genome.fa.s14.2.7.7.80.10.50.1000.168.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  168  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49572320--49572379	27	2.3	25	82	5	66	31	10	21	36	1.87
49580124--49580250	48	2.6	48	83	5	157	22	29	22	25	1.99
49580229--49580361	49	2.6	51	79	9	148	20	21	21	36	1.95
49586967--49587059	44	2.1	44	90	6	143	36	26	4	32	1.76
49587041--49587080	16	2.5	17	88	12	66	30	30	5	35	1.79
49590611--49590671	32	1.9	32	89	0	95	36	3	26	34	1.73
49591242--49591282	21	1.9	22	85	5	57	7	17	2	73	1.17
49592016--49592081	3	21.3	3	73	17	55	33	0	1	65	1.02
49592039--49592081	10	4.5	10	80	11	54	30	0	2	67	1.03
49592016--49592071	14	3.9	15	72	13	55	33	0	0	66	0.92
49592017--49592078	18	3.0	20	77	15	65	33	0	1	64	1.03
49596145--49596186	20	2.0	21	86	13	61	14	16	4	64	1.45
49597133--49597165	7	4.7	7	85	14	50	72	0	15	12	1.12
49598471--49599262	44	17.7	44	73	10	552	31	18	23	26	1.97
49598438--49599307	89	9.7	89	88	2	1188	30	18	24	26	1.98
49598438--49599307	181	4.9	179	92	1	1309	30	18	24	26	1.98
49599860--49599901	21	2.0	22	85	4	59	7	14	2	76	1.10
49600622--49600690	3	22.3	3	72	16	52	31	0	1	66	1.00
49600622--49600688	18	3.9	17	82	9	73	31	0	1	67	1.00
49613543--49613591	3	17.3	3	83	12	68	65	0	34	0	0.93
49613534--49613594	14	4.2	15	85	12	74	63	0	36	0	0.94
49613543--49613595	14	3.9	14	90	2	81	66	0	33	0	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49613539--49613589	11	4.2	12	80	14	61	62	0	37	0	0.95
49613546--49613595	11	4.6	11	83	16	61	66	0	34	0	0.92
49613749--49613811	19	3.0	20	86	9	65	31	3	11	53	1.52
49613771--49614014	21	11.4	19	70	23	118	31	0	13	54	1.42
49613772--49614009	93	2.8	85	80	14	231	31	0	13	54	1.43
49613749--49613959	21	10.0	21	73	18	154	32	0	12	54	1.44
49614152--49614232	37	2.2	37	95	2	144	53	2	2	41	1.27
49616292--49616355	28	2.3	28	94	0	110	35	1	7	54	1.39
49619178--49619203	11	2.4	11	100	0	52	65	7	0	26	1.20
49619315--49619366	20	2.6	19	85	11	61	3	26	1	67	1.18
49619884--49620548	215	3.0	215	83	9	804	40	13	19	26	1.89
49623201--49623228	13	2.2	13	100	0	56	53	14	7	25	1.66
49624256--49624420	82	2.0	82	96	0	303	42	15	16	24	1.88
49625051--49625142	20	4.6	20	74	5	87	30	19	34	15	1.93
49625050--49625142	40	2.3	39	85	7	116	30	19	34	16	1.93
49627098--49627140	22	2.0	22	100	0	86	37	18	27	16	1.92
49631114--49631205	46	2.0	46	93	0	157	27	26	18	28	1.98
49632171--49632200	13	2.3	13	94	0	51	70	10	0	20	1.16
49659275--49659344	25	2.8	25	88	0	104	24	22	20	32	1.97
49669140--49669718	294	2.0	293	88	2	867	30	21	15	32	1.94
49673155--49673300	41	3.6	41	91	1	204	19	29	20	30	1.97
49673155--49673328	82	2.1	82	81	2	206	21	27	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49680534--49680679	41	3.6	41	91	1	204	19	29	20	30	1.97
49680534--49680707	82	2.1	82	81	2	206	21	27	20	30	1.98
49684231--49684257	4	6.8	4	100	0	54	77	0	0	22	0.76
49686036--49686064	8	3.6	8	100	0	58	24	0	0	75	0.80
49686799--49686845	22	2.2	21	81	11	51	51	2	2	44	1.25
49689478--49689531	25	2.2	25	89	0	81	9	20	24	46	1.79
49695927--49695983	27	2.1	27	81	9	64	28	26	15	29	1.96
49695997--49696222	61	3.7	62	78	6	246	25	26	13	34	1.93
49698242--49698488	129	1.9	129	86	1	352	34	23	12	29	1.91
49708029--49708149	43	2.8	42	73	14	111	33	28	16	22	1.95
49711851--49711921	21	3.3	21	68	14	63	67	4	5	22	1.29
49711836--49711930	44	2.1	45	96	1	174	67	4	6	22	1.31
49712025--49712091	33	2.1	33	83	8	84	35	4	0	59	1.18
49712066--49712133	29	2.3	30	77	10	77	41	1	1	55	1.18
49712247--49712444	93	2.2	90	82	7	242	35	9	17	37	1.82
49737658--49737688	16	1.9	16	93	0	53	77	9	3	9	1.10
49738155--49738421	135	2.0	135	93	0	453	45	11	17	25	1.82
49756773--49756813	19	2.2	19	86	4	57	63	7	4	24	1.40
49759057--49759128	35	2.1	35	94	0	126	43	9	18	29	1.81
49762872--49762940	34	2.0	34	100	0	138	42	8	8	40	1.67
49763728--49763778	23	2.2	23	92	0	84	27	9	21	41	1.84
49771603--49771638	15	2.4	15	90	0	54	33	19	19	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49771611--49771642	15	2.1	15	100	0	64	34	15	18	31	1.93
49771772--49772680	466	2.0	466	94	0	1584	28	20	10	40	1.85
49780318--49780496	50	3.6	50	78	3	157	22	24	23	29	1.99
49786856--49786880	13	1.9	13	100	0	50	56	8	0	36	1.29
49790479--49790592	54	2.1	53	85	1	156	24	25	12	37	1.90
49797549--49797578	15	1.9	16	93	6	53	56	0	0	43	0.99
49797784--49797825	21	2.0	21	82	13	52	38	7	7	47	1.58
49802559--49802650	45	2.0	45	93	0	157	17	32	18	31	1.94
49802816--49803024	108	1.9	108	98	0	400	27	23	15	33	1.95
49810829--49810871	21	2.0	23	81	9	54	44	11	11	32	1.77
49814033--49814082	19	2.8	18	87	6	66	30	14	8	48	1.72
49814065--49814096	15	2.2	15	94	5	57	37	3	6	53	1.42
49814282--49814334	27	1.9	28	84	3	72	43	3	7	45	1.50
49814282--49814341	27	2.2	28	81	3	68	45	3	6	45	1.46
49817838--49817894	15	3.8	15	75	6	53	68	7	0	24	1.14
49831363--49831508	40	3.6	40	75	5	107	39	22	18	19	1.93
49831634--49831729	41	2.3	40	78	5	102	15	18	25	40	1.90
49831792--49831869	41	1.9	41	83	0	102	23	17	25	33	1.96
49833538--49833568	16	1.9	16	100	0	62	32	25	9	32	1.88
49838848--49838898	21	2.4	21	86	0	66	37	17	41	3	1.68
49838782--49838979	87	2.3	87	88	3	283	38	19	31	10	1.85
49838935--49839004	21	3.3	21	81	0	77	37	17	40	5	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49839319--49839655	43	7.8	43	86	2	385	24	21	28	25	1.99
49839491--49839563	25	3.2	25	60	25	61	27	23	27	21	1.99
49840616--49840650	17	2.1	17	89	10	54	37	8	8	45	1.65
49843516--49843548	14	2.3	15	89	5	50	78	0	21	0	0.75
49856005--49856072	34	2.0	34	97	0	127	33	11	13	41	1.81
49858747--49859293	49	11.4	49	95	1	961	30	28	8	33	1.86
49858708--49859293	190	3.1	190	95	1	1001	29	29	8	32	1.87
49862709--49863181	40	12.1	40	88	2	667	25	27	22	24	2.00
49862709--49863181	120	4.0	120	93	3	739	25	27	22	24	2.00
49865441--49866034	47	12.6	47	94	3	1007	29	29	8	32	1.87
49869497--49869845	39	8.9	40	89	6	504	25	28	21	24	1.99
49869897--49869971	38	2.0	38	86	5	107	24	26	18	30	1.98
49872104--49872705	47	12.6	49	93	2	971	29	29	8	33	1.86
49872104--49872705	190	3.1	190	94	1	1019	29	29	8	33	1.86
49879482--49879507	3	8.7	3	100	0	52	30	34	0	34	1.58
49882064--49882098	16	2.2	16	90	10	54	48	0	17	34	1.47
49890036--49890086	20	2.5	20	81	6	59	19	3	3	72	1.16
49890037--49890085	26	2.0	26	84	8	66	18	2	4	75	1.06
49893737--49893796	31	1.9	32	86	10	88	15	6	0	78	0.95
49893719--49893779	10	5.9	10	73	21	54	16	3	1	78	0.96
49893717--49893800	37	2.2	38	87	6	118	14	7	1	77	1.04
49893737--49893803	16	4.3	15	76	14	64	14	7	0	77	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49895505--49895572	6	10.5	6	82	17	50	13	0	5	80	0.87
49895516--49895572	7	8.3	7	78	18	66	12	0	5	82	0.82
49895505--49895569	19	3.3	20	81	12	73	13	0	6	80	0.90
49911681--49911712	16	1.9	17	93	6	57	56	12	0	31	1.37
49915384--49915515	42	3.1	41	77	5	131	26	12	25	35	1.92
49921893--49921935	20	2.2	20	91	0	68	37	18	18	25	1.94
49923774--49923822	19	2.6	18	78	12	53	63	8	2	26	1.34
49927221--49927267	25	1.9	25	86	4	69	12	10	27	48	1.74
49928760--49928800	15	2.8	15	88	3	57	21	4	0	73	1.02
49932472--49932544	30	2.4	30	86	0	101	17	23	35	23	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211