genome.fa.s14.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  144  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42859398--42859462	32	2.1	32	94	2	114	47	10	9	32	1.70
42865594--42865657	31	2.1	31	100	0	128	46	12	9	31	1.73
42866034--42866141	9	12.2	9	71	14	64	49	15	3	31	1.62
42866041--42866079	20	2.0	19	95	5	69	53	15	0	30	1.42
42867763--42867813	21	2.4	21	81	15	61	41	15	41	1	1.58
42872186--42872234	17	2.9	17	84	0	71	30	22	22	24	1.99
42872780--42872817	20	2.0	20	84	5	51	39	5	7	47	1.55
42875884--42876073	89	2.1	89	82	4	222	43	28	2	24	1.68
42876064--42876115	14	3.7	14	84	5	61	30	42	0	26	1.56
42876599--42876788	82	2.3	83	84	4	258	32	25	17	24	1.97
42876600--42876787	41	4.6	41	85	2	234	31	25	17	25	1.97
42884292--42884356	28	2.3	28	89	0	94	27	20	9	43	1.82
42884826--42884898	21	3.5	21	72	10	69	45	24	13	16	1.84
42884810--42884914	41	2.6	41	85	0	147	41	25	18	14	1.88
42884847--42884923	20	3.8	20	76	10	75	41	23	20	14	1.89
42885205--42886924	571	3.0	571	97	0	3206	38	23	9	29	1.86
42887636--42887795	43	3.7	43	89	2	225	30	26	16	26	1.96
42887602--42887801	86	2.3	85	83	3	258	30	25	16	28	1.96
42894849--42894902	27	2.0	27	85	7	74	38	3	0	57	1.17
42898427--42898629	27	7.5	27	83	3	230	43	18	16	21	1.88
42898427--42898640	81	2.6	81	81	5	254	42	19	15	21	1.89
42898428--42898638	54	3.9	54	85	6	284	42	19	16	21	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42901030--42901090	25	2.4	25	83	5	79	37	3	0	59	1.14
42915057--42915154	25	4.0	24	76	11	99	30	20	24	24	1.98
42917907--42917938	12	2.6	13	85	14	50	56	6	0	37	1.25
42922012--42922048	17	2.2	17	100	0	74	16	10	40	32	1.83
42928154--42928215	31	2.0	31	90	6	99	40	16	6	37	1.74
42931002--42931573	104	5.6	103	95	1	979	31	29	19	19	1.96
42931240--42931289	26	1.9	26	95	0	91	30	34	24	12	1.91
42931447--42931494	25	1.9	25	95	0	87	31	31	25	12	1.92
42931002--42931573	207	2.8	207	95	0	997	31	29	19	19	1.96
42931901--42931965	30	2.2	29	81	8	76	30	27	6	35	1.81
42931908--42931965	30	1.9	30	85	0	80	31	24	6	37	1.82
42939996--42940030	18	1.9	18	88	11	54	22	2	28	45	1.67
42940338--42940493	27	5.8	27	75	3	125	35	12	21	30	1.90
42940338--42940481	54	2.7	54	78	0	153	38	11	18	30	1.87
42941621--42941705	43	2.0	43	86	4	118	50	1	22	25	1.56
42942593--42942631	17	2.3	17	90	0	69	33	17	5	43	1.72
42943675--42943776	36	2.8	36	86	0	141	28	15	14	41	1.87
42965363--42965464	44	2.3	46	77	13	113	44	6	21	27	1.78
42965455--42965489	12	2.9	12	100	0	70	51	0	25	22	1.48
42966667--42966728	27	2.2	29	85	8	92	16	17	32	33	1.92
42966667--42966739	27	2.6	27	82	4	83	15	15	36	32	1.88
42967755--42967781	14	1.9	14	100	0	54	51	0	7	40	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42969278--42969448	45	3.8	45	88	1	236	35	18	19	26	1.95
42969282--42969470	90	2.1	90	83	2	227	37	18	19	24	1.94
42969462--42969582	45	2.6	46	81	7	138	42	15	23	18	1.88
42969829--42969926	50	2.0	50	91	0	160	44	6	21	27	1.75
42970625--42970715	43	2.1	43	89	2	139	43	10	10	34	1.75
42977116--42977177	7	8.7	7	81	10	54	38	33	0	27	1.57
42977112--42977177	22	3.0	22	71	8	64	39	33	0	27	1.57
42978932--42979225	41	7.2	41	75	10	212	32	26	18	22	1.97
42978958--42979217	81	3.2	80	78	10	251	33	26	17	22	1.96
42978955--42979217	82	3.2	81	78	8	241	33	26	17	22	1.96
42978933--42979239	122	2.5	123	81	5	320	32	27	17	21	1.96
42979270--42979345	39	1.9	39	84	5	100	22	18	19	39	1.92
42983058--42983287	40	5.8	40	92	1	336	24	28	21	25	1.99
42991708--42991748	12	3.6	12	74	12	50	4	24	0	70	1.06
42991707--42991758	22	2.4	22	100	0	104	3	21	0	75	0.97
42991707--42991755	21	2.3	20	86	10	71	4	20	0	75	0.96
42991817--42991850	16	2.1	16	89	10	52	2	17	0	79	0.86
42992628--42992683	22	2.5	23	82	2	69	51	1	1	44	1.22
42992659--42992698	16	2.5	16	91	0	62	47	2	7	42	1.45
42992709--42992848	59	2.4	59	98	0	271	39	4	9	47	1.55
42992830--42992866	9	4.1	9	100	0	74	32	0	10	56	1.34
42992961--42993008	23	2.0	24	84	11	64	54	2	0	43	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43001583--43001657	37	2.0	37	97	0	141	33	17	0	49	1.47
43006724--43006771	13	3.6	13	78	13	53	64	2	2	31	1.16
43006934--43006974	20	2.0	20	100	0	82	29	9	14	46	1.77
43010039--43010087	2	24.5	2	95	0	89	2	0	46	51	1.12
43012337--43012374	19	2.0	20	94	5	69	23	10	10	55	1.65
43046742--43046772	15	2.0	16	93	6	55	67	12	0	19	1.22
43048725--43048760	18	2.1	16	90	10	54	30	5	2	61	1.33
43052532--43052643	57	2.0	57	87	3	163	25	25	18	30	1.98
43058163--43058338	50	3.5	50	87	0	244	26	22	28	21	1.99
43067066--43067093	6	4.7	6	100	0	56	53	0	28	17	1.44
43070808--43070866	23	2.6	23	80	0	73	18	10	28	42	1.83
43070837--43070881	23	2.0	23	81	0	54	13	13	26	46	1.80
43078663--43078700	18	2.1	19	85	5	51	42	18	0	39	1.50
43103101--43103138	20	1.9	20	89	10	60	23	10	13	52	1.71
43115987--43116026	6	6.7	6	88	0	62	15	0	5	80	0.88
43119427--43119668	133	1.8	134	86	2	353	30	15	21	32	1.94
43122329--43122357	15	1.9	15	100	0	58	55	6	0	37	1.27
43124122--43124146	12	2.1	12	100	0	50	48	8	16	28	1.74
43128240--43128351	56	2.0	56	91	0	179	40	28	5	25	1.78
43131497--43131537	19	2.1	19	86	9	55	41	0	4	53	1.22
43132203--43132250	23	2.0	25	88	8	73	31	0	2	66	1.03
43132203--43132250	25	2.0	23	84	15	62	31	0	2	66	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43133168--43133230	30	2.1	30	93	0	108	26	1	12	58	1.43
43133344--43133377	12	2.8	12	90	0	50	67	0	0	32	0.91
43144174--43144242	28	2.6	26	74	19	70	21	2	5	69	1.23
43154411--43154536	29	4.3	29	78	6	103	26	14	23	36	1.93
43156063--43156094	17	2.0	17	88	11	50	50	0	12	37	1.41
43158090--43158168	39	2.0	39	87	4	115	30	6	11	51	1.62
43161738--43161769	15	2.0	17	88	11	50	28	31	25	15	1.96
43164742--43164772	10	3.1	10	90	0	53	25	9	12	51	1.70
43165052--43165161	32	3.6	32	69	18	88	27	25	16	30	1.96
43165047--43165220	61	2.9	61	83	0	224	28	24	16	31	1.96
43167139--43167177	18	2.2	18	90	0	60	58	7	2	30	1.39
43169570--43169594	10	2.5	10	100	0	50	60	0	8	32	1.26
43174466--43174496	14	2.2	14	100	0	62	19	19	0	61	1.35
43176349--43176524	46	3.8	46	76	12	189	30	29	19	20	1.97
43176356--43176527	93	1.8	93	92	0	290	29	29	19	20	1.97
43176398--43176536	47	3.0	46	73	16	126	30	28	17	22	1.97
43183485--43183659	46	3.8	46	78	13	205	29	29	20	20	1.98
43183492--43183663	93	1.8	93	94	0	308	28	29	20	20	1.98
43193762--43193868	20	5.4	19	72	6	88	40	24	18	16	1.91
43193753--43193894	40	3.6	39	80	3	142	38	22	19	20	1.94
43193793--43193947	80	1.9	79	83	7	197	36	22	21	18	1.95
43194698--43194793	21	4.8	19	83	9	129	39	10	15	34	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43194699--43194782	40	2.0	41	90	4	134	40	10	14	34	1.80
43194698--43194800	40	2.7	38	81	14	129	39	9	16	33	1.81
43194772--43194816	23	2.0	23	91	4	74	37	4	17	40	1.70
43194782--43194826	23	2.0	23	86	4	65	33	4	15	46	1.66
43196108--43196304	98	2.0	98	97	0	376	28	9	23	37	1.87
43201930--43202269	44	7.7	44	64	12	151	29	20	26	24	1.99
43201904--43202308	132	3.1	132	93	0	684	30	20	25	23	1.98
43202401--43202528	45	2.9	45	84	12	174	27	18	28	25	1.98
43202323--43202518	83	2.3	87	81	10	208	27	20	25	26	1.99
43202401--43202518	44	2.7	44	84	13	170	26	20	27	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211