44	10.2	44	63	7	163	25	24	19	31	1.98
41433274--41433626	180	2.0	180	94	0	625	32	26	12	27	1.93
41437534--41437730	98	2.0	98	92	0	331	37	23	10	29	1.88
41438392--41438448	27	2.3	26	85	11	75	61	3	5	29	1.35
41438533--41438557	10	2.5	10	100	0	50	52	8	0	40	1.31
41439211--41439302	19	4.8	19	90	0	148	36	14	10	38	1.81
41439188--41439302	38	2.9	38	87	5	149	39	13	9	37	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41439820--41439968	80	1.9	81	82	4	194	49	9	4	36	1.54
41458736--41458780	20	2.2	20	84	4	54	46	11	15	26	1.79
41460167--41460209	11	4.0	10	85	14	59	20	30	0	48	1.50
41460232--41460287	11	4.9	11	73	16	51	35	0	1	62	1.06
41460228--41460279	21	2.5	19	74	17	50	34	0	1	63	1.06
41460231--41460281	23	2.3	21	80	6	57	35	0	1	62	1.06
41460255--41460283	14	2.1	14	93	6	51	24	0	0	75	0.80
41463457--41463736	95	2.9	95	83	4	357	42	18	2	37	1.64
41463457--41463732	96	2.9	96	83	3	342	42	18	2	36	1.64
41465950--41465988	20	2.0	19	85	5	51	56	2	15	25	1.52
41466993--41467048	23	2.4	24	81	3	69	35	8	1	53	1.43
41467578--41467681	52	2.0	52	100	0	208	25	13	5	55	1.60
41467594--41467677	28	3.1	28	63	13	77	25	10	5	58	1.54
41472931--41473011	3	27.0	3	87	0	90	29	3	4	61	1.34
41473195--41473230	17	2.1	17	90	10	56	27	5	2	63	1.30
41496364--41496807	50	9.0	50	72	4	301	32	24	19	22	1.97
41496364--41496796	98	4.4	98	91	0	650	33	24	19	22	1.97
41497618--41497657	10	3.9	10	83	3	53	5	12	0	82	0.82
41498347--41498391	17	2.8	17	83	12	51	24	4	4	66	1.29
41504116--41504229	27	4.2	26	74	6	93	40	15	16	27	1.89
41504216--41504240	11	2.3	11	100	0	50	56	16	12	16	1.68
41508105--41508145	18	2.2	19	86	4	57	53	2	0	43	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41508120--41508164	15	2.9	16	87	6	67	46	4	0	48	1.22
41521468--41521514	25	1.9	24	83	12	60	42	2	2	53	1.25
41522991--41523061	22	3.1	22	80	15	83	25	29	1	43	1.63
41522991--41523061	11	6.3	11	78	16	67	25	29	1	43	1.63
41523021--41523119	51	2.0	50	84	6	128	25	26	3	45	1.68
41523115--41523154	10	4.0	10	83	0	53	37	0	0	62	0.95
41523116--41523154	20	2.0	20	89	0	60	38	0	0	61	0.96
41524908--41524947	18	2.2	18	86	0	53	17	30	7	45	1.76
41525482--41525836	43	8.0	42	79	11	273	43	31	1	23	1.63
41525482--41525836	21	16.0	21	75	10	298	43	31	1	23	1.63
41525536--41525836	64	4.6	63	79	7	282	42	30	1	24	1.64
41526434--41527022	126	4.7	126	92	1	966	29	23	17	29	1.97
41528430--41528484	27	2.0	27	89	0	83	34	0	7	58	1.26
41528650--41528681	12	2.7	12	90	0	55	28	0	0	71	0.86
41528904--41528951	22	2.2	22	81	7	53	60	4	16	18	1.51
41529429--41529558	40	3.2	40	79	8	104	25	26	26	20	1.99
41529489--41529587	40	2.5	40	91	3	164	25	24	28	22	1.99
41542113--41542153	12	3.4	12	96	0	64	7	39	31	21	1.81
41549272--41549296	2	12.5	2	100	0	50	52	0	0	48	1.00
41549780--41549830	27	2.0	26	84	7	68	29	17	5	47	1.71
41551777--41551819	7	6.1	7	100	0	86	13	13	44	27	1.83
41552641--41552734	40	2.3	40	82	7	111	39	25	19	15	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41552837--41553185	187	1.9	186	87	3	522	31	18	23	26	1.97
41553209--41553357	73	2.0	74	84	1	192	31	16	22	29	1.96
41552817--41553565	300	2.5	298	89	1	1131	32	17	23	26	1.97
41553213--41553371	74	2.2	73	81	3	185	32	17	23	27	1.97
41553293--41553622	114	2.9	112	78	5	367	30	18	23	26	1.98
41553642--41553716	16	4.5	17	93	3	127	33	0	9	57	1.31
41553642--41553716	33	2.3	33	93	4	125	33	0	9	57	1.31
41553746--41553771	7	3.7	7	100	0	52	15	0	38	46	1.46
41556851--41556990	25	5.4	25	74	9	86	47	20	1	30	1.58
41556851--41557255	9	46.0	9	74	13	317	46	20	0	32	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211