genome.fa.s14.2.7.7.80.10.50.1000.157.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  157  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46491981--46492188	89	2.3	89	85	1	229	29	20	23	26	1.99
46495163--46495214	27	1.9	27	84	0	68	46	5	0	48	1.26
46496166--46496195	3	10.0	3	100	0	60	33	0	0	66	0.92
46497466--46497520	18	2.9	18	75	22	51	32	1	0	65	1.03
46499474--46499509	19	1.9	18	94	5	63	50	5	16	27	1.68
46505029--46505235	51	4.1	50	77	12	181	24	14	29	31	1.94
46505237--46505331	45	2.1	45	92	0	163	26	18	24	30	1.98
46507273--46507340	17	4.1	17	77	5	77	20	16	47	16	1.83
46509209--46509287	17	4.7	17	80	1	79	21	12	46	18	1.82
46509202--46509287	34	2.6	33	81	3	100	23	12	45	18	1.84
46509209--46509308	50	2.0	51	82	9	125	25	13	44	18	1.85
46509771--46509823	23	2.3	23	81	12	65	32	13	24	30	1.93
46510063--46510580	108	4.8	107	77	5	429	38	12	18	30	1.88
46510030--46510580	54	10.2	54	74	7	372	38	13	18	29	1.89
46510698--46510779	29	2.8	28	89	7	119	45	6	32	15	1.71
46512208--46512241	3	11.0	3	87	6	50	61	0	2	35	1.11
46513758--46514594	218	3.8	217	90	1	1248	27	25	18	28	1.98
46513779--46514586	44	18.5	44	69	10	383	27	25	18	28	1.98
46513758--46514594	435	1.9	435	89	0	1300	27	25	18	28	1.98
46516650--46516683	17	2.1	17	94	5	61	64	5	5	23	1.38
46520485--46520641	29	5.4	29	80	3	181	36	13	26	24	1.92
46520485--46520728	58	4.2	58	77	3	231	37	13	25	22	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46520507--46520742	29	8.1	28	79	3	175	37	15	24	22	1.93
46524642--46524693	13	3.9	13	80	7	52	17	5	9	67	1.38
46528067--46528119	22	2.3	22	87	6	70	56	0	9	33	1.32
46528515--46528563	18	2.7	19	82	17	61	51	0	10	38	1.36
46528535--46528587	3	17.0	3	81	14	63	60	0	5	33	1.20
46528530--46528587	31	1.9	31	89	3	91	58	0	6	34	1.25
46528536--46528587	16	3.3	16	82	15	72	59	0	5	34	1.21
46529926--46531271	89	15.1	89	81	4	1316	29	23	15	30	1.96
46529896--46531271	134	10.3	133	82	3	1289	29	23	15	30	1.96
46529898--46531271	579	2.4	579	90	1	2142	29	23	15	30	1.96
46532566--46532629	27	2.3	28	84	10	87	17	21	0	60	1.35
46532583--46532620	20	2.0	20	89	5	60	15	21	0	63	1.31
46537399--46537451	22	2.3	23	83	6	63	54	0	9	35	1.33
46537860--46537909	3	16.0	3	80	15	57	60	0	6	34	1.21
46537860--46537909	13	4.0	12	80	17	57	60	0	6	34	1.21
46548916--46549013	27	3.7	25	78	11	88	28	11	30	29	1.91
46560189--46560227	19	2.1	19	95	0	69	38	20	2	38	1.66
46570570--46570624	21	2.5	23	77	14	62	41	1	23	32	1.65
46575059--46575124	27	2.4	27	87	0	87	27	15	25	31	1.95
46581753--46581803	25	2.0	26	88	11	79	52	1	5	39	1.37
46581754--46581818	27	2.5	26	73	9	60	49	3	9	38	1.51
46582510--46582551	20	2.2	19	87	8	59	9	16	7	66	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46585040--46585082	13	3.2	13	77	6	50	25	2	13	58	1.48
46593192--46593262	29	2.4	29	97	0	133	52	14	12	21	1.74
46597852--46597974	55	2.2	56	88	2	176	26	12	28	33	1.92
46597852--46597974	28	4.4	28	90	2	176	26	12	28	33	1.92
46597877--46597987	28	4.0	27	90	3	116	28	11	26	33	1.91
46603031--46603153	55	2.2	56	88	2	176	26	12	27	34	1.92
46603031--46603153	28	4.4	28	90	2	176	26	12	27	34	1.92
46603056--46603166	28	4.0	27	90	3	116	28	11	25	34	1.91
46608216--46608338	55	2.2	56	88	2	176	26	12	28	33	1.92
46608216--46608338	28	4.4	28	90	2	176	26	12	28	33	1.92
46608241--46608351	28	4.0	27	90	3	116	28	11	26	33	1.91
46616410--46616532	55	2.2	56	88	2	176	26	12	28	33	1.92
46616410--46616532	28	4.4	28	90	2	176	26	12	28	33	1.92
46616435--46616545	28	4.0	27	90	3	116	28	11	26	33	1.91
46619222--46619361	37	3.6	39	78	11	144	31	24	18	25	1.98
46619250--46619361	37	2.8	40	82	9	149	32	23	20	24	1.98
46620237--46620291	12	4.6	12	84	8	58	0	23	0	76	0.79
46620249--46620287	20	2.0	20	90	5	62	0	20	0	79	0.73
46621733--46621902	13	12.8	13	71	18	111	35	16	2	45	1.63
46621733--46621903	27	6.4	27	71	18	101	35	16	2	45	1.62
46621731--46621903	40	4.3	40	88	4	260	34	16	2	45	1.63
46624342--46624495	25	6.2	25	71	13	111	27	16	24	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46624339--46624542	50	4.1	50	82	4	234	29	16	24	30	1.96
46629748--46629791	18	2.5	17	78	10	52	40	15	2	40	1.60
46636685--46636772	7	11.9	7	82	12	97	26	3	0	70	1.03
46636685--46636765	4	20.5	4	70	25	57	25	2	0	71	0.98
46637779--46637825	10	4.7	10	79	7	51	74	2	0	23	0.93
46638404--46638438	15	2.4	15	90	4	54	48	0	8	42	1.33
46638468--46638510	10	4.3	10	75	0	50	25	9	0	65	1.22
46640232--46640272	18	2.3	19	79	12	50	21	41	21	14	1.89
46646872--46646910	20	1.9	21	94	5	71	43	0	0	56	0.99
46646886--46646917	12	2.7	12	95	0	55	43	0	0	56	0.99
46646874--46647006	61	2.2	59	81	10	164	44	3	2	49	1.32
46647554--46647605	25	2.1	25	100	0	104	42	3	15	38	1.65
46650211--46650249	19	2.1	19	90	0	60	46	10	15	28	1.78
46655506--46655636	35	3.6	35	72	11	111	19	21	23	35	1.96
46655462--46655745	75	3.8	75	85	0	345	22	19	21	36	1.95
46662259--46662357	47	2.1	47	90	0	153	19	13	22	45	1.84
46664559--46664605	19	2.4	21	79	13	64	10	17	0	72	1.12
46666543--46666702	42	3.8	42	75	6	135	17	24	16	41	1.89
46666546--46666702	84	1.9	84	82	2	199	17	24	16	40	1.90
46669148--46669180	16	2.1	16	100	0	66	72	12	0	15	1.12
46678119--46678175	26	2.2	26	81	12	64	43	22	19	14	1.86
46682223--46682261	13	2.7	14	84	15	53	76	2	5	15	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46683464--46683551	39	2.3	39	86	2	124	42	3	6	47	1.47
46691864--46691936	13	5.5	13	80	9	76	36	20	0	42	1.52
46691849--46691933	40	2.1	40	84	4	109	37	20	1	41	1.60
46691877--46691945	27	2.6	26	86	4	102	33	21	0	44	1.53
46691877--46691945	13	5.2	13	72	16	61	33	21	0	44	1.53
46691866--46691945	40	2.0	40	87	4	117	36	22	0	41	1.54
46698335--46698512	51	3.5	51	77	5	164	25	16	27	30	1.96
46698865--46698907	19	2.3	19	100	0	86	46	0	27	25	1.53
46703072--46703254	51	3.6	51	76	5	165	25	17	26	31	1.97
46703072--46703264	101	1.9	101	86	3	271	24	17	26	30	1.97
46708313--46708377	19	3.4	19	77	10	62	29	10	21	38	1.87
46708329--46708379	18	2.8	19	75	16	54	31	9	25	33	1.88
46715603--46715641	18	2.1	19	85	9	53	2	7	12	76	1.09
46718860--46718899	15	2.7	15	92	0	62	70	0	7	22	1.12
46719857--46719968	44	2.5	44	82	2	136	29	21	18	30	1.97
46720043--46720666	169	3.7	169	91	1	991	26	27	17	28	1.97
46720698--46720896	44	5.1	37	72	16	152	31	25	18	25	1.97
46720700--46720803	34	3.0	34	85	4	127	28	25	21	25	1.99
46720785--46720932	44	3.4	43	89	3	208	31	23	20	25	1.98
46728736--46728777	12	3.6	12	81	15	52	78	4	0	16	0.91
46729213--46729270	28	2.0	31	86	10	86	48	0	8	43	1.34
46729254--46729278	3	8.3	3	100	0	50	68	0	0	32	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46730690--46730714	13	1.9	13	100	0	50	64	0	4	32	1.12
46730736--46730760	12	2.1	12	100	0	50	76	0	16	8	1.02
46735507--46735546	21	1.9	21	85	10	55	42	0	5	52	1.23
46736183--46736227	23	2.0	23	100	0	90	66	0	6	26	1.16
46747152--46747194	14	3.2	13	84	12	52	55	2	2	39	1.25
46750471--46750504	17	2.1	17	88	5	52	50	0	17	32	1.47
46756312--46756347	10	3.7	10	85	7	56	77	11	0	11	0.99
46756393--46756462	27	2.6	27	76	0	77	25	28	32	12	1.93
46756893--46757027	30	4.4	30	78	12	157	62	8	5	23	1.45
46756916--46756962	12	3.8	12	85	5	58	68	6	2	23	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211