genome.fa.s14.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  13  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3648424--3648501	10	7.6	10	76	17	63	73	0	25	1	0.91
3648422--3648501	6	13.3	6	71	16	51	73	0	25	1	0.90
3648421--3648503	33	2.6	31	88	7	121	73	0	25	1	0.90
3648421--3648503	22	3.9	22	78	13	93	73	0	25	1	0.90
3648574--3648625	24	2.2	24	96	0	95	82	13	3	0	0.80
3649453--3649506	17	3.2	17	89	5	83	35	12	7	44	1.71
3649598--3649642	19	2.3	20	81	11	58	42	4	8	44	1.56
3649660--3649694	18	2.1	18	89	10	56	20	14	11	54	1.70
3649827--3649883	19	2.9	20	84	5	80	45	14	1	38	1.55
3649898--3649989	17	5.3	17	78	13	98	31	16	11	40	1.85
3649843--3650097	36	7.1	34	71	12	131	34	12	11	41	1.80
3649875--3649989	53	2.2	53	84	3	142	32	14	12	40	1.83
3649875--3650070	35	5.6	35	71	16	129	30	13	13	42	1.83
3649897--3650035	52	2.7	52	77	7	140	31	14	12	41	1.84
3650005--3650074	18	3.9	18	77	1	70	24	12	15	47	1.81
3649897--3650098	17	11.4	17	67	17	56	33	13	12	41	1.82
3650075--3650133	30	1.9	30	82	6	73	45	8	10	35	1.68
3660379--3660414	18	2.0	18	100	0	72	61	11	11	16	1.57
3661621--3661877	84	3.0	85	89	2	383	30	13	8	47	1.73
3663107--3663165	15	3.9	15	78	8	66	37	10	1	50	1.46
3677366--3677395	14	2.1	14	93	0	51	23	0	0	76	0.78
3677986--3678040	28	2.0	28	85	7	76	20	12	12	54	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3681635--3681689	3	18.3	3	100	0	110	65	0	0	34	0.93
3682545--3682585	8	5.0	8	85	5	55	82	2	0	14	0.76
3683585--3683884	132	2.3	129	87	2	413	26	23	17	33	1.96
3696221--3696264	3	14.7	3	100	0	88	65	0	0	34	0.93
3696357--3696401	23	2.0	23	82	8	56	73	15	4	6	1.21
3699323--3699364	23	1.9	22	85	9	59	35	11	7	45	1.69
3699417--3699451	12	2.9	12	82	0	52	40	11	2	45	1.55
3699526--3699565	20	1.9	22	85	10	57	22	7	2	67	1.28
3706567--3706598	14	2.1	16	88	11	50	18	18	43	18	1.88
3722758--3722802	21	2.1	21	83	0	54	46	2	22	28	1.63
3722904--3723070	82	2.0	83	97	2	318	26	26	13	33	1.93
3724399--3724454	28	2.2	24	81	12	58	35	1	3	58	1.26
3725469--3725511	8	5.1	8	86	10	59	41	0	0	58	0.98
3725462--3725503	18	2.3	18	95	0	75	35	2	0	61	1.09
3727926--3727973	19	2.6	18	76	6	51	41	2	0	56	1.11
3730641--3730666	13	2.0	13	100	0	52	23	23	23	30	1.99
3731723--3731748	13	2.0	13	100	0	52	23	23	23	30	1.99
3732805--3732830	13	2.0	13	100	0	52	23	23	23	30	1.99
3733887--3733912	13	2.0	13	100	0	52	23	23	23	30	1.99
3734969--3734994	13	2.0	13	100	0	52	23	23	23	30	1.99
3740003--3740042	19	2.2	18	86	4	53	70	2	20	7	1.24
3740147--3740181	16	2.2	16	100	0	70	45	20	0	34	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3749429--3749557	60	2.2	60	88	0	186	23	18	34	24	1.96
3751077--3751339	46	5.8	46	95	1	444	28	22	16	32	1.96
3751077--3751375	92	3.4	91	89	7	435	28	22	15	33	1.95
3751303--3751401	36	2.8	36	93	0	162	30	21	11	37	1.88
3762381--3762436	21	2.7	21	80	0	58	28	32	26	12	1.93
3766808--3767051	17	13.3	17	70	17	98	45	11	13	30	1.78
3766782--3766908	52	2.5	51	77	11	134	40	10	11	37	1.76
3766858--3767051	18	10.3	19	76	13	170	47	11	11	28	1.75
3766858--3766957	37	2.8	36	78	4	121	50	11	10	29	1.70
3766872--3767021	81	1.9	80	88	4	230	48	10	11	30	1.71
3767082--3767137	17	3.3	17	68	9	51	42	10	10	35	1.74
3767224--3767272	17	2.8	17	82	11	64	44	10	16	28	1.80
3767753--3768086	76	4.4	75	92	4	555	38	18	14	29	1.90
3767753--3768086	151	2.2	151	95	1	589	38	18	14	29	1.90
3768937--3769031	1	95.0	1	76	0	91	2	2	7	88	0.67
3768937--3769031	26	3.7	24	82	10	109	2	2	7	88	0.67
3768937--3769031	9	10.4	9	85	10	122	2	2	7	88	0.67
3773003--3773040	4	9.8	4	94	5	69	50	0	23	26	1.50
3773489--3773527	5	7.8	5	97	0	69	82	0	2	15	0.79
3774806--3774887	17	4.8	16	74	12	56	52	8	12	26	1.67
3774904--3775029	50	2.5	50	80	13	141	42	9	10	37	1.72
3774978--3775077	37	2.8	36	80	3	121	51	11	10	28	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3774992--3775141	81	1.9	79	86	6	212	49	10	10	29	1.71
3774984--3775182	98	2.0	97	86	4	276	49	11	10	28	1.71
3775086--3775171	36	2.4	36	92	0	136	45	12	11	30	1.78
3774901--3775171	17	14.9	18	70	19	145	45	11	10	32	1.74
3775342--3775390	17	2.8	17	82	11	64	44	10	16	28	1.80
3775943--3776005	11	5.2	11	72	20	54	7	30	34	26	1.85
3775951--3775996	14	3.5	14	74	17	53	6	32	34	26	1.82
3775943--3776005	25	2.5	25	97	0	117	7	30	34	26	1.85
3776001--3776068	22	3.0	24	82	10	88	1	25	5	67	1.21
3776001--3776068	24	2.9	23	85	10	84	1	25	5	67	1.21
3776204--3776263	3	19.3	3	76	19	52	0	30	0	70	0.88
3776198--3776263	13	5.5	12	74	18	66	0	28	0	71	0.87
3776885--3776953	30	2.3	30	85	9	88	40	7	23	28	1.81
3785998--3786064	33	2.0	33	100	0	134	52	17	8	20	1.72
3793570--3793619	26	2.0	25	84	4	64	66	8	0	26	1.19
3794284--3794366	21	3.7	21	80	12	85	59	8	6	26	1.50
3801153--3801202	17	2.7	20	78	18	70	10	0	44	46	1.37
3805782--3805831	17	2.7	20	78	18	70	10	0	44	46	1.37
3821078--3821121	20	2.1	21	84	12	56	61	15	6	15	1.54
3821682--3821740	29	2.0	30	86	3	84	33	3	11	50	1.56
3822593--3822626	14	2.4	14	90	5	50	55	0	5	38	1.24
3824733--3824776	18	2.4	18	85	11	54	72	4	0	22	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3826139--3826207	21	3.3	20	76	17	63	37	42	2	17	1.64
3826884--3826947	34	1.9	34	93	3	112	50	12	4	32	1.61
3826957--3827057	41	2.5	41	85	6	134	36	21	18	22	1.95
3827096--3827190	39	2.4	39	83	1	118	21	20	20	38	1.93
3827843--3827923	42	2.0	39	85	7	108	46	2	0	50	1.14
3839957--3840084	63	2.0	63	92	0	211	28	17	18	35	1.94
3841253--3841295	18	2.5	18	92	7	72	60	0	4	34	1.17
3843582--3843691	40	2.8	39	80	6	123	32	21	25	20	1.97
3843639--3843717	39	2.0	40	82	2	97	34	22	25	17	1.96
3844027--3844059	15	2.3	15	94	5	59	33	0	33	33	1.58
3844162--3844213	7	7.4	7	80	0	59	19	0	46	34	1.50
3844166--3844221	21	2.7	21	77	5	60	21	0	46	32	1.52
3844162--3844221	14	4.3	14	80	4	59	21	0	45	33	1.52
3844337--3844370	14	2.4	14	90	0	50	23	0	29	47	1.52
3844249--3844500	129	1.9	128	79	7	276	33	1	19	45	1.59
3851224--3851278	28	2.0	28	100	0	110	25	21	14	38	1.92
3852061--3852108	17	2.8	17	93	6	80	58	2	4	35	1.29
3858721--3858765	23	2.0	22	86	4	63	35	6	2	55	1.38
3862172--3862206	18	1.9	18	88	11	54	37	0	0	62	0.95
3862718--3862742	2	12.5	2	100	0	50	48	0	52	0	1.00
3864723--3864753	13	2.3	14	94	5	55	61	0	0	38	0.96
3865061--3865088	3	9.3	3	100	0	56	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3865068--3865117	26	1.9	26	83	0	64	60	10	2	28	1.40
3866335--3866404	35	2.0	35	100	0	140	31	5	11	51	1.61
3868390--3868423	16	2.1	16	88	0	50	50	14	17	17	1.79
3871218--3871258	21	2.0	21	90	0	64	29	21	29	19	1.98
3879242--3879286	23	2.0	22	86	4	63	35	6	2	55	1.38
3880702--3880728	12	2.2	12	100	0	54	25	18	22	33	1.97
3881839--3881947	48	2.3	48	95	0	191	40	16	11	31	1.85
3882641--3882674	3	11.3	3	87	0	50	61	0	2	35	1.11
3882638--3882674	12	3.1	12	88	0	56	59	0	5	35	1.20
3882629--3882693	21	3.1	21	82	4	69	56	1	6	35	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211