genome.fa.s14.2.7.7.80.10.50.1000.178.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  178  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52945457--52945520	33	1.9	34	83	3	85	4	25	0	70	1.06
52945468--52945522	15	3.8	15	73	9	51	1	27	0	70	0.97
52945540--52945574	3	11.7	3	87	0	52	0	60	0	40	0.97
52945574--52945624	20	2.5	20	100	0	102	0	35	0	64	0.94
52945658--52945722	27	2.4	27	86	0	85	7	33	30	27	1.85
52945924--52945985	7	9.5	6	78	15	52	29	3	0	67	1.06
52945924--52945985	13	4.8	12	75	13	61	29	3	0	67	1.06
52947012--52947072	13	4.7	13	78	13	63	39	16	1	42	1.58
52947073--52947154	26	3.1	25	77	8	83	26	24	4	43	1.74
52947095--52947141	13	3.6	13	85	5	60	29	25	6	38	1.81
52950998--52951168	68	2.5	70	81	4	195	35	17	5	41	1.72
52951613--52951643	15	2.0	16	93	6	55	45	6	0	48	1.28
52952003--52952089	10	9.0	10	79	13	76	57	0	1	41	1.06
52952003--52952061	19	3.2	19	80	4	66	59	0	1	38	1.08
52952021--52952089	19	3.7	19	75	17	56	60	0	1	37	1.06
52953781--52953810	6	4.8	6	95	4	51	70	16	13	0	1.18
52955219--52962088	371	18.1	369	75	10	4715	50	15	17	16	1.79
52955219--52962088	742	9.0	742	75	10	5454	50	15	17	16	1.79
52957907--52958104	96	2.1	96	88	3	292	47	20	10	20	1.79
52958542--52958584	15	2.8	15	83	13	52	72	6	11	9	1.29
52958542--52958589	16	3.1	16	80	14	55	68	8	12	10	1.39
52960021--52960060	17	2.5	15	84	15	53	72	5	20	2	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52960015--52960057	21	2.0	22	86	13	63	69	4	18	6	1.29
52960763--52960802	17	2.5	15	84	15	53	72	0	20	7	1.08
52960757--52960799	21	2.0	22	86	13	63	69	0	18	11	1.17
52961182--52961215	17	2.1	15	89	10	50	73	5	17	2	1.16
52961176--52961226	21	2.4	21	84	15	70	72	3	17	5	1.20
52960993--52962092	372	2.9	374	88	1	1596	51	14	18	16	1.77
52962036--52962149	57	2.0	57	98	0	219	44	17	14	22	1.86
52961289--52962862	807	2.0	803	85	3	2135	49	14	18	17	1.79
52962363--52962395	16	2.2	15	89	10	50	78	9	12	0	0.95
52962738--52962777	17	2.5	15	84	15	53	72	5	17	5	1.21
52962097--52962856	375	2.0	372	82	2	916	49	15	18	17	1.80
52963648--52963682	17	2.1	17	94	0	61	25	11	17	45	1.81
52967246--52967356	41	2.7	41	97	1	204	25	21	30	22	1.99
52969880--52969930	23	2.2	23	92	0	84	19	17	17	45	1.86
52969886--52969932	23	2.0	23	100	0	94	17	17	17	48	1.81
52974362--52974513	41	3.7	41	93	0	250	26	20	28	23	1.99
52975597--52975636	18	2.2	18	90	0	62	40	0	25	35	1.56
52983382--52983633	129	2.0	129	93	0	432	32	20	17	29	1.96
52984111--52984147	3	12.3	3	100	0	74	35	32	0	32	1.58
52984901--52984942	17	2.4	17	84	11	50	14	7	0	78	0.95
52984910--52984959	26	1.9	26	87	0	73	16	10	0	74	1.08
52984912--52984966	18	3.1	18	80	12	60	16	9	0	74	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52989802--52989875	17	4.1	17	79	11	69	40	1	1	56	1.16
52989816--52989879	29	2.2	29	88	2	94	37	3	1	57	1.24
52993767--52993823	25	2.3	25	93	0	96	21	24	19	35	1.96
52993767--52993834	25	2.7	25	88	4	84	23	22	22	32	1.98
52996885--52997041	42	3.8	42	83	5	135	27	25	21	26	1.99
52996914--52997046	42	3.2	42	84	3	162	29	25	18	27	1.98
52998629--52998658	15	1.9	16	93	6	53	60	10	6	23	1.52
53004872--53004937	30	2.2	30	86	0	87	24	21	33	21	1.97
53005820--53005874	25	2.2	25	100	0	110	21	23	7	47	1.76
53008322--53008346	13	1.9	13	100	0	50	24	0	16	60	1.36
53016202--53016497	50	5.8	50	79	6	267	23	27	21	27	1.99
53016723--53016766	17	2.6	17	96	0	79	11	27	6	54	1.61
53016851--53016908	30	1.9	30	82	6	73	32	24	6	36	1.82
53018875--53018923	9	5.4	9	87	0	62	44	22	6	26	1.76
53019030--53019073	18	2.4	18	80	0	52	15	2	40	40	1.60
53032630--53032673	23	1.9	23	81	9	54	43	2	6	47	1.42
53033908--53033935	3	9.3	3	100	0	56	32	0	0	67	0.91
53034272--53034321	19	2.5	20	75	12	50	42	14	2	42	1.56
53041458--53041648	92	2.1	92	92	0	319	29	23	15	31	1.95
53050435--53050463	15	1.9	15	100	0	58	27	27	13	31	1.94
53053203--53053354	73	2.1	73	97	0	286	36	18	11	33	1.87
53056951--53057006	20	2.8	20	97	2	105	10	35	28	25	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53062703--53062822	60	2.0	60	100	0	240	18	26	13	41	1.87
53068644--53068734	19	4.8	18	74	15	67	58	0	3	38	1.15
53068655--53068730	40	1.9	40	86	5	109	59	0	2	38	1.12
53068666--53068709	21	2.0	23	86	8	65	61	0	2	36	1.09
53068689--53068765	8	9.1	8	68	20	50	64	0	3	31	1.11
53072363--53072497	40	3.4	39	79	5	137	36	22	22	19	1.95
53072520--53072636	41	2.9	41	92	0	189	19	22	30	27	1.98
53073904--53074020	40	2.9	40	94	0	198	33	16	29	20	1.94
53073968--53074558	112	5.3	112	92	1	934	25	18	29	26	1.98
53073985--53074558	223	2.6	223	92	1	943	25	19	28	26	1.98
53075171--53075196	12	2.2	12	100	0	52	38	7	34	19	1.80
53075584--53075784	84	2.4	83	91	4	330	32	19	17	29	1.95
53076768--53076807	11	3.7	11	90	3	64	35	10	27	27	1.89
53078148--53078305	17	8.6	17	77	20	149	45	12	1	40	1.50
53078139--53078338	57	3.5	57	97	0	364	43	11	2	43	1.51
53078310--53078354	13	3.5	13	87	0	72	40	6	2	51	1.41
53078504--53078795	73	4.0	73	99	0	575	50	1	6	40	1.39
53078804--53078872	18	3.4	18	72	24	66	44	18	1	34	1.59
53078793--53079205	26	16.8	25	86	8	548	46	20	0	32	1.55
53078829--53078868	18	2.2	18	95	0	71	45	17	2	35	1.62
53078872--53078962	19	5.1	18	68	17	64	50	20	0	28	1.49
53078976--53079236	18	14.6	18	65	28	96	45	19	0	33	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53078798--53079205	197	2.1	196	95	1	728	46	20	0	32	1.55
53079197--53079250	9	5.7	10	79	20	55	42	20	0	37	1.52
53084696--53084766	21	3.4	21	78	0	79	35	18	43	2	1.65
53088813--53088971	21	7.6	21	69	5	88	40	16	25	16	1.90
53088821--53088971	42	3.6	42	81	3	169	41	16	25	16	1.89
53090686--53090751	26	2.5	26	76	14	64	53	0	0	46	1.00
53090681--53090732	9	5.8	9	78	14	54	57	0	0	42	0.98
53099570--53099648	33	2.4	32	79	10	88	26	22	15	35	1.94
53099464--53099679	105	2.1	100	84	5	272	26	24	16	32	1.96
53101781--53101844	29	2.2	29	75	5	67	39	21	12	26	1.89
53104367--53104416	14	3.5	14	78	13	57	28	10	2	60	1.40
53104650--53104693	22	2.0	22	91	8	72	72	2	9	15	1.19
53108409--53108461	24	2.2	24	82	0	61	37	9	1	50	1.46
53112776--53112881	40	2.7	41	83	4	137	36	19	22	20	1.95
53112942--53113180	41	5.8	41	89	0	343	23	20	26	29	1.99
53112948--53113180	123	1.9	123	91	0	385	23	20	26	30	1.99
53119569--53119890	43	7.5	43	82	3	346	23	18	28	28	1.98
53119569--53119890	85	3.8	86	80	6	332	23	18	28	28	1.98
53119507--53119890	128	3.0	126	77	6	371	23	18	28	29	1.98
53127119--53127163	18	2.4	19	85	14	67	51	20	6	22	1.70
53128475--53128852	188	2.0	189	90	0	596	29	22	20	26	1.99
53130450--53130698	131	1.9	130	94	2	437	37	16	16	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53131443--53131521	41	1.9	41	89	0	122	20	20	29	30	1.97
53136776--53136937	87	1.9	87	90	5	265	39	18	29	12	1.88
53136925--53136979	21	2.6	21	79	0	65	34	10	43	10	1.75
53137302--53137850	43	12.8	43	86	4	709	26	20	27	25	1.99
53138805--53138846	18	2.3	19	84	12	52	80	0	14	4	0.86
53144574--53144695	64	1.9	62	83	6	156	42	4	2	50	1.34
53146553--53146683	60	2.2	60	82	6	151	38	11	25	24	1.89
53146524--53146714	30	6.4	30	73	11	135	39	12	23	25	1.89
53154074--53154269	30	6.5	30	78	6	150	36	12	26	25	1.91
53154040--53154270	90	2.6	90	78	8	224	35	12	26	25	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211