genome.fa.s14.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  137  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40597317--40597386	23	3.0	23	81	4	79	44	17	1	37	1.57
40606597--40606652	20	2.8	20	88	0	94	51	21	0	26	1.48
40620894--40620931	19	2.0	19	89	0	58	63	10	0	26	1.27
40622959--40622992	11	3.1	11	91	0	59	17	32	2	47	1.63
40622955--40623008	22	2.5	22	83	16	69	22	29	1	46	1.62
40625106--40625543	125	3.5	125	91	0	698	29	21	17	31	1.96
40634778--40634817	19	2.1	19	100	0	80	25	20	22	32	1.98
40637324--40637392	29	2.4	28	81	9	86	31	2	1	63	1.18
40643204--40643249	23	2.0	23	86	0	65	43	23	15	17	1.87
40643363--40643421	27	2.4	23	78	13	57	30	22	3	44	1.69
40644369--40644404	16	2.2	16	90	0	54	0	36	0	63	0.94
40644640--40644671	5	6.6	5	92	7	57	59	0	0	40	0.97
40644634--40644668	14	2.6	14	95	4	63	60	0	0	40	0.97
40644635--40644699	20	3.2	20	76	12	71	55	1	0	43	1.09
40644640--40644699	19	3.2	19	76	6	68	55	1	0	43	1.10
40646280--40646387	33	3.3	33	77	5	137	25	21	18	35	1.96
40646279--40646422	66	2.2	66	90	5	229	25	22	18	34	1.96
40646298--40646420	33	3.7	32	75	10	113	26	21	17	33	1.96
40651901--40651932	7	4.4	7	96	4	55	84	0	15	0	0.63
40652336--40652368	7	5.0	7	92	7	52	69	0	15	15	1.19
40653594--40654186	87	6.8	87	91	0	936	29	22	22	24	1.99
40653995--40654128	42	3.1	42	62	17	103	32	24	21	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40654002--40654138	43	3.2	43	62	20	104	27	26	22	23	1.99
40655996--40656053	3	19.3	3	100	0	116	32	0	0	67	0.91
40657197--40657401	43	5.1	42	64	20	116	56	8	7	27	1.56
40657178--40657526	75	4.5	77	88	5	517	55	9	8	27	1.59
40657178--40657526	152	2.3	154	90	4	533	55	9	8	27	1.59
40657721--40657863	33	4.3	33	76	8	130	27	15	42	13	1.85
40657711--40657863	66	2.3	66	80	2	164	27	15	43	13	1.84
40659982--40660133	77	2.0	79	89	5	240	51	14	0	33	1.42
40660358--40660476	60	2.0	60	94	0	211	52	13	1	31	1.50
40661735--40661832	52	1.9	52	81	6	119	38	11	8	41	1.71
40661887--40661942	23	2.4	23	80	14	62	48	3	5	42	1.43
40661946--40661996	18	2.9	18	69	13	52	56	1	0	41	1.10
40664435--40664490	10	5.7	10	71	12	53	55	1	3	39	1.28
40666788--40666812	11	2.3	11	100	0	50	16	0	0	84	0.63
40668851--40668882	6	5.3	6	100	0	64	81	0	0	18	0.70
40680622--40680658	18	2.1	18	89	0	56	64	2	10	21	1.37
40698731--40698776	6	8.0	6	76	9	51	78	2	2	17	0.96
40698732--40698779	11	4.3	11	78	2	51	81	2	2	14	0.88
40700237--40700268	16	2.1	15	94	5	55	71	0	9	18	1.12
40700234--40700271	16	2.6	14	81	18	51	71	0	10	18	1.14
40700487--40700538	23	2.3	23	80	12	63	69	9	3	17	1.31
40710624--40710670	20	2.3	20	82	7	60	59	0	2	38	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40711029--40711068	20	2.1	19	90	4	62	57	0	2	40	1.12
40712784--40712843	16	3.6	16	70	14	50	0	25	1	73	0.93
40719846--40719911	28	2.3	29	82	7	82	40	0	0	59	0.98
40720439--40720494	27	2.1	27	100	0	112	39	10	7	42	1.67
40724186--40724436	85	3.0	85	85	0	322	27	16	19	35	1.94
40727799--40727836	12	3.2	12	81	11	51	57	0	13	28	1.36
40728987--40729102	4	29.0	4	94	0	205	25	0	25	48	1.57
40730648--40730710	25	2.6	24	73	9	65	31	19	22	26	1.97
40738315--40738368	25	2.1	26	86	10	76	31	3	1	62	1.23
40740551--40740596	13	3.4	14	79	8	51	78	0	19	2	0.86
40743408--40743455	10	4.6	10	77	10	51	60	2	0	37	1.09
40744285--40744357	11	6.9	11	71	16	57	39	2	0	57	1.13
40744314--40744357	12	3.8	12	81	6	54	38	2	0	59	1.10
40744314--40744362	23	2.2	22	88	3	71	36	2	0	61	1.08
40745928--40745981	16	3.3	16	82	5	72	40	1	0	57	1.09
40745928--40745979	17	3.1	17	80	8	70	42	1	0	55	1.10
40747122--40747154	2	16.5	2	100	0	66	48	0	0	51	1.00
40748695--40748730	1	36.0	1	88	0	54	94	5	0	0	0.31
40749558--40749612	21	2.6	21	77	5	58	50	3	1	43	1.30
40761305--40761335	9	3.3	9	95	4	53	58	0	0	41	0.98
40761851--40761915	11	6.3	11	70	24	52	44	0	3	52	1.16
40765389--40765422	3	11.3	3	87	0	50	29	2	0	67	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40767407--40767457	26	2.0	26	92	0	84	25	23	9	41	1.85
40770625--40770742	41	2.9	41	90	0	182	35	23	17	22	1.95
40772084--40772109	13	2.0	13	100	0	52	46	23	0	30	1.53
40773062--40773159	32	3.3	32	64	21	95	62	4	19	14	1.47
40773052--40773170	56	2.1	56	98	1	231	63	3	21	11	1.41
40773151--40773185	15	2.2	16	90	5	54	82	0	14	2	0.77
40773620--40773645	12	2.2	12	100	0	52	30	0	19	50	1.48
40781133--40781213	37	2.2	36	81	14	103	17	4	4	72	1.20
40788379--40788796	230	1.8	230	86	1	613	30	17	16	35	1.92
40790102--40790158	27	2.1	27	96	0	105	43	14	22	19	1.86
40795009--40795102	47	2.0	47	100	0	188	25	12	29	31	1.93
40796898--40797082	40	4.6	40	88	4	257	24	28	22	23	1.99
40804895--40805077	40	4.6	40	88	4	253	26	28	21	24	1.99
40812039--40812177	35	3.9	35	68	16	99	23	20	17	38	1.93
40821712--40821868	81	1.9	81	85	2	217	40	18	17	22	1.91
40821673--40821841	27	6.3	27	81	8	182	42	17	17	22	1.89
40821673--40821876	27	7.6	26	77	10	92	41	18	17	23	1.90
40821751--40821897	27	5.5	26	74	13	95	40	16	19	23	1.91
40821712--40821897	81	2.3	81	83	5	216	40	17	18	23	1.91
40821892--40821945	24	2.2	24	87	6	74	33	7	22	37	1.82
40822039--40822104	27	2.5	27	83	9	91	18	22	22	36	1.95
40822150--40822336	32	5.8	32	87	0	230	23	18	19	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40822144--40822336	96	2.0	96	85	2	262	23	18	18	38	1.93
40824100--40824155	30	2.0	27	86	10	76	23	30	32	14	1.94
40826488--40826637	70	2.1	70	91	0	246	28	13	25	32	1.93
40828337--40828418	25	3.3	25	81	11	80	29	21	20	28	1.98
40831106--40831217	40	2.8	40	79	1	127	30	16	29	23	1.96
40831431--40831535	27	4.0	26	81	3	129	41	18	16	23	1.89
40831548--40831667	54	2.2	53	84	7	145	35	18	25	20	1.95
40831548--40831667	27	4.5	26	80	11	127	35	18	25	20	1.95
40831685--40831806	24	5.1	24	85	0	154	27	7	21	44	1.78
40831882--40831946	27	2.4	27	85	9	89	18	21	24	35	1.96
40831995--40832147	32	4.8	32	76	6	157	20	21	20	37	1.95
40846456--40846702	50	4.8	50	83	4	273	21	28	22	27	1.99
40853900--40853930	11	2.8	11	95	0	53	64	0	6	29	1.18
40856848--40856980	30	4.6	28	75	3	77	38	22	17	21	1.93
40856925--40856999	30	2.5	30	77	0	87	41	22	13	22	1.89
40860449--40860484	18	1.9	19	88	5	56	13	13	8	63	1.50
40875884--40875922	15	2.9	13	82	17	53	2	23	0	74	0.94
40887810--40887913	48	2.2	48	89	0	154	25	27	13	33	1.93
40888772--40888809	13	3.2	12	85	10	51	5	13	0	81	0.85
40893233--40893353	50	2.4	50	85	0	152	21	28	23	27	1.99
40896927--40896981	26	2.1	26	82	0	65	30	21	1	45	1.62
40899636--40899750	57	2.0	58	86	1	160	29	18	6	45	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40904664--40904757	27	3.5	27	76	11	84	25	24	8	41	1.83
40904850--40904912	27	2.3	27	88	2	90	30	20	15	33	1.94
40906329--40906544	30	7.2	30	79	7	129	20	26	14	38	1.91
40906385--40906456	29	2.5	29	93	0	117	13	29	13	43	1.83
40906444--40906544	30	3.3	31	90	8	154	24	25	11	37	1.90
40909351--40909413	30	2.0	31	84	9	83	52	12	4	30	1.60
40909411--40909456	20	2.3	20	75	17	51	56	4	2	36	1.31
40920063--40920335	136	2.0	136	89	2	415	34	17	24	22	1.96
40922928--40922963	18	1.9	19	88	5	56	25	11	16	47	1.79
40923253--40923327	37	2.0	37	100	0	150	29	8	16	46	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211