genome.fa.s14.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  147  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43791481--43791879	126	3.2	126	89	1	602	28	17	16	37	1.91
43791929--43792041	33	3.5	32	79	5	111	46	12	0	40	1.48
43794303--43794364	13	4.8	13	85	0	79	33	8	14	43	1.75
43796657--43796682	2	13.0	2	100	0	52	50	0	0	50	1.00
43799829--43799908	41	2.0	41	82	0	97	41	28	11	18	1.85
43799832--43799986	66	2.3	66	83	4	177	37	28	16	17	1.92
43799884--43799943	25	2.4	25	91	0	93	36	30	18	15	1.91
43799915--43800021	41	2.7	40	81	9	123	34	28	21	15	1.94
43799951--43800048	38	2.5	38	85	5	115	35	28	19	16	1.93
43805550--43805826	41	7.0	41	82	2	239	35	28	19	16	1.94
43805647--43805831	38	4.8	38	83	3	201	33	30	22	13	1.92
43805561--43805839	76	3.6	79	78	6	264	35	28	20	15	1.93
43810623--43810655	15	2.1	17	88	11	52	21	30	6	42	1.77
43811643--43811915	147	1.9	147	92	1	458	36	19	10	32	1.87
43814452--43814507	25	2.2	25	78	15	62	69	8	7	14	1.35
43815468--43815556	38	2.2	40	88	5	128	49	5	3	41	1.43
43816535--43816573	19	1.9	19	85	10	51	41	0	2	56	1.13
43817110--43817136	11	2.5	11	100	0	54	22	0	0	77	0.76
43818200--43818239	20	2.1	19	85	4	53	55	5	2	37	1.35
43823492--43823539	24	2.0	24	84	8	62	22	22	4	50	1.67
43824392--43824435	22	2.0	22	86	0	61	52	0	0	47	1.00
43824528--43824584	15	3.5	15	73	17	60	50	0	0	49	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43826188--43826252	32	2.0	32	85	5	87	33	15	13	36	1.87
43826902--43826940	19	2.1	19	85	9	53	58	2	20	17	1.50
43830486--43830548	30	2.1	30	90	0	99	25	1	14	58	1.45
43830672--43830705	11	3.0	12	87	12	54	67	0	0	32	0.91
43839580--43839695	48	2.4	48	88	2	171	24	17	32	25	1.96
43839766--43839822	27	2.1	27	83	3	71	28	12	22	36	1.90
43848465--43848506	16	2.6	16	85	7	59	50	0	0	50	1.00
43849956--43850011	3	18.7	3	96	0	103	67	0	32	0	0.91
43851279--43851345	5	13.4	5	83	16	70	77	1	20	0	0.85
43851281--43851334	28	1.9	28	96	0	99	81	1	16	0	0.78
43854665--43855179	31	16.7	31	86	2	644	43	16	8	31	1.77
43855016--43855068	17	3.3	17	69	15	58	47	15	3	33	1.63
43867291--43867716	78	5.5	77	84	2	519	17	16	32	33	1.93
43867291--43867716	117	3.6	116	81	3	487	17	16	32	33	1.93
43867292--43867716	39	10.9	38	82	3	436	17	16	32	33	1.93
43872713--43873609	299	3.0	298	87	2	1216	32	16	19	30	1.94
43875586--43875629	23	1.9	23	90	9	72	11	9	38	40	1.73
43875584--43875635	23	2.3	23	80	6	70	13	13	36	36	1.84
43875609--43875896	39	7.4	39	78	1	254	16	18	31	33	1.93
43875609--43875850	117	2.1	117	81	3	281	16	18	31	33	1.93
43877461--43878341	440	2.0	440	94	0	1555	32	14	22	30	1.94
43881389--43881976	298	2.0	298	88	2	876	32	16	18	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43883163--43883402	50	4.8	50	87	4	333	27	21	32	18	1.97
43883167--43883402	100	2.4	100	91	0	382	27	21	32	18	1.97
43883167--43883448	100	2.8	100	88	2	336	28	21	30	19	1.98
43889797--43889845	16	3.1	16	93	0	89	36	4	36	22	1.73
43889824--43889914	45	2.0	44	89	6	139	31	5	28	34	1.80
43890070--43890599	66	8.9	54	68	20	285	49	5	3	42	1.41
43890204--43890238	18	2.0	17	88	5	52	54	0	0	45	0.99
43890444--43890478	18	2.0	17	88	5	52	54	0	0	45	0.99
43890070--43890599	120	4.4	120	98	0	1015	49	5	3	42	1.41
43890540--43890822	91	3.0	93	86	6	342	48	3	2	45	1.34
43890581--43890748	47	3.7	46	70	18	152	47	4	2	45	1.35
43890640--43890802	26	5.6	28	69	22	86	49	4	1	44	1.29
43890615--43890822	91	2.3	91	94	0	353	46	4	2	46	1.37
43890640--43890782	44	3.2	43	70	16	128	48	3	1	46	1.27
43890665--43890803	47	3.0	47	69	17	146	50	4	1	43	1.30
43893869--43893894	13	2.0	13	100	0	52	53	7	0	38	1.30
43895708--43895774	30	2.2	30	97	0	125	56	17	14	10	1.66
43909435--43909477	3	14.3	3	100	0	86	0	32	0	67	0.91
43912370--43912425	17	3.2	17	80	10	69	66	0	0	33	0.92
43912370--43912417	16	2.9	16	90	3	69	66	0	0	33	0.92
43912373--43912439	25	2.6	27	81	6	77	67	1	0	31	1.00
43912370--43912430	9	6.9	9	75	14	56	65	1	0	32	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43914091--43914168	36	2.2	36	86	4	106	43	0	14	42	1.45
43914116--43914159	23	1.9	23	90	0	70	40	0	15	43	1.47
43914102--43914157	13	4.5	13	78	13	64	41	0	14	44	1.45
43917379--43917615	27	8.8	27	76	0	150	23	27	16	32	1.96
43917407--43917615	81	2.6	81	79	3	197	23	26	16	33	1.96
43917407--43917590	54	3.4	54	76	3	190	22	26	16	33	1.96
43917407--43917626	54	4.1	54	74	8	169	24	26	16	32	1.96
43917936--43917975	16	2.5	16	83	0	53	15	35	2	47	1.58
43927761--43927793	13	2.6	13	90	4	50	57	0	3	39	1.14
43930403--43930485	3	27.7	3	92	4	141	0	33	0	66	0.92
43943931--43943999	12	4.9	14	75	18	54	5	14	1	78	1.01
43943923--43943999	10	7.7	9	72	20	55	5	14	1	79	0.97
43943923--43943985	8	7.5	8	73	16	56	3	15	1	79	0.94
43943923--43944001	41	1.9	41	87	5	115	5	13	1	79	0.95
43943926--43943989	24	2.8	24	79	13	71	4	15	1	78	1.00
43944510--43944546	4	9.2	4	87	0	56	0	29	0	70	0.88
43944498--43944546	12	4.2	12	86	5	55	2	30	0	67	1.02
43947542--43947569	14	2.0	14	100	0	56	21	7	42	28	1.79
43947981--43948022	21	2.0	20	86	4	57	38	2	23	35	1.68
43948477--43948552	25	3.1	25	82	1	73	22	23	19	34	1.97
43950770--43950810	21	2.0	21	95	0	73	43	24	17	14	1.86
43950770--43950823	21	2.6	21	87	0	63	46	22	16	14	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43953799--43953879	25	3.3	25	77	5	76	23	22	22	32	1.98
43955761--43955806	3	15.3	3	100	0	92	67	0	0	32	0.91
43959459--43959633	90	1.9	90	85	6	239	38	20	7	33	1.81
43959670--43959724	29	2.0	29	85	7	78	61	0	1	36	1.06
43959738--43959807	19	3.7	19	79	11	81	67	1	4	27	1.18
43960165--43960189	7	3.6	7	100	0	50	28	0	0	72	0.86
43960164--43960196	14	2.3	15	85	15	52	30	0	0	69	0.88
43960204--43960384	93	2.0	90	83	4	229	35	7	20	35	1.82
43960475--43960499	13	1.9	13	100	0	50	64	0	0	36	0.94
43962846--43962913	9	7.4	9	82	9	75	22	10	25	42	1.84
43962846--43962913	18	3.7	18	81	11	84	22	10	25	42	1.84
43963941--43964031	44	2.1	44	87	4	130	27	9	14	48	1.75
43965903--43966096	94	2.1	94	99	0	379	32	12	12	41	1.81
43967102--43967194	39	2.5	37	80	7	98	27	29	22	20	1.98
43968293--43968332	20	2.0	20	85	9	55	2	15	5	77	1.04
43968463--43968530	31	2.3	28	78	9	73	41	2	1	54	1.24
43968509--43968547	21	1.9	20	84	5	51	46	2	0	51	1.14
43973435--43973477	21	2.0	21	82	8	52	23	20	4	51	1.66
43974519--43974611	39	2.5	37	80	7	98	27	29	22	20	1.98
43975699--43975738	20	2.0	20	85	9	55	2	15	5	77	1.04
43975869--43975936	31	2.3	28	78	9	73	41	2	1	54	1.24
43975915--43975953	21	1.9	20	84	5	51	46	2	0	51	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43980828--43980870	21	2.0	21	82	8	52	23	20	4	51	1.66
43981914--43982006	39	2.5	37	80	7	98	27	29	22	20	1.98
43983108--43983147	20	2.0	20	85	9	55	2	15	5	77	1.04
43983278--43983345	31	2.3	28	78	9	73	41	2	1	54	1.24
43983324--43983362	21	1.9	20	84	5	51	46	2	0	51	1.14
43987201--43987229	6	4.8	6	100	0	58	68	0	31	0	0.89
43990139--43990178	18	2.2	18	100	0	80	32	22	15	30	1.94
43991139--43991241	24	4.1	24	75	16	93	63	1	3	31	1.24
43991146--43991242	16	5.8	17	73	19	80	64	1	3	30	1.15
43991148--43991207	7	7.7	7	77	17	57	63	0	3	33	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211