genome.fa.s14.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  128  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37328691--37328784	22	4.0	22	72	20	75	7	22	3	67	1.31
37328691--37328784	23	4.0	23	70	17	77	7	22	3	67	1.31
37341075--37341222	74	2.0	74	98	0	287	35	20	12	31	1.90
37341733--37341837	52	2.0	53	86	1	149	37	15	18	29	1.91
37347746--37347797	21	2.5	21	78	12	61	11	19	1	67	1.31
37353589--37353660	30	2.3	30	79	15	76	6	23	5	63	1.40
37355439--37355624	40	4.7	40	86	4	232	26	27	21	24	1.99
37363318--37363463	40	3.7	40	84	5	188	26	27	22	23	2.00
37365619--37365660	16	2.6	16	85	7	50	28	4	2	64	1.26
37368588--37368640	28	1.9	27	85	11	72	32	18	1	47	1.60
37388910--37389011	41	2.5	41	88	3	143	28	19	25	26	1.99
37396519--37396620	41	2.5	41	88	3	143	28	19	25	26	1.99
37398648--37398789	63	2.3	59	81	9	160	47	16	11	24	1.80
37401017--37401109	45	2.1	45	89	0	141	33	20	19	26	1.96
37404033--37404114	42	2.0	42	85	4	112	30	24	14	30	1.95
37406891--37406922	16	2.0	16	93	0	55	25	15	0	59	1.36
37407052--37407140	45	2.0	45	90	0	142	33	23	16	25	1.96
37407151--37407335	51	3.6	51	82	6	225	30	26	17	25	1.98
37407145--37407367	101	2.2	101	78	10	249	30	27	16	26	1.97
37409282--37409429	39	3.8	37	78	12	111	44	10	8	35	1.71
37409319--37409429	39	2.9	38	81	6	125	43	10	9	36	1.71
37411080--37411121	19	2.2	19	86	0	57	16	19	2	61	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37422329--37422367	20	2.0	20	90	10	62	56	5	23	15	1.59
37425837--37426046	45	4.7	45	83	0	224	26	14	24	34	1.94
37442313--37442500	50	3.8	50	84	0	232	22	28	23	25	1.99
37451645--37451674	13	2.3	13	94	0	51	30	6	13	50	1.67
37455251--37455428	27	6.6	27	83	3	205	26	15	28	29	1.96
37455252--37455407	82	1.9	81	88	3	233	26	15	28	29	1.96
37455248--37455428	82	2.2	81	83	2	229	27	15	27	29	1.96
37463095--37463272	27	6.6	27	83	3	205	26	15	28	29	1.96
37463096--37463251	82	1.9	81	88	3	233	26	15	28	29	1.96
37463092--37463272	82	2.2	81	83	2	229	27	15	27	29	1.96
37466636--37466680	21	2.1	22	95	4	83	17	11	33	37	1.85
37467929--37468113	40	4.6	39	82	5	194	25	22	27	24	2.00
37467929--37468113	79	2.3	81	82	7	218	25	22	27	24	2.00
37467982--37468136	79	2.0	79	82	7	190	27	21	26	25	1.99
37474892--37474970	37	2.1	37	88	4	115	25	30	18	25	1.98
37475089--37475575	47	10.4	47	95	0	834	29	29	8	32	1.87
37475089--37475569	186	2.6	186	94	0	827	29	29	8	32	1.87
37475089--37475575	233	2.1	234	94	0	850	29	29	8	32	1.87
37481862--37482023	47	3.5	44	74	12	139	48	3	6	40	1.47
37482042--37482083	21	2.0	21	85	0	57	52	2	9	35	1.47
37483538--37483773	115	2.1	115	84	4	307	22	21	20	36	1.96
37483865--37484302	223	2.0	225	90	1	702	29	19	16	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37483861--37484202	44	7.7	44	69	12	146	28	20	16	33	1.95
37484324--37484735	89	4.6	89	84	3	363	23	21	24	30	1.99
37484419--37484735	45	7.1	45	73	11	186	23	21	24	30	1.99
37484324--37484735	178	2.3	177	85	2	531	23	21	24	30	1.99
37489792--37490005	71	3.1	69	84	7	279	35	18	16	28	1.93
37490579--37490619	21	2.0	21	85	0	55	51	2	9	36	1.48
37492987--37493019	9	3.7	9	95	0	57	30	9	24	36	1.86
37499735--37500490	27	28.3	26	82	5	789	42	21	17	18	1.89
37499735--37500490	80	9.4	80	81	5	794	42	21	17	18	1.89
37499736--37500490	107	7.1	105	81	4	823	42	21	17	18	1.90
37502579--37502693	18	6.2	17	71	18	52	12	20	2	65	1.37
37505029--37505107	31	2.6	30	78	7	88	37	17	18	25	1.93
37505029--37505098	30	2.3	30	82	7	88	37	17	20	25	1.94
37507028--37507470	27	16.7	27	81	3	398	40	20	17	20	1.91
37507332--37507377	22	2.1	22	91	0	74	45	13	19	21	1.84
37519187--37519273	42	2.1	42	100	0	174	16	16	9	58	1.62
37528029--37528091	21	3.0	21	86	6	83	31	3	31	33	1.74
37528040--37528072	11	3.1	11	82	8	50	33	0	36	30	1.58
37529167--37529208	10	4.3	10	78	6	50	28	9	23	38	1.86
37532138--37532167	15	2.1	14	93	6	51	6	20	0	73	1.05
37532189--37532231	18	2.3	19	88	4	61	6	11	2	79	1.02
37532198--37532251	21	2.8	19	86	13	67	3	16	1	77	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37534459--37534503	18	2.6	17	92	3	72	17	8	2	71	1.23
37534479--37534533	29	1.9	28	88	3	83	9	5	7	78	1.10
37534480--37534546	29	2.3	29	80	10	73	10	7	5	76	1.16
37534845--37534907	21	3.0	21	86	6	83	31	3	31	33	1.74
37534856--37534888	11	3.1	11	82	8	50	33	0	36	30	1.58
37535986--37536027	10	4.3	10	78	6	50	28	11	23	35	1.91
37538748--37538858	39	2.9	38	77	6	107	45	9	9	36	1.67
37539642--37539773	50	2.6	51	77	8	142	34	17	10	37	1.84
37540390--37540428	18	2.2	18	86	9	53	56	10	12	20	1.65
37541634--37541703	36	1.9	36	82	0	86	22	14	32	30	1.94
37547672--37547719	18	2.7	18	87	3	71	12	18	0	68	1.20
37547672--37547713	17	2.4	17	92	4	66	14	19	0	66	1.25
37548679--37548713	16	2.2	16	90	5	54	20	2	2	74	1.08
37549909--37550030	59	2.0	59	82	9	147	48	14	12	24	1.78
37556203--37556235	12	2.8	12	95	4	59	15	30	0	54	1.41
37560300--37560368	35	2.0	35	85	0	93	28	21	20	28	1.98
37562774--37562809	18	2.0	18	94	0	63	11	16	2	69	1.29
37569055--37569275	27	8.2	27	85	5	286	46	19	14	19	1.84
37573352--37573410	25	2.4	25	88	0	82	25	11	37	25	1.90
37577803--37577836	13	2.5	13	95	4	59	20	11	0	67	1.21
37587576--37587799	118	1.9	120	83	7	296	25	27	21	24	1.99
37587576--37587799	40	5.7	40	86	6	287	25	27	21	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37602372--37602403	16	2.0	17	88	11	50	40	25	6	28	1.79
37608037--37608085	19	2.6	20	81	18	61	36	2	0	61	1.08
37606768--37611258	898	5.0	900	95	0	7865	35	16	12	35	1.86
37621225--37621254	14	2.1	15	93	6	53	23	20	20	36	1.95
37622310--37623258	471	2.0	471	99	0	1889	40	17	12	28	1.87
37631805--37631935	62	2.1	62	81	5	158	23	20	26	29	1.99
37635912--37635968	27	2.1	27	100	0	114	35	12	17	35	1.87
37637862--37637961	27	3.6	27	86	8	112	32	29	12	27	1.92
37637864--37637961	28	3.5	28	91	2	144	32	28	12	26	1.92
37638410--37638439	14	2.1	14	100	0	60	43	0	6	50	1.28
37640465--37640516	25	2.1	24	85	3	68	57	9	9	23	1.60
37641686--37641762	32	2.5	31	82	4	91	20	18	31	29	1.96
37645721--37645800	32	2.5	32	95	2	144	32	31	18	17	1.94
37657825--37657966	63	2.3	59	84	4	167	46	13	13	26	1.80
37661442--37661481	21	1.9	21	85	10	55	17	17	22	42	1.89
37665039--37665112	39	1.9	39	88	2	114	41	10	9	37	1.73
37665020--37665125	38	2.7	39	82	2	124	43	10	9	36	1.71
37669085--37669113	9	3.3	9	95	4	51	10	6	0	82	0.83
37672603--37672787	79	2.3	82	83	7	229	24	27	22	24	2.00
37672584--37672787	40	5.1	40	81	8	229	24	27	22	25	2.00
37679144--37679775	317	2.0	316	87	3	903	28	24	16	30	1.96
37680837--37681103	40	6.7	40	95	0	480	21	28	20	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37684519--37684703	79	2.3	82	81	7	211	23	27	23	24	2.00
37684500--37684703	40	5.1	40	80	8	211	23	27	23	25	2.00
37686898--37686967	28	2.5	28	92	0	122	35	10	25	28	1.88
37693627--37693706	28	2.9	28	86	0	106	32	12	27	27	1.93
37698704--37698765	18	3.5	16	79	14	52	37	17	9	35	1.83
37698715--37698767	18	2.9	18	88	0	70	39	16	9	33	1.81
37698909--37698942	6	5.7	6	92	0	59	47	17	17	17	1.84
37700101--37700139	19	2.1	19	85	9	53	33	5	10	51	1.58
37700163--37700224	14	4.3	15	76	13	60	35	1	0	62	1.05
37700163--37700235	14	5.0	14	73	15	51	35	2	0	61	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211