genome.fa.s14.2.7.7.80.10.50.1000.159.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  159  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47009950--47010135	82	2.3	82	80	3	187	30	18	20	30	1.97
47013196--47013237	11	4.1	10	85	14	59	52	0	16	30	1.44
47042120--47042233	43	2.7	43	76	14	119	21	19	29	28	1.98
47047541--47047573	16	2.1	16	100	0	66	12	27	18	42	1.85
47048858--47048919	31	2.0	32	93	3	108	24	12	8	54	1.64
47048859--47048929	32	2.2	32	87	5	99	22	12	11	53	1.70
47049282--47049326	21	2.2	21	84	4	56	46	8	4	40	1.55
47050898--47050952	25	2.3	23	76	14	58	14	0	12	72	1.12
47052072--47052106	14	2.5	14	95	0	61	34	14	5	45	1.68
47052757--47052793	12	3.0	13	76	15	51	43	35	21	0	1.53
47053207--47053462	48	5.3	48	89	2	300	47	10	11	30	1.74
47057293--47057338	4	11.2	4	86	13	67	0	23	0	76	0.79
47057297--47057334	18	2.2	18	95	4	69	0	23	0	76	0.79
47057293--47057347	26	2.1	26	86	3	74	0	29	0	70	0.87
47057293--47057359	30	2.2	30	84	7	82	1	29	0	68	0.98
47059283--47059334	11	3.5	16	73	26	60	28	25	5	40	1.78
47070368--47070403	16	2.2	17	90	5	56	19	0	8	72	1.10
47072340--47072393	3	19.0	3	74	11	51	64	3	1	29	1.21
47073613--47073675	23	2.9	22	85	4	74	63	3	1	31	1.19
47073614--47073675	3	21.3	3	74	12	58	64	3	1	30	1.19
47073620--47073675	11	5.1	11	82	6	69	66	3	0	30	1.09
47075315--47075506	100	1.9	100	88	0	285	24	24	21	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47087950--47087995	3	15.3	3	82	8	58	63	2	2	32	1.19
47087949--47087994	14	3.1	14	90	6	65	60	2	2	34	1.21
47089327--47089359	8	4.2	8	84	7	50	69	0	0	30	0.88
47089362--47089404	9	4.8	9	80	8	52	60	2	0	37	1.10
47089382--47089423	22	1.9	22	95	0	75	59	4	0	35	1.19
47089323--47089593	19	13.9	19	66	17	112	59	2	1	36	1.24
47089533--47089622	30	3.3	30	66	23	88	56	2	3	37	1.28
47089528--47089644	52	2.2	52	98	0	225	58	1	2	37	1.22
47089361--47089644	10	28.3	10	64	14	68	57	3	2	37	1.27
47093349--47093511	84	1.9	85	88	1	247	44	12	11	31	1.78
47093561--47093759	85	2.3	84	77	10	197	41	11	13	33	1.80
47096484--47096628	33	4.3	33	70	14	91	33	15	23	26	1.95
47096484--47096714	101	2.3	101	91	1	365	32	14	24	29	1.94
47100521--47100564	17	2.6	17	92	0	70	31	2	4	61	1.28
47102627--47102665	19	2.0	20	85	5	53	12	5	7	74	1.20
47105426--47105716	41	7.2	41	73	8	204	22	17	29	30	1.97
47105475--47105686	78	2.6	81	77	8	236	20	17	30	30	1.96
47105482--47105703	119	1.9	120	80	6	263	22	18	28	30	1.97
47106357--47106385	15	1.9	15	100	0	58	20	0	34	44	1.52
47112012--47112075	24	2.7	24	80	4	67	31	32	28	7	1.85
47112012--47112075	30	2.1	30	82	5	76	31	32	28	7	1.85
47112206--47112310	33	3.2	33	79	5	115	17	41	11	29	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47112192--47112317	33	3.9	33	78	6	114	17	42	13	26	1.86
47112616--47112938	48	6.7	48	89	3	463	50	9	9	31	1.66
47116861--47116925	27	2.4	27	89	0	94	23	29	27	20	1.98
47122127--47122264	68	2.0	68	100	0	276	26	15	17	40	1.89
47122979--47123014	2	18.0	2	94	0	63	0	47	0	52	1.00
47126091--47126180	44	2.0	44	100	0	180	22	17	21	38	1.93
47128648--47128686	8	4.9	8	90	9	62	35	0	2	61	1.10
47131067--47131115	26	1.9	26	83	4	64	71	4	6	18	1.23
47133833--47133989	55	2.8	56	89	4	230	33	15	23	27	1.95
47133833--47134008	55	3.3	53	86	7	164	31	15	25	27	1.96
47137025--47137116	47	1.9	48	89	6	143	48	0	7	43	1.31
47136995--47137201	80	2.6	82	86	11	281	49	2	6	41	1.43
47137106--47137250	47	3.1	47	89	3	206	52	3	6	37	1.44
47140444--47140526	38	2.2	37	91	4	132	34	21	10	32	1.88
47140673--47140717	5	9.4	5	79	16	51	73	0	2	24	0.95
47140673--47140717	9	4.8	9	94	5	72	73	0	2	24	0.95
47141073--47141127	19	2.8	19	77	2	56	69	1	5	23	1.19
47141118--47141230	29	3.4	32	74	17	88	58	3	1	36	1.26
47141626--47141856	110	2.1	107	88	5	331	36	15	16	32	1.90
47142145--47142195	12	4.5	11	78	11	50	58	5	1	33	1.33
47142341--47142451	40	2.8	41	79	4	138	36	19	19	24	1.95
47142512--47142751	41	5.9	41	86	0	327	22	24	25	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47144970--47145002	17	1.9	17	100	0	66	24	9	18	48	1.76
47145392--47145598	43	4.8	43	90	0	290	21	18	31	27	1.97
47145641--47145683	22	2.0	22	85	0	59	44	20	18	16	1.87
47147433--47147657	44	5.2	44	70	13	173	26	20	22	29	1.99
47158999--47159228	109	2.1	107	88	1	334	33	16	16	33	1.92
47164742--47164825	7	11.6	7	71	22	50	66	1	1	30	1.07
47164741--47164825	8	10.5	8	69	20	61	67	1	1	30	1.06
47164741--47164825	17	5.3	15	75	19	73	67	1	1	30	1.06
47164744--47164784	21	2.0	21	95	0	73	65	0	0	34	0.93
47164741--47164825	9	9.4	9	68	22	54	67	1	1	30	1.06
47164744--47164814	19	3.7	19	83	11	65	64	1	1	32	1.11
47189835--47189868	17	2.1	17	88	5	52	61	11	5	20	1.50
47189997--47190074	31	2.5	31	82	0	93	52	14	3	29	1.59
47199693--47199759	33	2.0	33	94	0	116	41	20	10	26	1.85
47207786--47207839	22	2.4	23	90	3	83	50	1	1	46	1.23
47207786--47207848	22	2.8	22	80	2	63	49	3	1	46	1.27
47210100--47210142	7	6.1	7	97	0	77	41	0	46	11	1.40
47213268--47213322	3	18.3	3	100	0	110	67	0	0	32	0.91
47213648--47213680	6	5.5	6	100	0	66	66	0	0	33	0.92
47218452--47218537	35	2.4	36	86	5	113	38	8	2	51	1.45
47224678--47224744	19	3.2	23	61	30	58	37	8	10	43	1.71
47226484--47226553	27	2.6	27	80	8	79	25	2	21	50	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47227933--47227974	14	3.0	14	82	0	57	42	16	9	30	1.80
47227898--47227964	34	1.9	35	87	3	100	44	13	10	31	1.77
47241702--47241726	13	1.9	13	100	0	50	48	0	4	48	1.20
47242619--47242666	24	2.1	23	92	7	80	22	29	12	35	1.91
47246314--47246364	25	2.0	26	85	11	70	0	33	1	64	1.05
47247100--47247132	15	2.3	15	89	5	50	48	0	9	42	1.35
47251581--47251702	61	2.0	61	100	0	244	16	31	18	34	1.93
47251689--47251757	28	2.5	28	80	4	77	26	13	4	56	1.55
47251710--47251902	28	6.9	28	80	8	205	22	15	7	54	1.65
47251686--47251920	83	2.8	82	78	5	249	23	16	6	53	1.67
47252400--47252627	43	5.1	42	66	17	102	27	23	14	34	1.94
47252369--47252659	138	2.1	138	87	1	413	26	25	14	33	1.95
47252611--47252715	45	2.3	45	78	3	113	22	20	20	36	1.95
47253638--47253801	87	1.9	86	86	3	231	26	13	20	39	1.89
47254905--47254952	18	2.5	20	86	6	64	37	0	4	58	1.18
47255102--47255137	15	2.4	15	100	0	72	44	5	13	36	1.68
47255899--47255977	25	3.2	25	78	3	72	26	27	16	29	1.97
47255936--47256001	23	2.7	25	86	4	82	33	25	19	21	1.97
47258814--47258906	36	2.6	38	81	10	106	33	20	15	31	1.93
47264402--47264438	17	2.2	17	95	4	67	59	0	40	0	0.97
47265537--47265622	21	4.0	23	73	13	74	15	23	25	36	1.94
47269448--47269473	13	2.0	13	100	0	52	23	15	23	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47274325--47274394	33	2.2	32	85	10	90	55	5	7	31	1.50
47286899--47286933	18	1.9	18	88	11	54	5	5	34	54	1.48
47288176--47288230	27	2.0	27	82	6	67	12	18	32	36	1.88
47293627--47293826	109	1.8	109	98	0	391	30	18	20	31	1.96
47302205--47302253	23	2.1	23	82	14	57	46	16	16	20	1.83
47305747--47305796	25	2.0	25	88	0	73	36	18	16	30	1.92
47305872--47305921	25	2.0	25	88	0	73	38	20	16	26	1.92
47305997--47306046	25	2.0	25	84	0	64	36	20	18	26	1.95
47306122--47306171	25	2.0	25	88	0	73	36	18	18	28	1.94
47306372--47306421	25	2.0	25	84	0	64	36	20	18	26	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211