genome.fa.s14.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  45  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12024249--12024365	41	2.9	41	81	7	105	30	27	21	20	1.98
12032177--12032293	41	2.9	41	88	0	171	29	20	28	22	1.98
12044468--12044509	9	4.6	9	94	5	75	69	0	0	30	0.89
12044471--12044519	18	2.7	19	75	12	59	65	0	0	34	0.93
12047325--12047613	126	2.3	126	90	1	454	28	19	17	33	1.95
12047647--12047925	96	2.9	96	89	3	438	38	20	1	40	1.59
12047693--12047853	53	3.2	53	67	20	164	37	19	1	40	1.60
12053668--12053724	29	2.0	28	82	3	69	21	33	1	43	1.63
12053708--12053756	2	24.5	2	95	0	89	0	48	2	48	1.12
12054106--12054130	2	12.5	2	100	0	50	0	0	48	52	1.00
12060138--12060178	21	2.0	21	90	9	66	26	17	26	29	1.97
12060553--12060597	16	2.7	17	82	6	56	40	0	0	60	0.97
12060592--12060691	28	3.3	29	84	10	114	34	3	0	63	1.10
12060659--12060698	21	1.9	21	89	0	62	37	2	0	60	1.11
12060658--12060716	22	2.8	21	80	14	59	40	1	3	54	1.27
12062566--12062609	18	2.5	17	85	10	61	38	0	9	52	1.33
12066459--12066509	22	2.4	21	77	6	59	45	7	3	43	1.51
12073724--12073825	47	2.2	48	85	8	147	12	10	2	73	1.20
12073762--12073813	19	2.8	18	82	5	59	15	9	1	73	1.18
12073811--12073837	14	1.9	14	100	0	54	7	11	0	81	0.87
12073735--12073847	25	4.6	25	74	13	85	10	10	2	76	1.13
12073690--12073852	36	4.6	34	73	9	114	11	10	2	76	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12074345--12074384	7	5.7	7	90	0	62	25	0	5	70	1.08
12076228--12076275	3	16.0	3	82	0	60	31	2	4	62	1.26
12080589--12080634	13	3.4	13	77	11	56	69	8	0	21	1.15
12080629--12080658	9	3.3	9	100	0	60	80	0	10	10	0.92
12080661--12080697	17	2.2	17	90	0	56	75	0	24	0	0.80
12080629--12080682	9	5.7	10	85	10	53	75	0	16	7	1.01
12080661--12080695	11	3.2	11	91	0	52	77	0	22	0	0.78
12082194--12082331	66	2.1	66	100	0	276	24	25	23	26	2.00
12082348--12082476	51	2.5	51	70	9	118	27	19	25	27	1.99
12082486--12082843	132	2.7	132	90	2	558	30	19	24	25	1.98
12082823--12082969	44	3.3	44	88	1	188	27	19	25	27	1.98
12082860--12082994	44	3.1	44	81	6	114	30	17	24	27	1.97
12084181--12084260	3	26.0	3	84	5	79	25	1	8	65	1.29
12084218--12084265	12	3.7	13	91	8	64	29	0	2	68	1.01
12087465--12087547	33	2.5	32	77	9	87	50	2	1	45	1.22
12087513--12087591	22	3.5	22	94	1	131	53	0	0	46	1.00
12087513--12087811	45	6.8	44	72	16	133	55	1	0	42	1.15
12087653--12087814	43	3.8	40	80	14	125	56	0	0	43	1.04
12087516--12087814	21	13.8	21	72	18	170	55	1	0	42	1.15
12087674--12087805	43	3.0	43	84	10	144	55	0	0	43	1.05
12087815--12087911	25	3.6	26	74	18	83	72	5	10	12	1.27
12087832--12087883	15	3.5	14	77	12	50	71	1	9	17	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12089235--12089297	11	5.8	11	71	17	60	65	1	0	33	1.03
12089236--12089297	22	2.9	21	79	11	72	66	1	0	32	1.02
12089258--12089283	12	2.2	12	100	0	52	76	0	0	23	0.78
12090665--12090724	22	2.7	23	74	10	70	40	13	18	28	1.88
12093541--12093577	9	4.1	9	92	0	65	45	13	10	29	1.77
12094680--12094716	19	1.9	19	88	0	56	13	0	21	64	1.27
12097530--12097765	113	2.1	114	82	5	282	32	19	22	25	1.97
12098498--12098581	21	4.0	21	70	11	64	20	2	29	47	1.62
12098918--12098980	21	3.0	21	81	4	74	26	1	33	38	1.66
12098925--12098980	7	7.9	7	76	9	51	28	1	32	37	1.68
12101931--12102022	9	10.2	9	86	0	130	50	16	1	32	1.52
12101867--12102029	54	3.0	55	85	10	205	51	14	1	32	1.50
12101879--12102029	27	5.7	25	83	11	162	51	15	1	31	1.51
12105194--12105352	41	3.9	41	83	6	205	27	20	30	22	1.98
12105207--12105393	41	4.6	41	83	4	200	28	19	29	21	1.98
12106732--12106797	21	3.2	20	86	4	87	33	19	43	3	1.66
12106782--12106809	12	2.3	12	100	0	56	39	17	42	0	1.50
12107245--12107539	43	7.0	42	82	6	267	26	22	19	31	1.98
12107246--12107558	85	3.7	84	78	6	274	27	22	20	30	1.98
12107289--12107551	43	6.2	43	85	2	293	26	23	18	31	1.97
12109607--12109919	22	14.2	21	79	8	311	43	17	9	29	1.81
12109630--12109712	11	7.5	11	67	15	55	43	18	9	28	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12109616--12109922	44	7.0	44	89	0	461	42	16	10	29	1.81
12110701--12110856	43	3.6	42	78	10	129	29	28	17	25	1.97
12113588--12113655	28	2.5	28	83	4	95	47	1	4	47	1.31
12117949--12117998	20	2.5	19	80	6	55	34	24	8	34	1.84
12118161--12118261	23	4.3	23	86	5	123	33	19	25	20	1.97
12118149--12118261	46	2.4	46	82	10	147	32	20	24	22	1.98
12119678--12119733	24	2.3	24	100	0	112	48	30	5	16	1.68
12123380--12123432	24	2.2	25	86	3	72	28	22	3	45	1.70
12126540--12126585	8	5.6	9	82	14	55	84	0	10	4	0.75
12126555--12126588	9	3.9	9	88	7	52	82	0	14	2	0.79
12126540--12126588	17	2.9	17	85	8	66	83	0	12	4	0.77
12127474--12128528	100	10.7	100	81	5	1106	32	20	19	27	1.97
12127480--12128528	50	21.2	50	69	5	473	32	20	19	27	1.97
12128582--12128749	89	1.9	89	81	7	207	30	19	20	29	1.97
12128539--12128746	44	4.8	44	82	7	178	30	19	19	30	1.96
12137223--12137268	9	5.3	9	74	10	51	39	13	8	39	1.75
12137227--12137277	25	2.0	26	84	3	68	41	11	5	41	1.66
12137332--12137381	20	2.5	19	80	6	55	34	24	8	34	1.84
12137530--12137608	23	3.3	23	82	8	79	34	21	25	18	1.96
12139906--12139934	15	1.9	15	100	0	58	41	37	0	20	1.53
12144905--12144954	21	2.3	22	82	3	66	36	6	16	42	1.72
12145730--12145772	10	4.1	10	79	8	50	58	2	0	39	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12145730--12145772	21	2.0	21	86	0	59	58	2	0	39	1.11
12146667--12146715	24	2.0	24	88	7	73	38	2	2	57	1.22
12150857--12150893	13	2.8	14	84	12	51	13	2	0	83	0.74
12151334--12151384	6	8.2	6	81	16	59	76	0	1	21	0.88
12151335--12151373	19	2.2	19	90	9	64	79	0	2	17	0.84
12151337--12151384	13	3.8	13	78	13	55	75	0	2	22	0.91
12162102--12162133	9	3.6	9	91	0	55	46	15	12	25	1.81
12162097--12162133	18	2.1	18	94	0	65	45	13	10	29	1.77
12163622--12163680	2	30.5	2	79	6	59	49	5	0	45	1.24
12163605--12163679	32	2.3	32	95	2	132	46	5	1	46	1.33
12165077--12165228	43	3.6	43	77	13	152	28	23	19	28	1.98
12169097--12169130	16	2.1	16	94	0	59	41	2	5	50	1.42
12169201--12169248	25	1.9	25	100	0	96	47	8	4	39	1.53
12169314--12169338	8	3.1	8	100	0	50	24	12	0	64	1.27
12170259--12170290	8	4.2	8	84	15	50	12	12	50	25	1.75
12170259--12170308	22	2.3	22	86	6	66	16	10	50	24	1.75
12176208--12176233	13	2.0	13	100	0	52	23	0	23	53	1.46
12183714--12183805	27	3.5	26	86	3	121	44	18	19	17	1.87
12184144--12184233	28	3.2	28	83	0	117	25	27	17	28	1.98
12186220--12186263	20	2.2	20	100	0	88	31	13	29	25	1.94
12188323--12188377	26	2.1	26	100	0	110	32	18	10	38	1.85
12189016--12189071	22	2.5	23	82	2	69	51	1	1	44	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12189047--12189086	16	2.5	16	91	0	62	47	2	7	42	1.45
12189159--12189202	9	5.1	9	86	10	65	34	0	11	54	1.36
12189156--12189193	16	2.4	16	90	0	58	36	0	10	52	1.36
12189190--12189325	68	2.0	68	97	0	254	36	7	10	45	1.66
12196980--12197050	29	2.5	30	79	9	76	46	1	2	49	1.25
12196980--12197052	28	2.6	29	78	10	78	45	1	2	50	1.24
12202611--12202767	41	3.8	40	81	3	161	25	20	22	31	1.98
12202941--12202986	7	6.4	7	82	2	56	19	0	36	43	1.51
12203004--12203033	15	2.0	15	93	0	51	20	0	36	43	1.52
12203340--12203423	21	4.0	22	81	7	61	23	0	40	35	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211