genome.fa.s14.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  121  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34340219--34340451	45	5.2	45	94	0	394	25	20	15	38	1.92
34341263--34341316	20	2.7	20	82	0	63	24	20	18	37	1.94
34341263--34341336	30	2.5	30	86	8	98	21	20	18	39	1.93
34341263--34341327	20	3.2	20	71	16	53	23	21	16	38	1.93
34341981--34342307	170	1.9	170	98	0	636	31	15	25	27	1.95
34344161--34344194	16	2.1	17	94	5	61	14	17	26	41	1.88
34345269--34345329	21	3.0	20	85	4	70	13	21	0	65	1.26
34345274--34345335	20	3.2	20	80	13	67	9	20	0	69	1.16
34353351--34353399	22	2.2	23	82	10	66	42	18	8	30	1.79
34363834--34363880	20	2.3	20	81	0	58	29	34	12	23	1.92
34368151--34368197	20	2.3	20	81	0	58	29	34	12	23	1.92
34373664--34373736	30	2.4	30	95	0	128	32	9	16	41	1.81
34374712--34376044	668	2.0	666	89	2	2048	28	18	17	36	1.93
34376976--34377048	30	2.4	30	95	0	128	32	9	16	41	1.81
34378026--34379358	668	2.0	666	88	2	1994	28	18	17	36	1.93
34381097--34381159	21	3.0	21	88	2	90	30	3	33	33	1.74
34382863--34382919	21	2.7	21	76	7	53	10	26	1	61	1.38
34385047--34385100	29	1.9	27	85	7	72	11	5	7	75	1.16
34385412--34385474	21	3.0	21	88	2	90	30	3	33	33	1.74
34389621--34389667	20	2.3	20	85	0	67	21	12	36	29	1.91
34391336--34391441	48	2.2	48	85	9	137	14	24	1	59	1.45
34392534--34392559	12	2.2	12	100	0	52	15	0	7	76	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34400884--34400932	20	2.4	21	80	10	57	22	34	10	32	1.88
34400923--34400970	20	2.4	19	76	10	51	25	27	12	35	1.92
34404524--34404581	12	4.8	12	74	22	50	74	6	10	8	1.23
34406229--34406259	12	2.6	12	94	0	53	12	3	0	83	0.75
34408099--34408140	13	2.9	15	86	13	61	54	23	7	14	1.64
34408099--34408146	16	3.2	16	85	11	66	52	22	10	14	1.72
34408212--34408245	16	2.1	16	88	0	50	47	8	2	41	1.50
34423584--34423635	23	2.3	22	75	21	54	9	23	1	65	1.32
34423593--34423648	12	4.7	12	74	14	53	12	23	0	64	1.27
34428965--34429003	20	2.0	20	90	10	62	23	28	10	38	1.87
34431173--34431360	45	4.2	45	94	0	313	38	14	20	25	1.91
34439467--34439522	13	4.0	14	90	6	87	21	10	0	67	1.20
34439467--34439522	14	4.0	15	90	9	84	21	10	0	67	1.20
34439468--34439522	27	2.0	28	92	3	94	21	10	0	67	1.21
34439562--34439603	11	3.7	11	93	3	66	11	2	9	76	1.12
34439561--34439604	12	3.8	12	84	6	63	11	2	9	77	1.08
34439561--34439609	13	4.0	13	86	7	59	14	4	12	69	1.33
34444254--34444486	45	5.2	45	95	0	394	37	15	20	26	1.92
34447800--34447852	23	2.4	22	76	20	56	9	18	1	69	1.25
34450554--34450615	23	2.7	23	82	9	81	29	6	27	37	1.82
34455021--34455104	45	1.9	42	88	11	125	27	7	3	61	1.38
34455391--34455452	23	2.7	23	84	0	79	27	6	29	37	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34460147--34460204	12	4.8	12	93	4	89	75	3	6	13	1.13
34462436--34462477	17	2.4	18	80	7	52	57	4	23	14	1.56
34464104--34464143	18	2.2	18	86	4	53	12	27	0	60	1.33
34465190--34465251	26	2.4	27	94	5	110	24	11	0	64	1.26
34465190--34465244	13	4.4	12	91	8	92	21	9	0	69	1.16
34465206--34465269	27	2.4	27	81	2	67	25	15	1	57	1.47
34465292--34465334	11	3.7	11	84	6	50	11	2	9	76	1.10
34465290--34465322	13	2.5	13	100	0	66	12	0	6	81	0.85
34468459--34468518	14	4.8	13	78	13	72	73	1	8	16	1.16
34468459--34468513	24	2.3	24	87	6	76	76	1	7	14	1.08
34491391--34491566	38	4.6	38	81	10	198	24	28	23	23	2.00
34491391--34491567	75	2.3	76	84	5	214	24	28	23	23	2.00
34499089--34499272	79	2.3	81	83	8	227	25	27	22	24	2.00
34499070--34499272	39	5.1	40	81	9	229	24	27	22	25	2.00
34507033--34507217	79	2.3	82	83	7	229	24	27	22	24	2.00
34507014--34507217	40	5.1	40	81	8	229	24	27	22	25	2.00
34525482--34525533	10	5.1	10	76	2	50	44	11	25	19	1.84
34526646--34526716	26	2.7	26	86	4	90	25	29	19	25	1.99
34527758--34527787	16	1.9	16	93	6	53	30	0	20	50	1.49
34542204--34542242	20	2.0	20	90	10	62	15	23	5	56	1.59
34542515--34542623	50	2.2	50	83	0	128	22	27	22	28	1.99
34544479--34544551	35	2.1	35	94	0	128	36	6	9	46	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34550117--34550248	50	2.6	51	84	3	176	38	11	15	34	1.83
34550090--34550237	50	2.9	50	80	7	174	41	11	14	32	1.82
34567887--34567919	1	33.0	1	100	0	66	0	0	0	100	0.00
34568003--34568090	38	2.3	38	92	0	140	18	18	7	55	1.66
34571983--34572020	20	1.9	20	94	0	67	60	5	18	15	1.53
34572178--34572234	18	3.2	18	75	12	55	77	5	15	1	1.03
34575339--34575492	27	5.7	26	79	9	143	25	16	28	28	1.97
34575338--34575487	54	2.8	53	79	11	164	26	17	28	28	1.98
34575444--34575513	26	2.7	26	84	6	88	21	14	32	31	1.93
34581588--34581772	40	4.7	40	82	7	191	24	22	27	25	2.00
34581588--34581772	79	2.3	81	81	7	218	24	22	27	25	2.00
34581641--34581805	79	2.1	79	80	6	183	26	20	27	26	1.99
34586851--34586881	13	2.4	13	100	0	62	12	6	0	80	0.89
34586851--34586889	13	3.0	13	88	7	53	20	7	0	71	1.10
34586933--34586965	12	2.8	12	100	0	66	24	0	6	69	1.10
34586930--34586965	11	3.2	11	88	7	54	22	0	8	69	1.15
34589624--34589651	5	5.6	5	100	0	56	82	0	0	17	0.68
34594307--34594351	13	3.5	13	84	6	56	6	24	0	68	1.13
34594363--34594415	18	2.9	18	77	8	54	1	16	5	75	1.08
34606107--34606140	13	2.6	13	90	0	50	44	0	11	44	1.40
34607929--34607983	12	4.8	12	86	11	71	70	3	7	18	1.25
34607937--34607974	10	3.7	10	96	3	67	76	0	7	15	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34607936--34607975	11	3.7	11	93	6	73	77	0	7	15	0.98
34608888--34608928	18	2.4	17	91	4	64	78	0	14	7	0.96
34610742--34610776	13	2.7	13	90	0	52	45	0	11	42	1.40
34612153--34612199	20	2.3	20	85	7	60	25	31	19	23	1.98
34612164--34612201	10	3.8	10	83	13	51	28	28	15	26	1.96
34614673--34614750	7	11.0	7	84	15	99	70	0	15	14	1.17
34614673--34614750	28	2.7	29	94	2	131	70	0	15	14	1.17
34616019--34616463	100	4.4	100	80	3	468	33	21	19	25	1.97
34616054--34616436	50	7.7	49	66	10	184	34	22	18	25	1.96
34616019--34616486	50	9.4	50	66	6	151	32	21	19	26	1.97
34616019--34616463	200	2.2	199	82	4	538	33	21	19	25	1.97
34622397--34622443	18	2.7	18	78	15	55	78	0	12	8	0.95
34622397--34622444	17	2.8	17	74	3	51	79	0	12	8	0.94
34622624--34623813	592	2.0	592	97	0	2236	27	14	17	39	1.89
34625168--34625252	33	2.7	32	83	8	102	27	14	8	50	1.70
34631526--34631559	16	2.1	16	89	10	52	44	2	8	44	1.50
34636422--34636471	19	2.7	19	93	3	84	28	36	14	22	1.92
34637688--34637712	13	1.9	13	100	0	50	28	8	8	56	1.57
34637706--34637752	16	2.8	17	81	12	62	25	6	2	65	1.27
34641751--34641838	21	4.3	21	67	16	51	67	0	23	9	1.19
34641873--34641924	16	3.2	16	73	24	54	55	3	32	7	1.46
34641874--34641956	33	2.5	31	81	12	87	54	7	28	9	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34644731--34644963	45	5.2	45	96	0	412	25	20	15	38	1.92
34647950--34648039	46	2.0	46	93	4	155	25	16	22	35	1.95
34653537--34653679	45	3.2	45	92	0	232	25	20	15	38	1.92
34666196--34666249	20	2.7	20	82	0	63	24	20	18	37	1.94
34666196--34666269	30	2.5	30	86	8	98	21	20	18	39	1.93
34666196--34666260	20	3.2	20	71	16	53	23	21	16	38	1.93
34667869--34667894	11	2.4	11	100	0	52	73	7	0	19	1.07
34668975--34669081	6	17.7	6	70	8	74	72	1	17	7	1.16
34668961--34669079	12	10.0	12	70	17	79	71	1	17	9	1.20
34668979--34669081	18	5.6	18	72	7	91	72	1	17	7	1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211