genome.fa.s14.2.7.7.80.10.50.1000.181.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  181  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53716673--53716795	44	2.8	44	82	3	149	32	17	19	30	1.95
53716410--53716922	218	2.4	217	89	0	774	28	18	24	28	1.98
53716802--53716908	44	2.4	45	83	10	148	21	21	30	26	1.98
53717033--53717494	44	10.7	42	73	9	342	30	22	21	25	1.99
53717036--53717494	85	5.3	83	73	8	319	30	22	21	26	1.99
53717018--53717543	129	4.1	129	90	0	782	30	21	21	25	1.98
53717019--53717544	44	12.2	43	70	14	268	30	21	21	25	1.98
53717981--53718032	18	2.8	18	79	2	59	46	36	3	13	1.62
53722838--53722880	10	4.1	10	82	11	50	58	4	0	37	1.19
53728156--53728277	62	2.0	62	93	0	208	34	22	12	30	1.91
53741455--53741518	4	16.8	4	79	12	55	73	3	0	23	0.97
53741459--53741518	23	2.7	23	81	2	77	73	3	0	23	0.98
53741915--53741953	19	2.0	21	85	10	55	69	5	10	15	1.34
53742123--53742180	22	2.6	22	84	7	73	43	17	3	36	1.66
53742136--53742233	19	4.8	19	85	9	106	38	16	8	36	1.78
53742170--53742232	21	3.1	21	90	9	112	38	14	9	38	1.78
53742559--53742592	17	2.0	17	94	0	59	29	14	11	44	1.81
53744308--53744382	14	5.0	15	76	11	64	65	1	1	32	1.09
53745434--53745470	19	2.0	18	89	5	56	40	0	2	56	1.13
53745407--53745471	18	3.8	17	74	15	62	41	0	1	56	1.08
53745439--53745484	19	2.3	20	81	7	58	39	2	4	54	1.32
53746021--53746148	19	6.5	19	83	9	159	40	8	14	35	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53746022--53746127	40	2.7	40	92	5	173	40	8	14	36	1.76
53746165--53746670	44	11.7	42	73	10	342	27	23	21	28	1.99
53746215--53746591	89	4.3	88	73	13	289	27	24	21	26	1.99
53746148--53746675	217	2.4	217	97	0	993	27	22	21	27	1.99
53746662--53747446	132	5.9	132	94	0	1363	23	24	21	30	1.99
53746754--53747213	44	10.4	43	65	17	176	24	24	20	30	1.99
53752252--53752276	13	1.9	13	100	0	50	32	4	24	40	1.73
53753894--53754055	41	4.0	41	91	1	227	29	20	27	22	1.98
53753945--53754090	41	3.6	41	83	1	114	32	20	26	21	1.98
53755316--53755356	15	2.7	15	88	0	64	24	48	7	19	1.74
53759919--53759946	13	2.2	13	100	0	56	28	0	21	50	1.49
53761564--53761725	41	4.0	41	90	3	220	30	20	26	22	1.98
53761565--53761760	82	2.4	82	82	5	209	31	19	25	22	1.98
53761574--53761760	41	4.6	41	85	1	133	31	19	26	22	1.98
53763186--53763340	76	2.0	76	97	0	292	29	30	14	24	1.95
53765068--53765264	98	2.0	98	95	0	358	37	23	9	29	1.87
53765960--53765994	16	2.2	16	89	0	52	60	2	8	28	1.41
53766617--53766729	19	5.8	19	87	4	172	35	15	10	38	1.81
53766617--53766728	40	2.8	40	94	2	192	35	14	10	39	1.81
53766610--53766729	59	2.1	56	87	6	170	35	15	10	39	1.80
53778109--53778136	12	2.3	12	100	0	56	32	28	0	39	1.57
53778408--53778456	24	1.9	27	88	12	77	53	12	0	34	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53784108--53784302	98	2.0	98	93	0	336	36	24	10	28	1.88
53784979--53785027	25	2.0	25	87	0	71	55	4	8	32	1.48
53785770--53785920	19	7.8	19	91	2	230	37	13	9	39	1.79
53785747--53785919	59	2.9	59	89	5	251	38	13	9	38	1.76
53791315--53791365	12	4.2	12	73	14	50	49	0	0	50	1.00
53791321--53791406	26	3.3	26	78	13	88	52	2	1	44	1.21
53791821--53791933	57	2.0	56	96	1	208	26	15	12	46	1.81
53795446--53795483	20	1.9	20	94	0	67	42	13	2	42	1.57
53796549--53796602	27	2.0	27	100	0	108	51	11	14	22	1.73
53796994--53797126	63	2.1	61	84	2	167	17	21	16	44	1.87
53796994--53797140	42	3.6	42	86	3	176	16	21	17	44	1.86
53796994--53797140	21	7.2	21	82	1	149	16	21	17	44	1.86
53802668--53802755	16	5.5	16	81	0	113	30	25	2	42	1.67
53802668--53802766	48	2.1	48	84	7	130	30	23	2	44	1.64
53802668--53802753	32	2.7	32	96	0	154	30	24	2	43	1.67
53811398--53811429	13	2.5	13	100	0	64	28	18	15	37	1.92
53815035--53815163	69	1.9	69	90	0	204	48	7	13	30	1.71
53815556--53815601	18	2.7	17	80	9	58	56	0	13	30	1.37
53825452--53825515	31	2.1	31	83	13	80	57	1	15	25	1.47
53826412--53826575	24	6.7	26	67	12	89	14	26	20	38	1.91
53826420--53826515	49	2.0	49	85	0	129	14	26	19	39	1.90
53826412--53826523	49	2.3	48	79	3	125	14	27	20	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53826605--53826669	25	2.6	25	80	4	78	27	26	18	27	1.98
53835011--53835105	49	1.9	49	85	4	129	21	23	16	38	1.92
53835028--53835137	49	2.2	49	82	9	127	20	24	18	37	1.94
53841771--53841795	7	3.6	7	100	0	50	84	0	0	16	0.63
53846950--53847534	132	4.4	132	80	1	627	33	14	14	37	1.86
53847001--53847513	263	1.9	265	86	1	726	34	14	13	37	1.86
53850829--53850868	14	2.9	14	84	0	53	42	7	7	42	1.61
53850837--53850903	34	1.9	35	85	8	93	37	8	7	46	1.64
53851061--53851111	26	2.2	24	78	21	56	60	5	0	33	1.21
53856507--53856551	22	2.0	23	91	8	76	53	8	6	31	1.58
53859240--53859276	16	2.2	17	90	4	58	35	0	0	64	0.94
53868236--53868262	13	2.1	13	100	0	54	48	7	0	44	1.31
53875599--53875657	24	2.5	24	88	2	93	42	1	1	54	1.20
53877428--53877489	26	2.2	28	86	8	83	48	24	4	22	1.70
53877996--53878041	24	1.9	24	86	0	65	32	8	39	19	1.82
53880244--53880316	37	2.0	37	94	0	128	49	6	9	34	1.62
53884793--53884833	19	2.0	20	86	9	57	26	9	12	51	1.70
53887803--53887885	26	3.3	26	83	3	107	36	22	25	15	1.94
53887815--53887900	26	3.3	26	83	4	104	34	22	26	16	1.95
53888972--53889025	26	2.1	26	100	0	108	35	22	7	35	1.82
53890819--53890867	24	2.0	24	100	0	98	32	0	30	36	1.58
53892678--53892712	15	2.3	15	90	0	52	71	0	8	20	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53903229--53903267	12	3.2	12	85	0	51	35	10	35	17	1.84
53909129--53909163	18	1.9	18	88	0	52	22	0	60	17	1.37
53909129--53909154	6	4.3	6	100	0	52	15	0	65	19	1.27
53909383--53909655	75	3.7	71	76	11	255	40	11	4	43	1.62
53909383--53909657	73	3.7	73	78	8	288	40	11	4	43	1.61
53921051--53921150	49	2.0	49	84	3	130	28	24	19	29	1.98
53927454--53927498	18	2.5	18	81	0	54	28	37	13	20	1.90
53927661--53927706	18	2.6	17	83	10	56	36	23	8	30	1.85
53927689--53927748	21	2.9	21	82	0	75	36	20	5	38	1.74
53929645--53929671	13	2.1	13	100	0	54	37	0	0	62	0.95
53935863--53936063	106	1.9	106	97	0	384	30	18	19	30	1.96
53936525--53936630	37	2.8	38	77	16	105	50	0	13	35	1.41
53936909--53936965	22	2.6	23	78	18	75	64	3	7	24	1.34
53937678--53937702	13	1.9	13	100	0	50	68	0	8	24	1.16
53939507--53939546	21	1.9	21	84	0	53	57	5	0	37	1.21
53943503--53943555	22	2.4	22	80	0	61	18	28	1	50	1.57
53943460--53943552	11	8.5	11	69	15	50	20	30	1	48	1.57
53943573--53943632	26	2.4	24	83	8	66	26	5	5	63	1.36
53944203--53944238	15	2.3	16	90	4	56	25	0	2	72	0.98
53949785--53949817	3	11.0	3	100	0	66	66	0	0	33	0.92
53953770--53953835	20	3.3	20	70	8	71	19	27	21	31	1.97
53953764--53953876	40	2.9	41	88	6	155	17	26	17	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53953898--53953978	20	4.2	18	78	10	81	8	27	24	39	1.84
53953898--53953978	19	4.2	19	80	10	92	8	27	24	39	1.84
53953902--53953979	39	2.0	40	85	7	106	8	25	24	41	1.84
53959122--53959221	49	2.0	49	86	0	137	28	25	19	28	1.98
53962710--53962736	13	2.1	13	100	0	54	37	0	0	62	0.95
53968929--53969129	106	1.9	106	97	0	384	30	18	19	30	1.96
53969591--53969696	37	2.8	38	77	16	105	50	0	13	35	1.41
53969975--53970031	22	2.6	23	78	18	75	64	3	7	24	1.34
53970744--53970768	13	1.9	13	100	0	50	68	0	8	24	1.16
53972573--53972612	21	1.9	21	84	0	53	57	5	0	37	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211